Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Forward (+)

11192217 .. 11218945

Gene Structure 26729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG073800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTCTGCTGAAGGAGAACGGAGTGATGAGACCCCCTTTGATGATCTAATGGAACTAGTACAACAAATAGTTGCCTTTCACATGAGGCACAATGCCGAACCGGAAGTTGTTGACCTTTTAATGGAGGTGGAAGACCTTGATCTGTTAGTTGAGCATGTTGATAAGACAAATTTTAAGAGGACTTGTCTCTACCTCACCAGTTCGGCAAGATACCTTCCTGGACCAGATGATATGTTAGTTTTGGATATTGCATTCATGATATATCTGAAATTTGAAGAGTATCCAAATGCACTTCAGATTGCTCTTTTCCTCGACAATAAGGAGGCACACTTACTTGATGGCCGGGCAAGTGCTGGTGCTAGTGTTGATTCAGCCAGACAGAACTTAGCTGCTACGTTTGTTAATGCATTTGTCAATGCTGGCTTTGGTCAGGATAAGTTGATGACTGTCCCATCAGATGCCTCAAGTGGTGGTGCATCAGGAAACTGGCTTTTCAAGAATAAGGAGCATGGGAAGACCAGTGCTGCAGCAAGTCTGGGTACAATTTTACTGTGGGATGTTGACTCCGGGCTGGCTCAAATTGACAAGTACTTCCACAGCAATGACAACCATGTCATTGCTGGTGCGTTGTTAGGGGTTGGGATTATACGTAGTAAGCTGACTCCTATACTAAATGACGCCAAAGCTCCCCTTGATGTTATCACATTCGCTGCAATCTCCTTGGGGTTGATATATGTTGGTTCTTGCAATGAGGAGGTGGCTCAGGCAATCATATTTGCACTAATGGACAGAAGTGACGCTGAGTTGGGGGAGCCCCTTGCTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

275

Amino Acids

29.89

Weight (kDa)

4.54

Isoelectric Point (pI)

29.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN1_RPN2_N	PF17781	10 - 108	3.7e-35	RPN1 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	611
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	2 cut(s)	169, 269
AcuI	CTGAAG	2 cut(s)	30, 278
AcyI	GRCGYC	1 cut(s)	678
AfaI	GTAC	3 cut(s)	60, 541, 590
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	2 cut(s)	275, 496
AhlI	ACTAGT	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	3 cut(s)	389, 658, 686
AluI	AGCT	3 cut(s)	389, 658, 686
Alw26I	GTCTC	2 cut(s)	23, 191
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	4 cut(s)	389, 524, 527, 710
ApoI	RAATTY	2 cut(s)	169, 269
AspS9I	GGNCC	1 cut(s)	221
AsuC2I	CCSGG	2 cut(s)	344, 568
AsuHPI	GGTGA	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	816
BbsI	GAAGAC	2 cut(s)	138, 521
BbvI	GCAGC	4 cut(s)	376, 511, 539, 697
BccI	CCATC	2 cut(s)	332, 460
BciT130I	CCWGG	1 cut(s)	219
BciVI	GTATCC	1 cut(s)	291
BcnI	CCSGG	2 cut(s)	344, 568
BcoDI	GTCTC	2 cut(s)	23, 191
BcuI	ACTAGT	1 cut(s)	55
BfaI	CTAG	2 cut(s)	56, 360
BfmI	CTRYAG	1 cut(s)	525
BfuI	GTATCC	1 cut(s)	291
BisI	GCNGC	4 cut(s)	390, 525, 528, 711
BlsI	GCNGC	4 cut(s)	391, 526, 529, 712
BmcAI	AGTACT	1 cut(s)	590
Bme1390I	CCNGG	3 cut(s)	219, 344, 568
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	813
BmrFI	CCNGG	3 cut(s)	219, 344, 568
BmsI	GCATC	2 cut(s)	448, 485
BpiI	GAAGAC	2 cut(s)	138, 521
Bpu10I	CCTNAGC	1 cut(s)	762
BpuEI	CTTGAG	1 cut(s)	448
BpuMI	CCSGG	2 cut(s)	344, 568
BsaAI	YACGTR	1 cut(s)	650
BsaHI	GRCGYC	1 cut(s)	678
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	720
BsaWI	WCCGGW	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse1I	ACTGG	3 cut(s)	198, 491, 519
Bse3DI	GCAATG	3 cut(s)	607, 615, 754
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	720
BseGI	GGATG	1 cut(s)	562
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMI	GCAATG	3 cut(s)	607, 615, 754
BseMII	CTCAG	2 cut(s)	776, 792
BseNI	ACTGG	3 cut(s)	198, 491, 519
BseRI	GAGGAG	1 cut(s)	767
BseXI	GCAGC	4 cut(s)	376, 511, 539, 697
BshFI	GGCC	1 cut(s)	342
BsiSI	CCGG	3 cut(s)	101, 343, 567
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	2 cut(s)	23, 191
BsmFI	GGGAC	1 cut(s)	434
BsmI	GAATGC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	342
Bso31I	GGTCTC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	816
Bsp143I	GATC	2 cut(s)	43, 139
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	2 cut(s)	775, 793
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	813
BspMAI	CTGCAG	1 cut(s)	529
BspTNI	GGTCTC	1 cut(s)	23
BsrDI	GCAATG	3 cut(s)	607, 615, 754
BsrI	ACTGG	3 cut(s)	198, 491, 519
BssECI	CCNNGG	1 cut(s)	720
BssMI	GATC	2 cut(s)	43, 139
BssNI	GRCGYC	1 cut(s)	678
BssT1I	CCWWGG	1 cut(s)	720
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	2 cut(s)	448, 552
Bst6I	CTCTTC	1 cut(s)	270
BstACI	GRCGYC	1 cut(s)	678
BstBAI	YACGTR	1 cut(s)	650
BstC8I	GCNNGC	3 cut(s)	421, 573, 823
BstDEI	CTNAG	3 cut(s)	385, 762, 801
BstF5I	GGATG	1 cut(s)	562
BstKTI	GATC	2 cut(s)	46, 142
BstMAI	GTCTC	2 cut(s)	23, 191
BstMBI	GATC	2 cut(s)	43, 139
BstNI	CCWGG	1 cut(s)	219
BstNSI	RCATGY	1 cut(s)	158
BstSCI	CCNGG	3 cut(s)	217, 342, 566
BstSFI	CTRYAG	1 cut(s)	525
BstSNI	TACGTA	1 cut(s)	650
BstV1I	GCAGC	4 cut(s)	376, 511, 539, 697
BstV2I	GAAGAC	2 cut(s)	138, 521
BsuI	GTATCC	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	562
BtsIMutI	CAGTG	1 cut(s)	526
Cac8I	GCNNGC	3 cut(s)	421, 573, 823
CciI	TCATGA	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	221
CseI	GACGC	2 cut(s)	686, 806
Csp6I	GTAC	3 cut(s)	59, 540, 589
CviAII	CATG	5 cut(s)	82, 155, 256, 509, 611
CviQI	GTAC	3 cut(s)	59, 540, 589
DdeI	CTNAG	3 cut(s)	385, 762, 801
DpnI	GATC	2 cut(s)	45, 141
DpnII	GATC	2 cut(s)	43, 139
DrdI	GACNNNNNNGTC	1 cut(s)	611
DseDI	GACNNNNNNGTC	1 cut(s)	611
EaeI	YGGCCR	1 cut(s)	340
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco105I	TACGTA	1 cut(s)	650
Eco130I	CCWWGG	1 cut(s)	720
Eco24I	GRGCYC	1 cut(s)	816
Eco31I	GGTCTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	221
Eco57I	CTGAAG	2 cut(s)	30, 278
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	720
EcoT22I	ATGCAT	1 cut(s)	409
EcoT38I	GRGCYC	1 cut(s)	816
ErhI	CCWWGG	1 cut(s)	720
FaeI	CATG	5 cut(s)	85, 158, 259, 512, 614
FalI	AAGNNNNNCTT	2 cut(s)	675, 707
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	5 cut(s)	81, 154, 255, 508, 610
Fnu4HI	GCNGC	4 cut(s)	390, 525, 528, 711
FokI	GGATG	1 cut(s)	569
FriOI	GRGCYC	1 cut(s)	816
Fsp4HI	GCNGC	4 cut(s)	390, 525, 528, 711
FspBI	CTAG	2 cut(s)	56, 360
GluI	GCNGC	4 cut(s)	390, 525, 528, 711
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	3 cut(s)	101, 343, 567
HgaI	GACGC	2 cut(s)	686, 806
Hin1I	GRCGYC	1 cut(s)	678
Hin1II	CATG	5 cut(s)	85, 158, 259, 512, 614
HincII	GTYRAC	2 cut(s)	112, 562
HindII	GTYRAC	2 cut(s)	112, 562
HinfI	GANTC	3 cut(s)	368, 563, 661
HpaII	CCGG	3 cut(s)	101, 343, 567
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	2 cut(s)	112, 562
Hpy188I	TCNGA	3 cut(s)	267, 297, 457
Hpy188III	TCNNGA	4 cut(s)	256, 431, 480, 496
Hpy8I	GTNNAC	2 cut(s)	112, 562
HpyAV	CCTTC	2 cut(s)	5, 224
HpyCH4III	ACNGT	2 cut(s)	448, 552
HpyCH4IV	ACGT	2 cut(s)	395, 649
HpyCH4V	TGCA	8 cut(s)	251, 290, 407, 476, 527, 713, 747, 779
HpyF3I	CTNAG	3 cut(s)	385, 762, 801
HpySE526I	ACGT	2 cut(s)	395, 649
Hsp92I	GRCGYC	1 cut(s)	678
Hsp92II	CATG	5 cut(s)	85, 158, 259, 512, 614
Kzo9I	GATC	2 cut(s)	43, 139
LmnI	GCTCC	3 cut(s)	505, 691, 811
Lsp1109I	GCAGC	4 cut(s)	376, 511, 539, 697
LweI	GCATC	2 cut(s)	448, 485
MaeI	CTAG	2 cut(s)	56, 360
MaeII	ACGT	2 cut(s)	395, 649
MaeIII	GTNAC	1 cut(s)	794
MalI	GATC	2 cut(s)	45, 141
MboI	GATC	2 cut(s)	43, 139
MboII	GAAGA	3 cut(s)	143, 287, 526
MhlI	GDGCHC	1 cut(s)	816
MluCI	AATT	4 cut(s)	169, 269, 543, 579
MlyI	GAGTC	2 cut(s)	557, 655
MnlI	CCTC	9 cut(s)	78, 118, 171, 203, 316, 320, 472, 745, 748
Mph1103I	ATGCAT	1 cut(s)	409
MseI	TTAA	3 cut(s)	119, 174, 402
MslI	CAYNNNNRTG	1 cut(s)	600
MspI	CCGG	3 cut(s)	101, 343, 567
MspR9I	CCNGG	3 cut(s)	219, 344, 568
Mva1269I	GAATGC	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	219
NciI	CCSGG	2 cut(s)	344, 568
NdeII	GATC	2 cut(s)	43, 139
NlaIII	CATG	5 cut(s)	85, 158, 259, 512, 614
NlaIV	GGNNCC	1 cut(s)	813
NmuCI	GTSAC	1 cut(s)	794
NsiI	ATGCAT	1 cut(s)	409
NspI	RCATGY	1 cut(s)	158
PagI	TCATGA	1 cut(s)	255
PctI	GAATGC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	368
PfoI	TCCNGGA	1 cut(s)	217
PkrI	GCNGC	4 cut(s)	391, 526, 529, 712
PleI	GAGTC	2 cut(s)	557, 655
PpsI	GAGTC	2 cut(s)	557, 655
Ppu21I	YACGTR	1 cut(s)	650
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	813
PspPI	GGNCC	1 cut(s)	221
PstI	CTGCAG	1 cut(s)	529
RsaI	GTAC	3 cut(s)	60, 541, 590
RsaNI	GTAC	3 cut(s)	59, 540, 589
RseI	CAYNNNNRTG	1 cut(s)	600
SaqAI	TTAA	3 cut(s)	119, 174, 402
SatI	GCNGC	4 cut(s)	390, 525, 528, 711
Sau3AI	GATC	2 cut(s)	43, 139
Sau96I	GGNCC	1 cut(s)	221
ScaI	AGTACT	1 cut(s)	590
SchI	GAGTC	2 cut(s)	557, 655
ScrFI	CCNGG	3 cut(s)	219, 344, 568
SduI	GDGCHC	1 cut(s)	816
SfaNI	GCATC	2 cut(s)	448, 485
SfcI	CTRYAG	1 cut(s)	525
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	1 cut(s)	463
SmoI	CTYRAG	1 cut(s)	463
SnaBI	TACGTA	1 cut(s)	650
SpeI	ACTAGT	1 cut(s)	55
Sse9I	AATT	4 cut(s)	169, 269, 543, 579
SspMI	CTAG	2 cut(s)	56, 360
StyD4I	CCNGG	3 cut(s)	217, 342, 566
StyI	CCWWGG	1 cut(s)	720
TaaI	ACNGT	2 cut(s)	448, 552
TaiI	ACGT	2 cut(s)	398, 652
TaqI	TCGA	1 cut(s)	312
TasI	AATT	4 cut(s)	169, 269, 543, 579
TatI	WGTACW	2 cut(s)	58, 588
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	3 cut(s)	119, 174, 402
Tru9I	TTAA	3 cut(s)	119, 174, 402
TscAI	CASTG	1 cut(s)	526
TseFI	GTSAC	1 cut(s)	794
TseI	GCWGC	4 cut(s)	389, 524, 527, 710
Tsp45I	GTSAC	1 cut(s)	794
TspDTI	ATGAA	1 cut(s)	244
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	526
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	2 cut(s)	169, 269
XceI	RCATGY	1 cut(s)	158
XcmI	CCANNNNNNNNNTGG	1 cut(s)	617
XspI	CTAG	2 cut(s)	56, 360
ZrmI	AGTACT	1 cut(s)	590
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.