Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000018.1

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Forward (+)

314611 .. 321697

Gene Structure 7087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000018.1_g000063.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2688 bp

atggcatcgcaagatccgaacacgaacgccgcaagcggcagcggcaagcaggacgagcccaccaagccgccgcccccaaaggattccaaaaagaaagatgacaagaaggacgaggatttgtccgatgaagatttggccttgaagcaacaattggagttatatgtggagagggttcaagatcccgatcccgggttgcagaaggttgcccttgagagtatgaggcaggaaattcgtacctcaactagttccatgacctcagttccaaagccgttaaaatatcttcgcccacattatggaactctaaaagcatattatgaaacaatgagtgattcggatttgaggaaatacctcgcagatatattgtcggttttggcattgaccatgtctgctgaaggagaacgggaaagcttaaagtttagattattgggttcagatggtgatattggttcatggggccatgaatatgtcaggaacttagctggagaaattgctcaagaatatgccaagcgacagttacagagtgatgagaccccctttgatgatctaatggaactagtacaacaaatagttgcttttcacatgaggcacaatgccgaaccggaagctgttgaccttttaatggaggtggaagaccttgatctgttagttgagcatgttgataagacaaattttaagaggacttgtctctacctcaccagttcggcaagataccttcctggaccagatgatatgttagttttggatattgcattcatgatatatctgaaatttgaagagtatccaaatgcactgcagattgctcttttcctcgacaataaggagtatgtaaagcaagtctttacctcttgtgatgatctgctgcgtaaaaagcaattctgttacatccttgccagacatggtagtaattttgagcttaatgatgagatggttgcagaagatgaagaaagagaagcattgcaggatattatcaataatgctaaactcagtgaaggttatcttacccttgctcgtgatattgaggtcatggaggccaaaactcctgaagatatatacaaggcacacttacttgatggccgggcaagtgctggtgctagtgttgattcagccagacagaacttagctgctacatttgttaatgcatttgtcaatgctggctttggtcaggataagttgatgactgtcccatcagatgcctcgagtggtggtgcatcaggaaactggcttttcaagaataaggagcatgggaagaccagtgctgcagcaagtctgggtacaattttactgtgggatgttgactccgggctggctcaaattgacaagtacttccacagcaatgacaaccatgttattgctggtgcgttgttaggggttgggattgtcaattgcagtataaaaaatgattgtgatccagcactggcacttctgggcgaatacatagataaagaagatccatctatccgaattggtgcaataatgggtctagggattgcatatgctggtgctgagaatgagcagatacgtagtaagctgactcctatactaaatgacgccaaagctccccttgatgttatcacattcgctgcaatctccttggggttgatatatgttggttcttgcaatgaggaggtggctcaggcaattatatttgcactaatggaccgaagtgacgctgagttgggggagccccttgctcgcctaataccactcagcctaggtcttctgtaccttgggaagcaggaaagtgttgaggccacagctgaagtttcaaagacatttcatgaaaaaatcagaaaacattgtgatatgactctgctttcttgtgcttatgcgggaacaggaaatgttctcaaggttcaaaaccttcttggccattgttcacaacatcttgagaagggtgaaacacaccagggccctgctgtgcttggtattgcgatgatagcaatggctgaagagttgggacttgagatggcaattcgttcattggagcatcttctacagtatggagaacaaaatatccgtcgggcagttcctttggctcttggtctcctttgcatatcaaatccaaaggtcaccgttatggacacattaagcagacttagccatgatacggattcagaagtagcaatggcagcagtaatttccttaggtgtgataggggcaggaaccaacaatgccagaatagctgccatgcttcgcaatctctcaagttattactacaaggatgccagcctactcttctgtgtgcgaattgctcaaggtcttgttcatttaggaaagggtttattgactctaaatccatatcattctgatcgcttcttgttatcaccggcagcacttggtggaatcataaccatgctgcatgcatgtcttgatatgaaagccatcattttggggaagtatcattatgttctctactttctgatattggcaatgcagccgagaatgttgctaactgtagacgagaatctaaagccgttgtctgtccctgttcgggtcggccaagctgtggatgttgttggccaggctggtcgtcccaaaacaattactggctttcagacccactcaacaccagttcttttggctgccggcgatagagctgagctagcgactgagaagtatattcccctttccccaatccttgaagggtttgtgattttgaaagaaaatccagagtatcgggaagagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

895

Amino Acids

98.33

Weight (kDa)

5.08

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	293, 2506
AccI	GTMKAC	1 cut(s)	2457
AciI	CCGC	6 cut(s)	30, 36, 42, 68, 71, 1829
AclWI	GGATC	5 cut(s)	8, 173, 179, 1400, 1442
AcoI	YGGCCR	4 cut(s)	1072, 1867, 2497, 2518
AcsI	RAATTY	3 cut(s)	228, 667, 767
AcuI	CTGAAG	4 cut(s)	411, 1062, 1779, 1968
AcyI	GRCGYC	1 cut(s)	1548
AdeI	CACNNNGTG	1 cut(s)	2339
AfaI	GTAC	5 cut(s)	235, 558, 1273, 1322, 1724
AfiI	CCNNNNNNNGG	7 cut(s)	188, 189, 293, 619, 2107, 2491, 2506
AgsI	TTSAA	8 cut(s)	142, 176, 773, 1228, 1767, 1856, 2642, 2659
AhlI	ACTAGT	2 cut(s)	242, 553
AjnI	CCWGG	3 cut(s)	715, 1905, 2520
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AloI	GAACNNNNNNTCC	2 cut(s)	1998, 2030
Alw26I	GTCTC	3 cut(s)	521, 689, 2048
AlwI	GGATC	5 cut(s)	8, 173, 179, 1400, 1442
Ama87I	CYCGRG	2 cut(s)	188, 1195
AoxI	GGCC	9 cut(s)	135, 454, 1029, 1072, 1749, 1867, 1909, 2497, 2518
ApaI	GGGCCC	1 cut(s)	1913
ApoI	RAATTY	3 cut(s)	228, 667, 767
ArsI	GACNNNNNNTTYG	2 cut(s)	2002, 2034
AspA2I	CCTAGG	1 cut(s)	1711
AspS9I	GGNCC	5 cut(s)	454, 719, 1657, 1909, 1910
AsuC2I	CCSGG	4 cut(s)	189, 190, 1076, 1300
AsuHPI	GGTGA	5 cut(s)	449, 685, 1907, 2062, 2316
AsuNHI	GCTAGC	1 cut(s)	2602
AvaI	CYCGRG	2 cut(s)	188, 1195
AvaII	GGWCC	2 cut(s)	719, 1657
AvrII	CCTAGG	1 cut(s)	1711
AxyI	CCTNAGG	1 cut(s)	2143
BaeGI	GKGCMC	1 cut(s)	1913
BalI	TGGCCA	2 cut(s)	1869, 2520
BanII	GRGCYC	3 cut(s)	60, 1686, 1913
BauI	CACGAG	1 cut(s)	1008
BbsI	GAAGAC	3 cut(s)	636, 1253, 1709
BccI	CCATC	7 cut(s)	428, 919, 1064, 1192, 1459, 1960, 2390
BceAI	ACGGC	2 cut(s)	253, 2458
BcgI	CGANNNNNNTGC	4 cut(s)	212, 246, 2428, 2462
BciT130I	CCWGG	3 cut(s)	717, 1907, 2522
BciVI	GTATCC	1 cut(s)	789
BcnI	CCSGG	4 cut(s)	189, 190, 1076, 1300
BcoDI	GTCTC	3 cut(s)	521, 689, 2048
BcuI	ACTAGT	2 cut(s)	242, 553
BfaI	CTAG	6 cut(s)	243, 554, 1092, 1481, 1712, 2603
BfmI	CTRYAG	4 cut(s)	791, 1257, 1994, 2454
BfuI	GTATCC	1 cut(s)	789
BlnI	CCTAGG	1 cut(s)	1711
BlpI	GCTNAGC	1 cut(s)	2598
BmcAI	AGTACT	1 cut(s)	1322
Bme1390I	CCNGG	7 cut(s)	189, 190, 717, 1076, 1300, 1907, 2522
Bme18I	GGWCC	2 cut(s)	719, 1657
BmeT110I	CYCGRG	2 cut(s)	188, 1195
BmgT120I	GGNCC	5 cut(s)	454, 719, 1657, 1909, 1910
BmiI	GGNNCC	4 cut(s)	455, 1683, 1911, 2164
BmrFI	CCNGG	7 cut(s)	189, 190, 717, 1076, 1300, 1907, 2522
BmsI	GCATC	5 cut(s)	14, 1180, 1217, 1996, 2212
BmtI	GCTAGC	1 cut(s)	2606
BpiI	GAAGAC	3 cut(s)	636, 1253, 1709
BpmI	CTGGAG	1 cut(s)	501
Bpu10I	CCTNAGC	1 cut(s)	1632
Bpu1102I	GCTNAGC	1 cut(s)	2598
BpuEI	CTTGAG	7 cut(s)	230, 477, 1832, 1907, 1982, 2188, 2238
BpuMI	CCSGG	4 cut(s)	189, 190, 1076, 1300
BsaAI	YACGTR	1 cut(s)	1520
BsaBI	GATNNNNATC	2 cut(s)	183, 1404
BsaHI	GRCGYC	1 cut(s)	1548
BsaI	GGTCTC	2 cut(s)	521, 2048
BsaJI	CCNNGG	5 cut(s)	188, 1590, 1711, 1726, 1906
BsaWI	WCCGGW	1 cut(s)	598
Bsc4I	CCNNNNNNNGG	7 cut(s)	188, 189, 293, 619, 2107, 2491, 2506
Bse118I	RCCGGY	2 cut(s)	2326, 2585
Bse1I	ACTGG	6 cut(s)	696, 1223, 1251, 1419, 2551, 2570
Bse21I	CCTNAGG	1 cut(s)	2143
Bse3DI	GCAATG	6 cut(s)	953, 1339, 1624, 1947, 2130, 2436
Bse8I	GATNNNNATC	2 cut(s)	183, 1404
BseBI	CCWGG	3 cut(s)	717, 1907, 2522
BseDI	CCNNGG	5 cut(s)	188, 1590, 1711, 1726, 1906
BseGI	GGATG	4 cut(s)	882, 1294, 2227, 2515
BseJI	GATNNNNATC	2 cut(s)	183, 1404
BseLI	CCNNNNNNNGG	7 cut(s)	188, 189, 293, 619, 2107, 2491, 2506
BseMI	GCAATG	6 cut(s)	953, 1339, 1624, 1947, 2130, 2436
BseMII	CTCAG	8 cut(s)	270, 997, 1494, 1646, 1662, 1720, 2589, 2601
BseNI	ACTGG	6 cut(s)	696, 1223, 1251, 1419, 2551, 2570
BseRI	GAGGAG	1 cut(s)	1637
BseSI	GKGCMC	1 cut(s)	1913
BshFI	GGCC	9 cut(s)	137, 456, 1031, 1074, 1751, 1869, 1911, 2499, 2520
BsiHKCI	CYCGRG	2 cut(s)	188, 1195
BsiSI	CCGG	6 cut(s)	189, 599, 1075, 1299, 2327, 2586
BslFI	GGGAC	4 cut(s)	1166, 1971, 2468, 2517
BslI	CCNNNNNNNGG	7 cut(s)	188, 189, 293, 619, 2107, 2491, 2506
BsmAI	GTCTC	3 cut(s)	521, 689, 2048
BsmFI	GGGAC	4 cut(s)	1166, 1971, 2468, 2517
BsmI	GAATGC	1 cut(s)	749
BsnI	GGCC	9 cut(s)	137, 456, 1031, 1074, 1751, 1869, 1911, 2499, 2520
Bso31I	GGTCTC	2 cut(s)	521, 2048
BsoBI	CYCGRG	2 cut(s)	188, 1195
Bsp120I	GGGCCC	1 cut(s)	1909
Bsp1286I	GDGCHC	3 cut(s)	60, 1686, 1913
Bsp143I	GATC	9 cut(s)	13, 178, 184, 541, 637, 853, 1405, 1447, 2308
Bsp1720I	GCTNAGC	1 cut(s)	2598
BspACI	CCGC	6 cut(s)	30, 36, 42, 68, 71, 1829
BspANI	GGCC	9 cut(s)	137, 456, 1031, 1074, 1751, 1869, 1911, 2499, 2520
BspCNI	CTCAG	8 cut(s)	269, 996, 1495, 1645, 1663, 1719, 2590, 2602
BspHI	TCATGA	2 cut(s)	753, 1777
BspLI	GGNNCC	4 cut(s)	455, 1683, 1911, 2164
BspMAI	CTGCAG	2 cut(s)	795, 1261
BspOI	GCTAGC	1 cut(s)	2606
BspPI	GGATC	5 cut(s)	8, 173, 179, 1400, 1442
BspTNI	GGTCTC	2 cut(s)	521, 2048
BsrDI	GCAATG	6 cut(s)	953, 1339, 1624, 1947, 2130, 2436
BsrFI	RCCGGY	2 cut(s)	2326, 2585
BsrI	ACTGG	6 cut(s)	696, 1223, 1251, 1419, 2551, 2570
BssAI	RCCGGY	2 cut(s)	2326, 2585
BssECI	CCNNGG	5 cut(s)	188, 1590, 1711, 1726, 1906
BssMI	GATC	9 cut(s)	13, 178, 184, 541, 637, 853, 1405, 1447, 2308
BssNI	GRCGYC	1 cut(s)	1548
BssSI	CACGAG	1 cut(s)	1008
BssT1I	CCWWGG	3 cut(s)	1590, 1711, 1726
Bst2BI	CACGAG	1 cut(s)	1008
Bst2UI	CCWGG	3 cut(s)	717, 1907, 2522
Bst4CI	ACNGT	6 cut(s)	513, 1180, 1284, 1998, 2074, 2455
Bst6I	CTCTTC	4 cut(s)	768, 1944, 2240, 2676
BstACI	GRCGYC	1 cut(s)	1548
BstBAI	YACGTR	1 cut(s)	1520
BstC8I	GCNNGC	9 cut(s)	34, 47, 1153, 1305, 1693, 2227, 2361, 2587, 2604
BstEII	GGTNACC	1 cut(s)	2068
BstF5I	GGATG	4 cut(s)	882, 1294, 2227, 2515
BstKTI	GATC	9 cut(s)	16, 181, 187, 544, 640, 856, 1408, 1450, 2311
BstMAI	GTCTC	3 cut(s)	521, 689, 2048
BstMBI	GATC	9 cut(s)	13, 178, 184, 541, 637, 853, 1405, 1447, 2308
BstMWI	GCNNNNNNNGC	9 cut(s)	42, 55, 64, 868, 1937, 2097, 2129, 2180, 2603
BstNI	CCWGG	3 cut(s)	717, 1907, 2522
BstNSI	RCATGY	3 cut(s)	656, 2363, 2367
BstPI	GGTNACC	1 cut(s)	2068
BstSCI	CCNGG	7 cut(s)	187, 188, 715, 1074, 1298, 1905, 2520
BstSFI	CTRYAG	4 cut(s)	791, 1257, 1994, 2454
BstSLI	GKGCMC	1 cut(s)	1913
BstSNI	TACGTA	1 cut(s)	1520
BstV2I	GAAGAC	3 cut(s)	636, 1253, 1709
BstX2I	RGATCY	3 cut(s)	13, 178, 1447
BstXI	CCANNNNNNTGG	1 cut(s)	2389
BstYI	RGATCY	3 cut(s)	13, 178, 1447
Bsu36I	CCTNAGG	1 cut(s)	2143
BsuI	GTATCC	1 cut(s)	789
BsuRI	GGCC	9 cut(s)	137, 456, 1031, 1074, 1751, 1869, 1911, 2499, 2520
BtgZI	GCGATG	1 cut(s)	1946
BtsCI	GGATG	4 cut(s)	882, 1294, 2227, 2515
BtsI	GCAGTG	1 cut(s)	788
BtsIMutI	CAGTG	4 cut(s)	788, 991, 1258, 1412
Cac8I	GCNNGC	9 cut(s)	34, 47, 1153, 1305, 1693, 2227, 2361, 2587, 2604
CciI	TCATGA	2 cut(s)	753, 1777
Cfr10I	RCCGGY	2 cut(s)	2326, 2585
Cfr13I	GGNCC	5 cut(s)	454, 719, 1657, 1909, 1910
Cfr9I	CCCGGG	1 cut(s)	188
CseI	GACGC	2 cut(s)	1556, 1676
Csp6I	GTAC	5 cut(s)	234, 557, 1272, 1321, 1723
CviQI	GTAC	5 cut(s)	234, 557, 1272, 1321, 1723
DpnI	GATC	9 cut(s)	15, 180, 186, 543, 639, 855, 1407, 1449, 2310
DpnII	GATC	9 cut(s)	13, 178, 184, 541, 637, 853, 1405, 1447, 2308
DraIII	CACNNNGTG	1 cut(s)	2339
EaeI	YGGCCR	4 cut(s)	1072, 1867, 2497, 2518
Eam1104I	CTCTTC	4 cut(s)	768, 1944, 2240, 2676
EarI	CTCTTC	4 cut(s)	768, 1944, 2240, 2676
Eco105I	TACGTA	1 cut(s)	1520
Eco130I	CCWWGG	3 cut(s)	1590, 1711, 1726
Eco24I	GRGCYC	3 cut(s)	60, 1686, 1913
Eco31I	GGTCTC	2 cut(s)	521, 2048
Eco47I	GGWCC	2 cut(s)	719, 1657
Eco57I	CTGAAG	4 cut(s)	411, 1062, 1779, 1968
Eco81I	CCTNAGG	1 cut(s)	2143
Eco88I	CYCGRG	2 cut(s)	188, 1195
Eco91I	GGTNACC	1 cut(s)	2068
EcoO109I	RGGNCCY	2 cut(s)	1909, 1910
EcoO65I	GGTNACC	1 cut(s)	2068
EcoRII	CCWGG	3 cut(s)	715, 1905, 2520
EcoT14I	CCWWGG	3 cut(s)	1590, 1711, 1726
EcoT22I	ATGCAT	2 cut(s)	1141, 2365
EcoT38I	GRGCYC	3 cut(s)	60, 1686, 1913
ErhI	CCWWGG	3 cut(s)	1590, 1711, 1726
FalI	AAGNNNNNCTT	8 cut(s)	821, 853, 981, 1013, 1046, 1078, 1545, 1577
FaqI	GGGAC	4 cut(s)	1166, 1971, 2468, 2517
FauI	CCCGC	1 cut(s)	1822
FauNDI	CATATG	1 cut(s)	1492
FblI	GTMKAC	1 cut(s)	2457
FokI	GGATG	4 cut(s)	869, 1301, 2234, 2522
FriOI	GRGCYC	3 cut(s)	60, 1686, 1913
FspBI	CTAG	6 cut(s)	243, 554, 1092, 1481, 1712, 2603
GsuI	CTGGAG	1 cut(s)	501
HaeIII	GGCC	9 cut(s)	137, 456, 1031, 1074, 1751, 1869, 1911, 2499, 2520
HapII	CCGG	6 cut(s)	189, 599, 1075, 1299, 2327, 2586
HgaI	GACGC	2 cut(s)	1556, 1676
Hin1I	GRCGYC	1 cut(s)	1548
HincII	GTYRAC	2 cut(s)	610, 1294
HindII	GTYRAC	2 cut(s)	610, 1294
HindIII	AAGCTT	1 cut(s)	406
HpaII	CCGG	6 cut(s)	189, 599, 1075, 1299, 2327, 2586
HphI	GGTGA	5 cut(s)	449, 685, 1907, 2062, 2316
Hpy166II	GTNNAC	4 cut(s)	610, 1294, 1877, 2458
Hpy8I	GTNNAC	4 cut(s)	610, 1294, 1877, 2458
Hpy99I	CGWCG	1 cut(s)	2022
HpyAV	CCTTC	8 cut(s)	100, 193, 386, 722, 983, 1871, 1885, 2636
HpyCH4III	ACNGT	6 cut(s)	513, 1180, 1284, 1998, 2074, 2455
HpyCH4IV	ACGT	1 cut(s)	1519
HpyF10VI	GCNNNNNNNGC	9 cut(s)	42, 55, 64, 868, 1937, 2097, 2129, 2180, 2603
HpySE526I	ACGT	1 cut(s)	1519
Hsp92I	GRCGYC	1 cut(s)	1548
KroI	GCCGGC	1 cut(s)	2585
KroNI	GCCGGC	1 cut(s)	2587
Kzo9I	GATC	9 cut(s)	13, 178, 184, 541, 637, 853, 1405, 1447, 2308
LmnI	GCTCC	4 cut(s)	1237, 1561, 1681, 1984
LweI	GCATC	5 cut(s)	14, 1180, 1217, 1996, 2212
MaeI	CTAG	6 cut(s)	243, 554, 1092, 1481, 1712, 2603
MaeII	ACGT	1 cut(s)	1519
MaeIII	GTNAC	4 cut(s)	513, 878, 1664, 2068
MalI	GATC	9 cut(s)	15, 180, 186, 543, 639, 855, 1407, 1449, 2310
MboI	GATC	9 cut(s)	13, 178, 184, 541, 637, 853, 1405, 1447, 2308
MfeI	CAATTG	2 cut(s)	149, 1381
MflI	RGATCY	3 cut(s)	13, 178, 1447
MhlI	GDGCHC	3 cut(s)	60, 1686, 1913
MlsI	TGGCCA	2 cut(s)	1869, 2520
MluNI	TGGCCA	2 cut(s)	1869, 2520
MlyI	GAGTC	4 cut(s)	1289, 1525, 1801, 2281
Mox20I	TGGCCA	2 cut(s)	1869, 2520
Mph1103I	ATGCAT	2 cut(s)	1141, 2365
MroNI	GCCGGC	1 cut(s)	2585
MscI	TGGCCA	2 cut(s)	1869, 2520
MseI	TTAA	7 cut(s)	272, 410, 617, 672, 915, 1134, 2087
MslI	CAYNNNNRTG	4 cut(s)	462, 1332, 2075, 2351
Msp20I	TGGCCA	2 cut(s)	1869, 2520
MspA1I	CMGCKG	2 cut(s)	42, 1757
MspI	CCGG	6 cut(s)	189, 599, 1075, 1299, 2327, 2586
MspR9I	CCNGG	7 cut(s)	189, 190, 717, 1076, 1300, 1907, 2522
MunI	CAATTG	2 cut(s)	149, 1381
Mva1269I	GAATGC	1 cut(s)	749
MvaI	CCWGG	3 cut(s)	717, 1907, 2522
MwoI	GCNNNNNNNGC	9 cut(s)	42, 55, 64, 868, 1937, 2097, 2129, 2180, 2603
NaeI	GCCGGC	1 cut(s)	2587
NciI	CCSGG	4 cut(s)	189, 190, 1076, 1300
NdeI	CATATG	1 cut(s)	1492
NdeII	GATC	9 cut(s)	13, 178, 184, 541, 637, 853, 1405, 1447, 2308
NgoMIV	GCCGGC	1 cut(s)	2585
NheI	GCTAGC	1 cut(s)	2602
NlaIV	GGNNCC	4 cut(s)	455, 1683, 1911, 2164
NmeAIII	GCCGAG	1 cut(s)	2463
NmuCI	GTSAC	2 cut(s)	1664, 2068
NsiI	ATGCAT	2 cut(s)	1141, 2365
NspI	RCATGY	3 cut(s)	656, 2363, 2367
PaeI	GCATGC	1 cut(s)	2363
PaeR7I	CTCGAG	1 cut(s)	1195
PagI	TCATGA	2 cut(s)	753, 1777
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PctI	GAATGC	1 cut(s)	749
PdiI	GCCGGC	1 cut(s)	2587
PfeI	GAWTC	6 cut(s)	83, 329, 1100, 2111, 2343, 2464
PflFI	GACNNNGTC	1 cut(s)	382
PflMI	CCANNNNNTGG	2 cut(s)	293, 2506
PfoI	TCCNGGA	1 cut(s)	715
PleI	GAGTC	4 cut(s)	1289, 1525, 1801, 2281
PpsI	GAGTC	4 cut(s)	1289, 1525, 1801, 2281
Ppu21I	YACGTR	1 cut(s)	1520
Psp6I	CCWGG	3 cut(s)	715, 1905, 2520
PspEI	GGTNACC	1 cut(s)	2068
PspGI	CCWGG	3 cut(s)	715, 1905, 2520
PspN4I	GGNNCC	4 cut(s)	455, 1683, 1911, 2164
PspOMI	GGGCCC	1 cut(s)	1909
PspPI	GGNCC	5 cut(s)	454, 719, 1657, 1909, 1910
PspXI	VCTCGAGB	1 cut(s)	1195
PstI	CTGCAG	2 cut(s)	795, 1261
PsuI	RGATCY	3 cut(s)	13, 178, 1447
PsyI	GACNNNGTC	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	1757
RsaI	GTAC	5 cut(s)	235, 558, 1273, 1322, 1724
RsaNI	GTAC	5 cut(s)	234, 557, 1272, 1321, 1723
RseI	CAYNNNNRTG	4 cut(s)	462, 1332, 2075, 2351
SaqAI	TTAA	7 cut(s)	272, 410, 617, 672, 915, 1134, 2087
Sau3AI	GATC	9 cut(s)	13, 178, 184, 541, 637, 853, 1405, 1447, 2308
Sau96I	GGNCC	5 cut(s)	454, 719, 1657, 1909, 1910
ScaI	AGTACT	1 cut(s)	1322
SchI	GAGTC	4 cut(s)	1289, 1525, 1801, 2281
ScrFI	CCNGG	7 cut(s)	189, 190, 717, 1076, 1300, 1907, 2522
SduI	GDGCHC	3 cut(s)	60, 1686, 1913
SfaNI	GCATC	5 cut(s)	14, 1180, 1217, 1996, 2212
SfcI	CTRYAG	4 cut(s)	791, 1257, 1994, 2454
Sfr274I	CTCGAG	1 cut(s)	1195
SinI	GGWCC	2 cut(s)	719, 1657
SlaI	CTCGAG	1 cut(s)	1195
SmaI	CCCGGG	1 cut(s)	190
SmiMI	CAYNNNNRTG	4 cut(s)	462, 1332, 2075, 2351
SmlI	CTYRAG	8 cut(s)	209, 492, 1195, 1847, 1886, 1961, 2203, 2253
SmoI	CTYRAG	8 cut(s)	209, 492, 1195, 1847, 1886, 1961, 2203, 2253
SnaBI	TACGTA	1 cut(s)	1520
SpeI	ACTAGT	2 cut(s)	242, 553
SphI	GCATGC	1 cut(s)	2363
SsiI	CCGC	6 cut(s)	30, 36, 42, 68, 71, 1829
SspMI	CTAG	6 cut(s)	243, 554, 1092, 1481, 1712, 2603
StyD4I	CCNGG	7 cut(s)	187, 188, 715, 1074, 1298, 1905, 2520
StyI	CCWWGG	3 cut(s)	1590, 1711, 1726
TaaI	ACNGT	6 cut(s)	513, 1180, 1284, 1998, 2074, 2455
TaiI	ACGT	1 cut(s)	1522
TaqI	TCGA	2 cut(s)	810, 1196
TaqII	GACCGA	1 cut(s)	1674
TatI	WGTACW	2 cut(s)	556, 1320
TauI	GCSGC	5 cut(s)	32, 39, 45, 70, 73
TfiI	GAWTC	6 cut(s)	83, 329, 1100, 2111, 2343, 2464
Tru1I	TTAA	7 cut(s)	272, 410, 617, 672, 915, 1134, 2087
Tru9I	TTAA	7 cut(s)	272, 410, 617, 672, 915, 1134, 2087
TscAI	CASTG	4 cut(s)	795, 991, 1258, 1419
TseFI	GTSAC	2 cut(s)	1664, 2068
Tsp45I	GTSAC	2 cut(s)	1664, 2068
TspGWI	ACGGA	2 cut(s)	2006, 2123
TspMI	CCCGGG	1 cut(s)	188
TspRI	CASTG	4 cut(s)	795, 991, 1258, 1419
Tth111I	GACNNNGTC	1 cut(s)	382
Van91I	CCANNNNNTGG	2 cut(s)	293, 2506
VpaK11BI	GGWCC	2 cut(s)	719, 1657
XapI	RAATTY	3 cut(s)	228, 667, 767
XceI	RCATGY	3 cut(s)	656, 2363, 2367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1349
XhoI	CTCGAG	1 cut(s)	1195
XmaI	CCCGGG	1 cut(s)	188
XmaJI	CCTAGG	1 cut(s)	1711
XmiI	GTMKAC	1 cut(s)	2457
XspI	CTAG	6 cut(s)	243, 554, 1092, 1481, 1712, 2603
ZrmI	AGTACT	1 cut(s)	1322
Zsp2I	ATGCAT	2 cut(s)	1141, 2365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.