Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Forward (+)

39735779 .. 39743298

Gene Structure 7520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG314300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2682 bp

ATGGCATCGCAAGATCCGAACACGAACGCCGCAAGCGGCAGCGGCAAGCAGGACGAGCCCACCAAACCGCCGCCCCCAAAGGATTCCAAAAAGAAAGATGACAAGAAGGACGAGGATTTGTCCGATGAAGATTTGGCCTTGAAGCAACAATTGGAGTTATATGTGGAGAGGGTTCAAGATCCCGATCCCGGGTTGCAGAAGGTCGCCCTTGAGAGTATGAGGCAGGAAATTCGTACCTCAACTAGTTCCATGACCTCAGTTCCAAAGCCGTTAAAATATCTTCGCCCACATTATGGAACTCTAAAAGCATATTATGAAACAATGAGTGATTCGGATTTGAGGAAATACCTCGCAGATATATTGTCGGTTTTGGCATTGACCATGTCTGCTGAAGGAGAATGGGAAAGCTTAAAGTTTAGATTATTGGGTTCAGATGGTGATATTGGTTCATGGGGCCATGAATATGTCAGGAACTTAGCTGGAGAAATTGCTCAAGAATATGCCAAGCGACAGAGTGATGAGACCCCCTTTGATGATCTAATGGAACTAGTACAACAAATAGTTGCTTTTCACATGAGGCACAATGCCGAACCGGAAGCTGTTGACCTTTTAATGGAGGTGGAAGACCTTGATCTGTTAGTTGAGCATGTTGATAAGACAAATTTTAAGAGGACTTGTCTCTACCTCACCAGTTCGGCAAGATACCTTCCTGGACCAGATGATATGTTAGTTTTGGATATTGCATTCATGATATATCTGAAATTTGAAGAGTATCCAAATGCACTGCAGATTGCTCTTTTCCTTGACAATAAGGAGTATGTAAAACAAGTCTTTACCTCTTGTGATGATCTGCTGCGTAAAAAGCAATTCTGTTACATCCTTGCCAGACATGGTAGTAATTTTGAGCTTAATGATGAGATGGTTGCAGAAGATGAAGAAAGAGAAGCATTGCAGGATATTATCAATAATGCTAAACTCAGTGAAGGTTATCTTACCCTTGCTCGTGATATTGAGGTCATGGAGGCCAAAACTCCTGAAGATATATACAAGGCACACTTACTTGATGGCCGGGCAAGTGCTGGTGCTAGTGTTGATTCAGCCAGACAGAACTTAGCTGCTACATTTGTTAATGCATTTGTCAATGCTGGCTTTGGTCAGGATAAGTTGATGACTGTCCCATCAGATGCCTCGAGTGGTGGTGCATCAGGAAACTGGCTTTTCAAGAATAAGGAGCATGGGAAGACCAGTGCCGCAGCAAGTCTGGGTACAATTTTACTGTGGGATGTTGACTCCGGGCTGCCTCAAATTGACAAGTACTTCCACAGCAATGACAACCATGTTATTGCTGGTGCGTTGTTAGGGGTTGGGATTGTCAATTGCAGTATAAAAAATGATTGTGATCCAGCACTGGCACTTCTGGGCGAATACATAGATAAAGAAGATCCATCTATCCGAATTGGTGCAATAATGGGTCTAGGGATTGCATATGCTGGTGCTGAGAACGAGCAGATACGTAGTAAGCTGACTCCTATACTAAATGACGCCAAAGCTCCCCTTGATGTTATCACATTCGCTGCAATCTCCTTGGGGTTGATATATGTTGGTTCTTGCAATGAGGAGGTGGCTCAGGCAATTATATTTGCACTAATGGACCGAAGTGACGCTGAGTTGGGGGAGCCCCTTGCTCGCCTAATACCACTCAGCCTAGGTCTTCTGTACCTTGGGAAGCAGGAAAGTGTTGAGGCCACAGCTGAAGTTTCAAAGACATTTCATGAAAAAATCAGAAAACATTGTGATATGACTCTGCTTTCTTGTGCTTATGCGGGAACAGGAAATGTTCTCAAGGTTCAAAACCTTCTTGGCCATTGTTCACAACATCTTGAGAAGGGTGAAACACACCAGGGCCCTGCTGTGCTTGGTATTGCGATGATAGCAATGGCTGAAGAGTTGGGACTTGAGATGGCAATTCGTTCATTGGAGCATCTTCTACAGTATGGAGAACAAAATATCCGTCGGGCAGTTCCTTTGGCTCTTGGTCTCCTTTGCATATCAAATCCAAAGGTCACCGTTATGGACACATTAAGCAGACTTAGCCATGATACGGATTCAGAAGTAGCAATGGCAGCAGTAATTTCCTTAGGTGTGATAGGGGCAGGAACCAACAATGCCAGAATAGCTGCCATGCTTCGTAATCTCTCAAGTTATTACTACAAGGATGCCAGCCTACTCTTCTGTGTGCGAATTGCTCAAGGTCTTGTTCATTTAGGAAAGGGTTTATTGACTCTAAATCCATTTCATTCTGATCGCTTCTTGTTATCACCGGCAGCACTTGGTGGAATCATAACCATGCTGCATGCATGTCTTGATATGAAAGCCATCATTTTGGGGAAGTATCATTATGTTCTCTACTTTCTGATATTGGCAATGCAGCCGAGAATGTTGCTAACTGTAGATGAGAATCTAAAGCCGTTGTCTGTCCCTGTTCGGGTCGGCCAAGCTGTGGATGTTGTTGGCCAGGCTGGTCGTCCCAAAACAATTACTGGCTTTCAGACCCACTCAACACCAGTTCTTTTGGCTGCCGGCGATAGAGCTGAGCTAGCGACTGAGAAGTATATTCCCCTTTCCCCAATCCTTGAAGGGTTTGTGATTTTGAAGGAAAATCCAGAGTATCGGGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

893

Amino Acids

98.13

Weight (kDa)

5.05

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN1_RPN2_N	PF17781	51 - 353	3.1e-125	RPN1 N-terminal domain
RPN1_C	PF18051	837 - 890	4.4e-31	26S proteasome non-ATPase regulatory subunit RPN1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	293, 2500
AciI	CCGC	7 cut(s)	30, 36, 42, 68, 71, 1251, 1823
AclWI	GGATC	5 cut(s)	8, 173, 179, 1394, 1436
AcoI	YGGCCR	4 cut(s)	1066, 1861, 2491, 2512
AcsI	RAATTY	3 cut(s)	228, 661, 761
AcuI	CTGAAG	4 cut(s)	411, 1056, 1773, 1962
AcyI	GRCGYC	1 cut(s)	1542
AdeI	CACNNNGTG	1 cut(s)	2333
AfaI	GTAC	5 cut(s)	235, 552, 1267, 1316, 1718
AfiI	CCNNNNNNNGG	7 cut(s)	188, 189, 293, 613, 2101, 2485, 2500
AgsI	TTSAA	8 cut(s)	142, 176, 767, 1222, 1761, 1850, 2636, 2653
AhlI	ACTAGT	2 cut(s)	242, 547
AjnI	CCWGG	3 cut(s)	709, 1899, 2514
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AloI	GAACNNNNNNTCC	2 cut(s)	1992, 2024
Alw26I	GTCTC	3 cut(s)	515, 683, 2042
AlwI	GGATC	5 cut(s)	8, 173, 179, 1394, 1436
Ama87I	CYCGRG	2 cut(s)	188, 1189
AoxI	GGCC	9 cut(s)	135, 454, 1023, 1066, 1743, 1861, 1903, 2491, 2512
ApaI	GGGCCC	1 cut(s)	1907
ApoI	RAATTY	3 cut(s)	228, 661, 761
ArsI	GACNNNNNNTTYG	2 cut(s)	1996, 2028
AspA2I	CCTAGG	1 cut(s)	1705
AspS9I	GGNCC	5 cut(s)	454, 713, 1651, 1903, 1904
AsuC2I	CCSGG	4 cut(s)	189, 190, 1070, 1294
AsuHPI	GGTGA	5 cut(s)	449, 679, 1901, 2056, 2310
AsuNHI	GCTAGC	1 cut(s)	2596
AvaI	CYCGRG	2 cut(s)	188, 1189
AvaII	GGWCC	2 cut(s)	713, 1651
AvrII	CCTAGG	1 cut(s)	1705
AxyI	CCTNAGG	1 cut(s)	2137
BaeGI	GKGCMC	1 cut(s)	1907
BalI	TGGCCA	2 cut(s)	1863, 2514
BanII	GRGCYC	3 cut(s)	60, 1680, 1907
BauI	CACGAG	1 cut(s)	1002
BbsI	GAAGAC	3 cut(s)	630, 1247, 1703
BccI	CCATC	7 cut(s)	428, 913, 1058, 1186, 1453, 1954, 2384
BceAI	ACGGC	2 cut(s)	253, 2452
BcgI	CGANNNNNNTGC	4 cut(s)	212, 246, 2422, 2456
BciT130I	CCWGG	3 cut(s)	711, 1901, 2516
BciVI	GTATCC	1 cut(s)	783
BcnI	CCSGG	4 cut(s)	189, 190, 1070, 1294
BcoDI	GTCTC	3 cut(s)	515, 683, 2042
BcuI	ACTAGT	2 cut(s)	242, 547
BfaI	CTAG	6 cut(s)	243, 548, 1086, 1475, 1706, 2597
BfmI	CTRYAG	3 cut(s)	785, 1988, 2448
BfuI	GTATCC	1 cut(s)	783
BlnI	CCTAGG	1 cut(s)	1705
BlpI	GCTNAGC	1 cut(s)	2592
BmcAI	AGTACT	1 cut(s)	1316
Bme1390I	CCNGG	7 cut(s)	189, 190, 711, 1070, 1294, 1901, 2516
Bme18I	GGWCC	2 cut(s)	713, 1651
BmeT110I	CYCGRG	2 cut(s)	188, 1189
BmgT120I	GGNCC	5 cut(s)	454, 713, 1651, 1903, 1904
BmiI	GGNNCC	4 cut(s)	455, 1677, 1905, 2158
BmrFI	CCNGG	7 cut(s)	189, 190, 711, 1070, 1294, 1901, 2516
BmsI	GCATC	5 cut(s)	14, 1174, 1211, 1990, 2206
BmtI	GCTAGC	1 cut(s)	2600
BpiI	GAAGAC	3 cut(s)	630, 1247, 1703
BpmI	CTGGAG	1 cut(s)	501
Bpu10I	CCTNAGC	1 cut(s)	1626
Bpu1102I	GCTNAGC	1 cut(s)	2592
BpuEI	CTTGAG	7 cut(s)	230, 477, 1826, 1901, 1976, 2182, 2232
BpuMI	CCSGG	4 cut(s)	189, 190, 1070, 1294
BsaAI	YACGTR	1 cut(s)	1514
BsaBI	GATNNNNATC	3 cut(s)	183, 1398, 2457
BsaHI	GRCGYC	1 cut(s)	1542
BsaI	GGTCTC	2 cut(s)	515, 2042
BsaJI	CCNNGG	5 cut(s)	188, 1584, 1705, 1720, 1900
BsaWI	WCCGGW	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	7 cut(s)	188, 189, 293, 613, 2101, 2485, 2500
Bse118I	RCCGGY	2 cut(s)	2320, 2579
Bse1I	ACTGG	6 cut(s)	690, 1217, 1245, 1413, 2545, 2564
Bse21I	CCTNAGG	1 cut(s)	2137
Bse3DI	GCAATG	6 cut(s)	947, 1333, 1618, 1941, 2124, 2430
Bse8I	GATNNNNATC	3 cut(s)	183, 1398, 2457
BseBI	CCWGG	3 cut(s)	711, 1901, 2516
BseDI	CCNNGG	5 cut(s)	188, 1584, 1705, 1720, 1900
BseGI	GGATG	4 cut(s)	876, 1288, 2221, 2509
BseJI	GATNNNNATC	3 cut(s)	183, 1398, 2457
BseLI	CCNNNNNNNGG	7 cut(s)	188, 189, 293, 613, 2101, 2485, 2500
BseMI	GCAATG	6 cut(s)	947, 1333, 1618, 1941, 2124, 2430
BseMII	CTCAG	8 cut(s)	270, 991, 1488, 1640, 1656, 1714, 2583, 2595
BseNI	ACTGG	6 cut(s)	690, 1217, 1245, 1413, 2545, 2564
BseRI	GAGGAG	1 cut(s)	1631
BseSI	GKGCMC	1 cut(s)	1907
BshFI	GGCC	9 cut(s)	137, 456, 1025, 1068, 1745, 1863, 1905, 2493, 2514
BsiHKCI	CYCGRG	2 cut(s)	188, 1189
BsiSI	CCGG	6 cut(s)	189, 593, 1069, 1293, 2321, 2580
BslFI	GGGAC	4 cut(s)	1160, 1965, 2462, 2511
BslI	CCNNNNNNNGG	7 cut(s)	188, 189, 293, 613, 2101, 2485, 2500
BsmAI	GTCTC	3 cut(s)	515, 683, 2042
BsmFI	GGGAC	4 cut(s)	1160, 1965, 2462, 2511
BsmI	GAATGC	1 cut(s)	743
BsnI	GGCC	9 cut(s)	137, 456, 1025, 1068, 1745, 1863, 1905, 2493, 2514
Bso31I	GGTCTC	2 cut(s)	515, 2042
BsoBI	CYCGRG	2 cut(s)	188, 1189
Bsp120I	GGGCCC	1 cut(s)	1903
Bsp1286I	GDGCHC	3 cut(s)	60, 1680, 1907
Bsp143I	GATC	9 cut(s)	13, 178, 184, 535, 631, 847, 1399, 1441, 2302
Bsp1720I	GCTNAGC	1 cut(s)	2592
BspACI	CCGC	7 cut(s)	30, 36, 42, 68, 71, 1251, 1823
BspANI	GGCC	9 cut(s)	137, 456, 1025, 1068, 1745, 1863, 1905, 2493, 2514
BspCNI	CTCAG	8 cut(s)	269, 990, 1489, 1639, 1657, 1713, 2584, 2596
BspHI	TCATGA	2 cut(s)	747, 1771
BspLI	GGNNCC	4 cut(s)	455, 1677, 1905, 2158
BspMAI	CTGCAG	1 cut(s)	789
BspOI	GCTAGC	1 cut(s)	2600
BspPI	GGATC	5 cut(s)	8, 173, 179, 1394, 1436
BspTNI	GGTCTC	2 cut(s)	515, 2042
BsrDI	GCAATG	6 cut(s)	947, 1333, 1618, 1941, 2124, 2430
BsrFI	RCCGGY	2 cut(s)	2320, 2579
BsrI	ACTGG	6 cut(s)	690, 1217, 1245, 1413, 2545, 2564
BssAI	RCCGGY	2 cut(s)	2320, 2579
BssECI	CCNNGG	5 cut(s)	188, 1584, 1705, 1720, 1900
BssMI	GATC	9 cut(s)	13, 178, 184, 535, 631, 847, 1399, 1441, 2302
BssNI	GRCGYC	1 cut(s)	1542
BssSI	CACGAG	1 cut(s)	1002
BssT1I	CCWWGG	3 cut(s)	1584, 1705, 1720
Bst2BI	CACGAG	1 cut(s)	1002
Bst2UI	CCWGG	3 cut(s)	711, 1901, 2516
Bst4CI	ACNGT	5 cut(s)	1174, 1278, 1992, 2068, 2449
Bst6I	CTCTTC	4 cut(s)	762, 1938, 2234, 2670
BstACI	GRCGYC	1 cut(s)	1542
BstBAI	YACGTR	1 cut(s)	1514
BstC8I	GCNNGC	8 cut(s)	34, 47, 1147, 1687, 2221, 2355, 2581, 2598
BstEII	GGTNACC	1 cut(s)	2062
BstF5I	GGATG	4 cut(s)	876, 1288, 2221, 2509
BstKTI	GATC	9 cut(s)	16, 181, 187, 538, 634, 850, 1402, 1444, 2305
BstMAI	GTCTC	3 cut(s)	515, 683, 2042
BstMBI	GATC	9 cut(s)	13, 178, 184, 535, 631, 847, 1399, 1441, 2302
BstMWI	GCNNNNNNNGC	8 cut(s)	42, 55, 862, 1931, 2091, 2123, 2174, 2597
BstNI	CCWGG	3 cut(s)	711, 1901, 2516
BstNSI	RCATGY	3 cut(s)	650, 2357, 2361
BstPI	GGTNACC	1 cut(s)	2062
BstSCI	CCNGG	7 cut(s)	187, 188, 709, 1068, 1292, 1899, 2514
BstSFI	CTRYAG	3 cut(s)	785, 1988, 2448
BstSLI	GKGCMC	1 cut(s)	1907
BstSNI	TACGTA	1 cut(s)	1514
BstV2I	GAAGAC	3 cut(s)	630, 1247, 1703
BstX2I	RGATCY	3 cut(s)	13, 178, 1441
BstXI	CCANNNNNNTGG	1 cut(s)	2383
BstYI	RGATCY	3 cut(s)	13, 178, 1441
Bsu36I	CCTNAGG	1 cut(s)	2137
BsuI	GTATCC	1 cut(s)	783
BsuRI	GGCC	9 cut(s)	137, 456, 1025, 1068, 1745, 1863, 1905, 2493, 2514
BtgZI	GCGATG	1 cut(s)	1940
BtsCI	GGATG	4 cut(s)	876, 1288, 2221, 2509
BtsI	GCAGTG	1 cut(s)	782
BtsIMutI	CAGTG	4 cut(s)	782, 985, 1252, 1406
Cac8I	GCNNGC	8 cut(s)	34, 47, 1147, 1687, 2221, 2355, 2581, 2598
CciI	TCATGA	2 cut(s)	747, 1771
Cfr10I	RCCGGY	2 cut(s)	2320, 2579
Cfr13I	GGNCC	5 cut(s)	454, 713, 1651, 1903, 1904
Cfr9I	CCCGGG	1 cut(s)	188
CseI	GACGC	2 cut(s)	1550, 1670
Csp6I	GTAC	5 cut(s)	234, 551, 1266, 1315, 1717
CviQI	GTAC	5 cut(s)	234, 551, 1266, 1315, 1717
DpnI	GATC	9 cut(s)	15, 180, 186, 537, 633, 849, 1401, 1443, 2304
DpnII	GATC	9 cut(s)	13, 178, 184, 535, 631, 847, 1399, 1441, 2302
DraIII	CACNNNGTG	1 cut(s)	2333
EaeI	YGGCCR	4 cut(s)	1066, 1861, 2491, 2512
Eam1104I	CTCTTC	4 cut(s)	762, 1938, 2234, 2670
EarI	CTCTTC	4 cut(s)	762, 1938, 2234, 2670
Eco105I	TACGTA	1 cut(s)	1514
Eco130I	CCWWGG	3 cut(s)	1584, 1705, 1720
Eco24I	GRGCYC	3 cut(s)	60, 1680, 1907
Eco31I	GGTCTC	2 cut(s)	515, 2042
Eco47I	GGWCC	2 cut(s)	713, 1651
Eco57I	CTGAAG	4 cut(s)	411, 1056, 1773, 1962
Eco81I	CCTNAGG	1 cut(s)	2137
Eco88I	CYCGRG	2 cut(s)	188, 1189
Eco91I	GGTNACC	1 cut(s)	2062
EcoO109I	RGGNCCY	2 cut(s)	1903, 1904
EcoO65I	GGTNACC	1 cut(s)	2062
EcoRII	CCWGG	3 cut(s)	709, 1899, 2514
EcoT14I	CCWWGG	3 cut(s)	1584, 1705, 1720
EcoT22I	ATGCAT	2 cut(s)	1135, 2359
EcoT38I	GRGCYC	3 cut(s)	60, 1680, 1907
ErhI	CCWWGG	3 cut(s)	1584, 1705, 1720
FalI	AAGNNNNNCTT	6 cut(s)	975, 1007, 1040, 1072, 1539, 1571
FaqI	GGGAC	4 cut(s)	1160, 1965, 2462, 2511
FauI	CCCGC	1 cut(s)	1816
FauNDI	CATATG	1 cut(s)	1486
FokI	GGATG	4 cut(s)	863, 1295, 2228, 2516
FriOI	GRGCYC	3 cut(s)	60, 1680, 1907
FspBI	CTAG	6 cut(s)	243, 548, 1086, 1475, 1706, 2597
GsuI	CTGGAG	1 cut(s)	501
HaeIII	GGCC	9 cut(s)	137, 456, 1025, 1068, 1745, 1863, 1905, 2493, 2514
HapII	CCGG	6 cut(s)	189, 593, 1069, 1293, 2321, 2580
HgaI	GACGC	2 cut(s)	1550, 1670
Hin1I	GRCGYC	1 cut(s)	1542
HincII	GTYRAC	2 cut(s)	604, 1288
HindII	GTYRAC	2 cut(s)	604, 1288
HindIII	AAGCTT	1 cut(s)	406
HpaII	CCGG	6 cut(s)	189, 593, 1069, 1293, 2321, 2580
HphI	GGTGA	5 cut(s)	449, 679, 1901, 2056, 2310
Hpy166II	GTNNAC	3 cut(s)	604, 1288, 1871
Hpy8I	GTNNAC	3 cut(s)	604, 1288, 1871
Hpy99I	CGWCG	1 cut(s)	2016
HpyAV	CCTTC	9 cut(s)	100, 193, 386, 716, 977, 1865, 1879, 2630, 2647
HpyCH4III	ACNGT	5 cut(s)	1174, 1278, 1992, 2068, 2449
HpyCH4IV	ACGT	1 cut(s)	1513
HpyF10VI	GCNNNNNNNGC	8 cut(s)	42, 55, 862, 1931, 2091, 2123, 2174, 2597
HpySE526I	ACGT	1 cut(s)	1513
Hsp92I	GRCGYC	1 cut(s)	1542
KroI	GCCGGC	1 cut(s)	2579
KroNI	GCCGGC	1 cut(s)	2581
Kzo9I	GATC	9 cut(s)	13, 178, 184, 535, 631, 847, 1399, 1441, 2302
LmnI	GCTCC	4 cut(s)	1231, 1555, 1675, 1978
LweI	GCATC	5 cut(s)	14, 1174, 1211, 1990, 2206
MaeI	CTAG	6 cut(s)	243, 548, 1086, 1475, 1706, 2597
MaeII	ACGT	1 cut(s)	1513
MaeIII	GTNAC	3 cut(s)	872, 1658, 2062
MalI	GATC	9 cut(s)	15, 180, 186, 537, 633, 849, 1401, 1443, 2304
MboI	GATC	9 cut(s)	13, 178, 184, 535, 631, 847, 1399, 1441, 2302
MfeI	CAATTG	2 cut(s)	149, 1375
MflI	RGATCY	3 cut(s)	13, 178, 1441
MhlI	GDGCHC	3 cut(s)	60, 1680, 1907
MlsI	TGGCCA	2 cut(s)	1863, 2514
MluNI	TGGCCA	2 cut(s)	1863, 2514
MlyI	GAGTC	4 cut(s)	1283, 1519, 1795, 2275
Mox20I	TGGCCA	2 cut(s)	1863, 2514
Mph1103I	ATGCAT	2 cut(s)	1135, 2359
MroNI	GCCGGC	1 cut(s)	2579
MscI	TGGCCA	2 cut(s)	1863, 2514
MseI	TTAA	7 cut(s)	272, 410, 611, 666, 909, 1128, 2081
MslI	CAYNNNNRTG	4 cut(s)	462, 1326, 2069, 2345
Msp20I	TGGCCA	2 cut(s)	1863, 2514
MspA1I	CMGCKG	2 cut(s)	42, 1751
MspI	CCGG	6 cut(s)	189, 593, 1069, 1293, 2321, 2580
MspR9I	CCNGG	7 cut(s)	189, 190, 711, 1070, 1294, 1901, 2516
MunI	CAATTG	2 cut(s)	149, 1375
Mva1269I	GAATGC	1 cut(s)	743
MvaI	CCWGG	3 cut(s)	711, 1901, 2516
MwoI	GCNNNNNNNGC	8 cut(s)	42, 55, 862, 1931, 2091, 2123, 2174, 2597
NaeI	GCCGGC	1 cut(s)	2581
NciI	CCSGG	4 cut(s)	189, 190, 1070, 1294
NdeI	CATATG	1 cut(s)	1486
NdeII	GATC	9 cut(s)	13, 178, 184, 535, 631, 847, 1399, 1441, 2302
NgoMIV	GCCGGC	1 cut(s)	2579
NheI	GCTAGC	1 cut(s)	2596
NlaIV	GGNNCC	4 cut(s)	455, 1677, 1905, 2158
NmeAIII	GCCGAG	1 cut(s)	2457
NmuCI	GTSAC	2 cut(s)	1658, 2062
NsiI	ATGCAT	2 cut(s)	1135, 2359
NspI	RCATGY	3 cut(s)	650, 2357, 2361
PaeI	GCATGC	1 cut(s)	2357
PaeR7I	CTCGAG	1 cut(s)	1189
PagI	TCATGA	2 cut(s)	747, 1771
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PctI	GAATGC	1 cut(s)	743
PdiI	GCCGGC	1 cut(s)	2581
PfeI	GAWTC	6 cut(s)	83, 329, 1094, 2105, 2337, 2458
PflFI	GACNNNGTC	1 cut(s)	382
PflMI	CCANNNNNTGG	2 cut(s)	293, 2500
PfoI	TCCNGGA	1 cut(s)	709
PleI	GAGTC	4 cut(s)	1283, 1519, 1795, 2275
PpsI	GAGTC	4 cut(s)	1283, 1519, 1795, 2275
Ppu21I	YACGTR	1 cut(s)	1514
Psp6I	CCWGG	3 cut(s)	709, 1899, 2514
PspEI	GGTNACC	1 cut(s)	2062
PspGI	CCWGG	3 cut(s)	709, 1899, 2514
PspN4I	GGNNCC	4 cut(s)	455, 1677, 1905, 2158
PspOMI	GGGCCC	1 cut(s)	1903
PspPI	GGNCC	5 cut(s)	454, 713, 1651, 1903, 1904
PspXI	VCTCGAGB	1 cut(s)	1189
PstI	CTGCAG	1 cut(s)	789
PsuI	RGATCY	3 cut(s)	13, 178, 1441
PsyI	GACNNNGTC	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	1751
RsaI	GTAC	5 cut(s)	235, 552, 1267, 1316, 1718
RsaNI	GTAC	5 cut(s)	234, 551, 1266, 1315, 1717
RseI	CAYNNNNRTG	4 cut(s)	462, 1326, 2069, 2345
SaqAI	TTAA	7 cut(s)	272, 410, 611, 666, 909, 1128, 2081
Sau3AI	GATC	9 cut(s)	13, 178, 184, 535, 631, 847, 1399, 1441, 2302
Sau96I	GGNCC	5 cut(s)	454, 713, 1651, 1903, 1904
ScaI	AGTACT	1 cut(s)	1316
SchI	GAGTC	4 cut(s)	1283, 1519, 1795, 2275
ScrFI	CCNGG	7 cut(s)	189, 190, 711, 1070, 1294, 1901, 2516
SduI	GDGCHC	3 cut(s)	60, 1680, 1907
SfaNI	GCATC	5 cut(s)	14, 1174, 1211, 1990, 2206
SfcI	CTRYAG	3 cut(s)	785, 1988, 2448
Sfr274I	CTCGAG	1 cut(s)	1189
SinI	GGWCC	2 cut(s)	713, 1651
SlaI	CTCGAG	1 cut(s)	1189
SmaI	CCCGGG	1 cut(s)	190
SmiMI	CAYNNNNRTG	4 cut(s)	462, 1326, 2069, 2345
SmlI	CTYRAG	8 cut(s)	209, 492, 1189, 1841, 1880, 1955, 2197, 2247
SmoI	CTYRAG	8 cut(s)	209, 492, 1189, 1841, 1880, 1955, 2197, 2247
SnaBI	TACGTA	1 cut(s)	1514
SpeI	ACTAGT	2 cut(s)	242, 547
SphI	GCATGC	1 cut(s)	2357
SsiI	CCGC	7 cut(s)	30, 36, 42, 68, 71, 1251, 1823
SspMI	CTAG	6 cut(s)	243, 548, 1086, 1475, 1706, 2597
StyD4I	CCNGG	7 cut(s)	187, 188, 709, 1068, 1292, 1899, 2514
StyI	CCWWGG	3 cut(s)	1584, 1705, 1720
TaaI	ACNGT	5 cut(s)	1174, 1278, 1992, 2068, 2449
TaiI	ACGT	1 cut(s)	1516
TaqI	TCGA	1 cut(s)	1190
TaqII	GACCGA	1 cut(s)	1668
TatI	WGTACW	2 cut(s)	550, 1314
TauI	GCSGC	5 cut(s)	32, 39, 45, 73, 1253
TfiI	GAWTC	6 cut(s)	83, 329, 1094, 2105, 2337, 2458
Tru1I	TTAA	7 cut(s)	272, 410, 611, 666, 909, 1128, 2081
Tru9I	TTAA	7 cut(s)	272, 410, 611, 666, 909, 1128, 2081
TscAI	CASTG	4 cut(s)	789, 985, 1252, 1413
TseFI	GTSAC	2 cut(s)	1658, 2062
Tsp45I	GTSAC	2 cut(s)	1658, 2062
TspGWI	ACGGA	2 cut(s)	2000, 2117
TspMI	CCCGGG	1 cut(s)	188
TspRI	CASTG	4 cut(s)	789, 985, 1252, 1413
Tth111I	GACNNNGTC	1 cut(s)	382
Van91I	CCANNNNNTGG	2 cut(s)	293, 2500
VpaK11BI	GGWCC	2 cut(s)	713, 1651
XapI	RAATTY	3 cut(s)	228, 661, 761
XceI	RCATGY	3 cut(s)	650, 2357, 2361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1343
XhoI	CTCGAG	1 cut(s)	1189
XmaI	CCCGGG	1 cut(s)	188
XmaJI	CCTAGG	1 cut(s)	1705
XspI	CTAG	6 cut(s)	243, 548, 1086, 1475, 1706, 2597
ZrmI	AGTACT	1 cut(s)	1316
Zsp2I	ATGCAT	2 cut(s)	1135, 2359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.