Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Forward (+)

11290068 .. 11298675

Gene Structure 8608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G007010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTCTTGGAAAAGATGGAAGACGGTGTCCAAAACAATGGAGATAATTCGGAACAAGGATTTGGAGGAAGACTTTACTTATGTGTGGTCCGACGAAGATTTGGCCTTGAAGCAACAATTGGAGTTGTATGTGGAGAGGGTTCAAGATCCGGATCCCGGGTTGCAGAAGGTTGCCCTTGAGAGTATGAGGCAGGAAATTCGTACCTCAACTAGTTCCATGACCTCAGTTCCAAAAGCCGTTAAAATATCTTCGCCCGCATTACGGAACTCTAAAAATATACTGTCGGTTTTGGCATTGACCATGTCTGCTGAAGGAGAACGGTTTAGATTATTGGGTTCAGACGGTGATATTGGTTCATGGGAAATTACTCAAGAATATGCCAAGCGACAGCCATTGCTCATAATTGTAGTGGTGCTAGTACAACAAATAGTTGCCTTTCACATGAGGCACAATGCCGAACCGGAAGTTGTTGACCTTTTAATGGAGAATATTTTGTCAACATACGTGGAAGACCTTGATCTGTTAGTTGAGCATGTTGATAAGACAAATTTTAAGAGGACTTGTCTCTACCTCACCAGTTCGACAAGATACCTTCCTGGACCAGATGATATGTTAGTTTTGGATATTGCATTCATGATATATCTGAAATTTGAAGAGTATCCAAATGCACTTCAGATTGCTCTTTTCCTCGACAATAAGGAGTTTGTAAAGCAAGTCTTTACCTCTTGTGATGATCTGCTGCGTAAAAACCAATTCTGTTACATCCTTGCTAGACATGGTAGTAATTTTGAGCTTAACGATGAGATGGTTGCAGAAGATGAAGAAAGAGAAGCATTGCAGGACATTATCAATAACGCTAAACTCAGTGAAGGTTATCTTACCCTTGCTCGTGCTATTGAGGTCATGGAGGCCAAAACTCCAGAAGATATTTACAAGGTTTTGAACTTTTCATTTCATGTCATAGATCTGACACTTAATGGATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

328

Amino Acids

37.87

Weight (kDa)

4.78

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN1_RPN2_N	PF17781	40 - 313	5.3e-72	RPN1 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	148
AciI	CCGC	1 cut(s)	255
AclWI	GGATC	3 cut(s)	140, 146, 159
AcsI	RAATTY	3 cut(s)	195, 547, 647
AcuI	CTGAAG	2 cut(s)	330, 656
AfaI	GTAC	2 cut(s)	202, 420
AfiI	CCNNNNNNNGG	3 cut(s)	155, 261, 481
AgsI	TTSAA	4 cut(s)	109, 143, 653, 943
AhlI	ACTAGT	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	595
AjuI	GAANNNNNNNTTGG	4 cut(s)	44, 76, 101, 133
AluBI	AGCT	1 cut(s)	793
AluI	AGCT	1 cut(s)	793
Alw26I	GTCTC	1 cut(s)	569
AlwI	GGATC	3 cut(s)	140, 146, 159
Ama87I	CYCGRG	1 cut(s)	155
Aor13HI	TCCGGA	1 cut(s)	148
AoxI	GGCC	2 cut(s)	102, 909
ApeKI	GCWGC	1 cut(s)	739
ApoI	RAATTY	3 cut(s)	195, 547, 647
AspS9I	GGNCC	2 cut(s)	87, 599
AsuC2I	CCSGG	2 cut(s)	156, 157
AsuHPI	GGTGA	2 cut(s)	356, 565
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	87, 599
BamHI	GGATCC	1 cut(s)	151
BauI	CACGAG	1 cut(s)	888
BbsI	GAAGAC	3 cut(s)	26, 75, 516
BbvI	GCAGC	1 cut(s)	726
BccI	CCATC	2 cut(s)	9, 799
BceAI	ACGGC	1 cut(s)	221
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BciT130I	CCWGG	1 cut(s)	597
BciVI	GTATCC	2 cut(s)	669, 974
BcnI	CCSGG	2 cut(s)	156, 157
BcoDI	GTCTC	1 cut(s)	569
BcuI	ACTAGT	1 cut(s)	209
BfaI	CTAG	4 cut(s)	210, 416, 771, 985
BfuI	GTATCC	2 cut(s)	669, 974
BglII	AGATCT	1 cut(s)	964
BisI	GCNGC	1 cut(s)	740
BlsI	GCNGC	1 cut(s)	741
Bme1390I	CCNGG	3 cut(s)	156, 157, 597
Bme18I	GGWCC	2 cut(s)	87, 599
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	2 cut(s)	87, 599
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	3 cut(s)	156, 157, 597
BpiI	GAAGAC	3 cut(s)	26, 75, 516
BpmI	CTGGAG	1 cut(s)	903
BpuEI	CTTGAG	2 cut(s)	197, 354
BpuMI	CCSGG	2 cut(s)	156, 157
BsaAI	YACGTR	1 cut(s)	505
BsaBI	GATNNNNATC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	155
BsaWI	WCCGGW	2 cut(s)	148, 460
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 261, 481
Bse1I	ACTGG	1 cut(s)	576
Bse3DI	GCAATG	2 cut(s)	392, 833
Bse8I	GATNNNNATC	1 cut(s)	150
BseAI	TCCGGA	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	597
BseDI	CCNNGG	1 cut(s)	155
BseGI	GGATG	1 cut(s)	762
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	3 cut(s)	155, 261, 481
BseMI	GCAATG	2 cut(s)	392, 833
BseMII	CTCAG	2 cut(s)	237, 877
BseNI	ACTGG	1 cut(s)	576
BseXI	GCAGC	1 cut(s)	726
BshFI	GGCC	2 cut(s)	104, 911
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	3 cut(s)	149, 156, 461
BslI	CCNNNNNNNGG	3 cut(s)	155, 261, 481
BsmAI	GTCTC	1 cut(s)	569
BsmI	GAATGC	1 cut(s)	629
BsnI	GGCC	2 cut(s)	104, 911
BsoBI	CYCGRG	1 cut(s)	155
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	5 cut(s)	145, 151, 517, 733, 964
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	2 cut(s)	104, 911
BspCNI	CTCAG	2 cut(s)	236, 876
BspEI	TCCGGA	1 cut(s)	148
BspHI	TCATGA	1 cut(s)	633
BspLI	GGNNCC	1 cut(s)	153
BspPI	GGATC	3 cut(s)	140, 146, 159
BsrDI	GCAATG	2 cut(s)	392, 833
BsrI	ACTGG	1 cut(s)	576
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	5 cut(s)	145, 151, 517, 733, 964
BssSI	CACGAG	1 cut(s)	888
Bst2BI	CACGAG	1 cut(s)	888
Bst2UI	CCWGG	1 cut(s)	597
Bst4CI	ACNGT	4 cut(s)	25, 282, 321, 344
Bst6I	CTCTTC	1 cut(s)	648
BstBAI	YACGTR	1 cut(s)	505
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	223, 863
BstF5I	GGATG	1 cut(s)	762
BstKTI	GATC	5 cut(s)	148, 154, 520, 736, 967
BstMAI	GTCTC	1 cut(s)	569
BstMBI	GATC	5 cut(s)	145, 151, 517, 733, 964
BstNI	CCWGG	1 cut(s)	597
BstNSI	RCATGY	1 cut(s)	536
BstSCI	CCNGG	3 cut(s)	154, 155, 595
BstV1I	GCAGC	1 cut(s)	726
BstV2I	GAAGAC	3 cut(s)	26, 75, 516
BstX2I	RGATCY	3 cut(s)	145, 151, 964
BstXI	CCANNNNNNTGG	1 cut(s)	37
BstYI	RGATCY	3 cut(s)	145, 151, 964
BsuI	GTATCC	2 cut(s)	669, 974
BsuRI	GGCC	2 cut(s)	104, 911
BtsCI	GGATG	1 cut(s)	762
BtsIMutI	CAGTG	1 cut(s)	871
Cac8I	GCNNGC	1 cut(s)	255
CciI	TCATGA	1 cut(s)	633
Cfr13I	GGNCC	2 cut(s)	87, 599
Cfr9I	CCCGGG	1 cut(s)	155
Csp6I	GTAC	2 cut(s)	201, 419
CspCI	CAANNNNNGTGG	2 cut(s)	486, 521
CviAII	CATG	9 cut(s)	217, 301, 357, 442, 533, 634, 776, 904, 956
CviJI	RGCY	5 cut(s)	104, 236, 391, 793, 911
CviKI_1	RGCY	5 cut(s)	104, 236, 391, 793, 911
CviQI	GTAC	2 cut(s)	201, 419
DdeI	CTNAG	2 cut(s)	223, 863
DpnI	GATC	5 cut(s)	147, 153, 519, 735, 966
DpnII	GATC	5 cut(s)	145, 151, 517, 733, 964
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Eco47I	GGWCC	2 cut(s)	87, 599
Eco57I	CTGAAG	2 cut(s)	330, 656
Eco88I	CYCGRG	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	595
FaeI	CATG	9 cut(s)	220, 304, 360, 445, 536, 637, 779, 907, 959
FalI	AAGNNNNNCTT	4 cut(s)	701, 733, 861, 893
FatI	CATG	9 cut(s)	216, 300, 356, 441, 532, 633, 775, 903, 955
FauI	CCCGC	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	740
FokI	GGATG	1 cut(s)	749
Fsp4HI	GCNGC	1 cut(s)	740
FspBI	CTAG	4 cut(s)	210, 416, 771, 985
GluI	GCNGC	1 cut(s)	740
GsuI	CTGGAG	1 cut(s)	903
HaeIII	GGCC	2 cut(s)	104, 911
HapII	CCGG	3 cut(s)	149, 156, 461
Hin1II	CATG	9 cut(s)	220, 304, 360, 445, 536, 637, 779, 907, 959
HincII	GTYRAC	2 cut(s)	472, 498
HindII	GTYRAC	2 cut(s)	472, 498
HpaII	CCGG	3 cut(s)	149, 156, 461
HphI	GGTGA	2 cut(s)	356, 565
Hpy166II	GTNNAC	2 cut(s)	472, 498
Hpy188I	TCNGA	6 cut(s)	51, 91, 340, 645, 675, 969
Hpy188III	TCNNGA	5 cut(s)	143, 149, 371, 634, 920
Hpy8I	GTNNAC	2 cut(s)	472, 498
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	4 cut(s)	160, 305, 602, 863
HpyCH4III	ACNGT	4 cut(s)	25, 282, 321, 344
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	5 cut(s)	163, 629, 668, 812, 838
HpyF3I	CTNAG	2 cut(s)	223, 863
HpySE526I	ACGT	1 cut(s)	504
Hsp92II	CATG	9 cut(s)	220, 304, 360, 445, 536, 637, 779, 907, 959
Kpn2I	TCCGGA	1 cut(s)	148
Kzo9I	GATC	5 cut(s)	145, 151, 517, 733, 964
Lsp1109I	GCAGC	1 cut(s)	726
MaeI	CTAG	4 cut(s)	210, 416, 771, 985
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	1 cut(s)	758
MalI	GATC	5 cut(s)	147, 153, 519, 735, 966
MboI	GATC	5 cut(s)	145, 151, 517, 733, 964
MboII	GAAGA	9 cut(s)	31, 80, 107, 240, 521, 665, 827, 833, 935
MfeI	CAATTG	1 cut(s)	116
MflI	RGATCY	3 cut(s)	145, 151, 964
MluCI	AATT	9 cut(s)	45, 116, 195, 363, 402, 547, 647, 752, 784
MmeI	TCCRAC	1 cut(s)	114
MroI	TCCGGA	1 cut(s)	148
MseI	TTAA	5 cut(s)	240, 479, 552, 795, 975
MspI	CCGG	3 cut(s)	149, 156, 461
MspR9I	CCNGG	3 cut(s)	156, 157, 597
MunI	CAATTG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	629
MvaI	CCWGG	1 cut(s)	597
NciI	CCSGG	2 cut(s)	156, 157
NdeII	GATC	5 cut(s)	145, 151, 517, 733, 964
NlaIII	CATG	9 cut(s)	220, 304, 360, 445, 536, 637, 779, 907, 959
NlaIV	GGNNCC	1 cut(s)	153
NspI	RCATGY	1 cut(s)	536
PagI	TCATGA	1 cut(s)	633
PctI	GAATGC	1 cut(s)	629
PflFI	GACNNNGTC	2 cut(s)	25, 301
PfoI	TCCNGGA	1 cut(s)	595
PkrI	GCNGC	1 cut(s)	741
Ppu21I	YACGTR	1 cut(s)	505
Psp6I	CCWGG	1 cut(s)	595
PspGI	CCWGG	1 cut(s)	595
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	2 cut(s)	87, 599
PsuI	RGATCY	3 cut(s)	145, 151, 964
PsyI	GACNNNGTC	2 cut(s)	25, 301
RsaI	GTAC	2 cut(s)	202, 420
RsaNI	GTAC	2 cut(s)	201, 419
SaqAI	TTAA	5 cut(s)	240, 479, 552, 795, 975
SatI	GCNGC	1 cut(s)	740
Sau3AI	GATC	5 cut(s)	145, 151, 517, 733, 964
Sau96I	GGNCC	2 cut(s)	87, 599
ScrFI	CCNGG	3 cut(s)	156, 157, 597
SinI	GGWCC	2 cut(s)	87, 599
SmaI	CCCGGG	1 cut(s)	157
SmlI	CTYRAG	2 cut(s)	176, 369
SmoI	CTYRAG	2 cut(s)	176, 369
SpeI	ACTAGT	1 cut(s)	209
Sse9I	AATT	9 cut(s)	45, 116, 195, 363, 402, 547, 647, 752, 784
SsiI	CCGC	1 cut(s)	255
SspI	AATATT	1 cut(s)	490
SspMI	CTAG	4 cut(s)	210, 416, 771, 985
StyD4I	CCNGG	3 cut(s)	154, 155, 595
TaaI	ACNGT	4 cut(s)	25, 282, 321, 344
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	2 cut(s)	581, 690
TasI	AATT	9 cut(s)	45, 116, 195, 363, 402, 547, 647, 752, 784
TatI	WGTACW	1 cut(s)	418
Tru1I	TTAA	5 cut(s)	240, 479, 552, 795, 975
Tru9I	TTAA	5 cut(s)	240, 479, 552, 795, 975
TscAI	CASTG	1 cut(s)	871
TseI	GCWGC	1 cut(s)	739
TspDTI	ATGAA	5 cut(s)	345, 622, 834, 939, 944
TspGWI	ACGGA	1 cut(s)	277
TspMI	CCCGGG	1 cut(s)	155
TspRI	CASTG	1 cut(s)	871
Tth111I	GACNNNGTC	2 cut(s)	25, 301
VpaK11BI	GGWCC	2 cut(s)	87, 599
XapI	RAATTY	3 cut(s)	195, 547, 647
XceI	RCATGY	1 cut(s)	536
XmaI	CCCGGG	1 cut(s)	155
XspI	CTAG	4 cut(s)	210, 416, 771, 985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.