Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Forward (+)

11369288 .. 11370460

Gene Structure 1173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22957

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCCAAGCCGCCGGGCACCTCCAGATGCAAAACCATACCTTCCTGGACCAGATGATATGTTAGTTTTGGATATTGCATTCATGATATATCTGAAATTTGAAGAGTATCCAAATGCACTTCAGATTGCTCTTTTCCTCGACAATAAGGAGTTTGTAAAGCAAGTCTTTACCTCTTGTGATGATCTGCTGCGGAAAAAGCAATTCTGTTACATCCTTGCCAGACATGGTAGTAATTTTGAGCTTAACGATGAGATGGTTGCAGAAGATGAAGAAAGAGAAGCATTGCAGGACATTATCAATAACGCTAAACTCAGTGAAGGTTATCTTACCCTTGCTCGTGATATTGAGCTCATGGAGGCCAAAACTCCAGAAGATATATACAAGGGTTTGAACTTTTCATTTCATGTCATAGATCTGACACTTAATGGATATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

145

Amino Acids

16.81

Weight (kDa)

4.54

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN1_RPN2_N	PF17781	12 - 128	5.9e-36	RPN1 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	16
AciI	CCGC	2 cut(s)	10, 190
AcsI	RAATTY	1 cut(s)	95
AcuI	CTGAAG	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	101, 391
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	2 cut(s)	241, 349
AluI	AGCT	2 cut(s)	241, 349
Alw21I	GWGCWC	1 cut(s)	351
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	1 cut(s)	187
ApoI	RAATTY	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	47
AsuC2I	CCSGG	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	351
BauI	CACGAG	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	1 cut(s)	247
BciT130I	CCWGG	1 cut(s)	45
BciVI	GTATCC	1 cut(s)	117
BcnI	CCSGG	1 cut(s)	14
BfuI	GTATCC	1 cut(s)	117
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	2 cut(s)	10, 188
BlsI	GCNGC	2 cut(s)	11, 189
Bme1390I	CCNGG	2 cut(s)	14, 45
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	2 cut(s)	14, 45
BmsI	GCATC	1 cut(s)	16
BpmI	CTGGAG	2 cut(s)	6, 351
BpuMI	CCSGG	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	210
BseMI	GCAATG	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	325
BseSI	GKGCMC	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	174
BshFI	GGCC	1 cut(s)	359
BshNI	GGYRCC	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	13
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	359
Bsp1286I	GDGCHC	2 cut(s)	19, 351
Bsp143I	GATC	2 cut(s)	181, 412
BspACI	CCGC	2 cut(s)	10, 190
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	1 cut(s)	324
BspHI	TCATGA	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	18
BspT107I	GGYRCC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	281
BssMI	GATC	2 cut(s)	181, 412
BssSI	CACGAG	1 cut(s)	336
Bst2BI	CACGAG	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	45
Bst6I	CTCTTC	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	311
BstF5I	GGATG	1 cut(s)	210
BstKTI	GATC	2 cut(s)	184, 415
BstMBI	GATC	2 cut(s)	181, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	2 cut(s)	12, 43
BstSLI	GKGCMC	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BsuI	GTATCC	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	359
BtsCI	GGATG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	319
CciI	TCATGA	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	47
CviAII	CATG	4 cut(s)	82, 224, 352, 404
CviJI	RGCY	4 cut(s)	9, 241, 349, 359
CviKI_1	RGCY	4 cut(s)	9, 241, 349, 359
DdeI	CTNAG	1 cut(s)	311
DpnI	GATC	2 cut(s)	183, 414
DpnII	GATC	2 cut(s)	181, 412
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	349
Eco24I	GRGCYC	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	104
EcoICRI	GAGCTC	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	351
FaeI	CATG	4 cut(s)	85, 227, 355, 407
FalI	AAGNNNNNCTT	4 cut(s)	149, 181, 309, 341
FatI	CATG	4 cut(s)	81, 223, 351, 403
Fnu4HI	GCNGC	2 cut(s)	10, 188
FokI	GGATG	1 cut(s)	197
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	2 cut(s)	10, 188
GluI	GCNGC	2 cut(s)	10, 188
GsuI	CTGGAG	2 cut(s)	6, 351
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	1 cut(s)	13
Hin1II	CATG	4 cut(s)	85, 227, 355, 407
HpaII	CCGG	1 cut(s)	13
Hpy188I	TCNGA	3 cut(s)	93, 123, 417
Hpy188III	TCNNGA	4 cut(s)	23, 82, 338, 368
HpyAV	CCTTC	2 cut(s)	50, 311
HpyCH4V	TGCA	5 cut(s)	29, 77, 116, 260, 286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
HpyF3I	CTNAG	1 cut(s)	311
Hsp92II	CATG	4 cut(s)	85, 227, 355, 407
Kzo9I	GATC	2 cut(s)	181, 412
LpnPI	CCDG	8 cut(s)	26, 30, 36, 57, 63, 232, 272, 381
Lsp1109I	GCAGC	1 cut(s)	174
LweI	GCATC	1 cut(s)	16
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	2 cut(s)	183, 414
MboI	GATC	2 cut(s)	181, 412
MboII	GAAGA	4 cut(s)	113, 275, 281, 383
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	2 cut(s)	19, 351
MluCI	AATT	3 cut(s)	95, 200, 232
MnlI	CCTC	4 cut(s)	30, 146, 181, 349
MseI	TTAA	2 cut(s)	243, 423
MspI	CCGG	1 cut(s)	13
MspR9I	CCNGG	2 cut(s)	14, 45
Mva1269I	GAATGC	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	196
NciI	CCSGG	1 cut(s)	14
NdeII	GATC	2 cut(s)	181, 412
NlaIII	CATG	4 cut(s)	85, 227, 355, 407
NlaIV	GGNNCC	1 cut(s)	18
PagI	TCATGA	1 cut(s)	81
PctI	GAATGC	1 cut(s)	77
PfoI	TCCNGGA	1 cut(s)	43
PkrI	GCNGC	2 cut(s)	11, 189
Psp124BI	GAGCTC	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	412
SacI	GAGCTC	1 cut(s)	351
SaqAI	TTAA	2 cut(s)	243, 423
SatI	GCNGC	2 cut(s)	10, 188
Sau3AI	GATC	2 cut(s)	181, 412
Sau96I	GGNCC	1 cut(s)	47
ScrFI	CCNGG	2 cut(s)	14, 45
SduI	GDGCHC	2 cut(s)	19, 351
SetI	ASST	6 cut(s)	22, 42, 173, 243, 322, 351
SfaNI	GCATC	1 cut(s)	16
SinI	GGWCC	1 cut(s)	47
Sse9I	AATT	3 cut(s)	95, 200, 232
SsiI	CCGC	2 cut(s)	10, 190
SstI	GAGCTC	1 cut(s)	351
StyD4I	CCNGG	2 cut(s)	12, 43
TaqI	TCGA	1 cut(s)	138
TasI	AATT	3 cut(s)	95, 200, 232
TauI	GCSGC	1 cut(s)	12
Tru1I	TTAA	2 cut(s)	243, 423
Tru9I	TTAA	2 cut(s)	243, 423
TscAI	CASTG	1 cut(s)	319
TseI	GCWGC	1 cut(s)	187
TspDTI	ATGAA	4 cut(s)	70, 282, 387, 392
TspRI	CASTG	1 cut(s)	319
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.