Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Reverse (-)

23661878 .. 23669948

Gene Structure 8071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG150800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGGTCTAGGGATTGCATATGCTGGTGATGAGAACGAGCAGATACGTAGTAAGCTGACTCCTATACTAAATGACGCCAAAGCTCCTCCCCTTGATGTTATCACATTCGCTGCAATCTCCTTGGGGTTGATATATGTTGCTGAGTTGGGGGAGCCCCTTGCTCGCCTAATACCCCTCAGCCTAGGTCTTCTGTATCTTGGGAAGCAGGAAAGTGTTGAGGCCACTGCTGAAGTTTCAAAGACATTTCATGAAAAAATCAGAAAACATTGTGATATGACTCTGCTTTCTTGTGCTTATGTGGGAACAGGAAATGTTCTCAAGGTTCAAAACCTTCTTGGCCATTGTTCACAACATCTTGAGAAGGGTGAAACACACCAGGGGCCTGCAGTGCTTGTTATTGCGATGATAGCAATGGCTGAAGAGTTGGGACTTGAAATGGCAATTCGTTCATTGGAGCATCTTCTACAGTATGGAGAACAAAATATCCGTCGGGCAGTTCCTTTGGCTCTTGGTCTCCTTTGCATATCAAATCCAAAGATAGTAGTAAGCCGACTCCTAGACTCGCTCCCTGTTGCAAATGCTCCCCAGGCTATTGCCACATTCTCAGTAGCCTCATTGAAGTTGATAAAAATATTGGTTCCTGAAAGGACGACTAATATTGGCTCCTGCAGTGATGACAAGACAAATATTGGCTCCTGCAATGACGACATTGCTCAGGCCGTGATAGTTGATGAGCTGCGAGAAGCTGTATTGCTTGTTTTTGGGTTTTGCCAACAAACAATGACAAATGCAAGGTGGTTAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

268

Amino Acids

28.95

Weight (kDa)

5.55

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	337
AcuI	CTGAAG	2 cut(s)	249, 438
AcyI	GRCGYC	1 cut(s)	75
AgsI	TTSAA	4 cut(s)	237, 326, 434, 619
AjnI	CCWGG	2 cut(s)	375, 585
AloI	GAACNNNNNNTCC	2 cut(s)	468, 500
AluBI	AGCT	4 cut(s)	55, 83, 736, 746
AluI	AGCT	4 cut(s)	55, 83, 736, 746
Alw26I	GTCTC	1 cut(s)	518
AoxI	GGCC	4 cut(s)	219, 337, 380, 717
ApeKI	GCWGC	2 cut(s)	110, 736
ArsI	GACNNNNNNTTYG	2 cut(s)	472, 504
AspA2I	CCTAGG	1 cut(s)	181
AspS9I	GGNCC	1 cut(s)	380
AsuHPI	GGTGA	2 cut(s)	38, 377
AvrII	CCTAGG	1 cut(s)	181
BalI	TGGCCA	1 cut(s)	339
BanII	GRGCYC	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	179
BbvCI	CCTCAGC	1 cut(s)	176
BbvI	GCAGC	2 cut(s)	97, 723
BceAI	ACGGC	1 cut(s)	704
BciT130I	CCWGG	2 cut(s)	377, 587
BcoDI	GTCTC	1 cut(s)	518
BfaI	CTAG	3 cut(s)	8, 182, 557
BfmI	CTRYAG	3 cut(s)	384, 464, 667
BisI	GCNGC	2 cut(s)	111, 737
BlnI	CCTAGG	1 cut(s)	181
BlsI	GCNGC	2 cut(s)	112, 738
Bme1390I	CCNGG	2 cut(s)	377, 587
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	5 cut(s)	153, 381, 639, 664, 694
BmrFI	CCNGG	2 cut(s)	377, 587
BmsI	GCATC	1 cut(s)	466
BpiI	GAAGAC	1 cut(s)	179
Bpu10I	CCTNAGC	2 cut(s)	176, 714
BpuEI	CTTGAG	2 cut(s)	302, 377
BsaAI	YACGTR	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	518
BsaJI	CCNNGG	4 cut(s)	120, 181, 376, 585
Bse3DI	GCAATG	3 cut(s)	417, 706, 708
BseBI	CCWGG	2 cut(s)	377, 587
BseDI	CCNNGG	4 cut(s)	120, 181, 376, 585
BseMI	GCAATG	3 cut(s)	417, 706, 708
BseMII	CTCAG	4 cut(s)	132, 190, 618, 728
BseRI	GAGGAG	1 cut(s)	75
BseXI	GCAGC	2 cut(s)	97, 723
BshFI	GGCC	4 cut(s)	221, 339, 382, 719
BslFI	GGGAC	1 cut(s)	441
BsmAI	GTCTC	1 cut(s)	518
BsmFI	GGGAC	1 cut(s)	441
BsnI	GGCC	4 cut(s)	221, 339, 382, 719
Bso31I	GGTCTC	1 cut(s)	518
Bsp1286I	GDGCHC	1 cut(s)	156
BspANI	GGCC	4 cut(s)	221, 339, 382, 719
BspCNI	CTCAG	4 cut(s)	133, 189, 617, 727
BspHI	TCATGA	1 cut(s)	247
BspLI	GGNNCC	5 cut(s)	153, 381, 639, 664, 694
BspMAI	CTGCAG	2 cut(s)	388, 671
BspTNI	GGTCTC	1 cut(s)	518
BsrDI	GCAATG	3 cut(s)	417, 706, 708
BssECI	CCNNGG	4 cut(s)	120, 181, 376, 585
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	2 cut(s)	120, 181
Bst2UI	CCWGG	2 cut(s)	377, 587
Bst4CI	ACNGT	1 cut(s)	468
Bst6I	CTCTTC	1 cut(s)	414
BstACI	GRCGYC	1 cut(s)	75
BstBAI	YACGTR	1 cut(s)	47
BstC8I	GCNNGC	2 cut(s)	163, 384
BstDEI	CTNAG	4 cut(s)	141, 176, 604, 714
BstMAI	GTCTC	1 cut(s)	518
BstMWI	GCNNNNNNNGC	3 cut(s)	388, 407, 587
BstNI	CCWGG	2 cut(s)	377, 587
BstSCI	CCNGG	2 cut(s)	375, 585
BstSFI	CTRYAG	3 cut(s)	384, 464, 667
BstSNI	TACGTA	1 cut(s)	47
BstV1I	GCAGC	2 cut(s)	97, 723
BstV2I	GAAGAC	1 cut(s)	179
BsuRI	GGCC	4 cut(s)	221, 339, 382, 719
BtgZI	GCGATG	1 cut(s)	416
BtsI	GCAGTG	3 cut(s)	222, 393, 676
BtsIMutI	CAGTG	3 cut(s)	222, 393, 676
Cac8I	GCNNGC	2 cut(s)	163, 384
CciI	TCATGA	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	380
CseI	GACGC	1 cut(s)	83
CviAII	CATG	1 cut(s)	248
DdeI	CTNAG	4 cut(s)	141, 176, 604, 714
EaeI	YGGCCR	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Eco105I	TACGTA	1 cut(s)	47
Eco130I	CCWWGG	2 cut(s)	120, 181
Eco24I	GRGCYC	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	518
Eco57I	CTGAAG	2 cut(s)	249, 438
EcoO109I	RGGNCCY	1 cut(s)	380
EcoRII	CCWGG	2 cut(s)	375, 585
EcoT14I	CCWWGG	2 cut(s)	120, 181
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	2 cut(s)	120, 181
FaeI	CATG	1 cut(s)	251
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	1 cut(s)	247
FauNDI	CATATG	1 cut(s)	19
Fnu4HI	GCNGC	2 cut(s)	111, 737
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	2 cut(s)	111, 737
FspBI	CTAG	3 cut(s)	8, 182, 557
GluI	GCNGC	2 cut(s)	111, 737
HaeIII	GGCC	4 cut(s)	221, 339, 382, 719
HgaI	GACGC	1 cut(s)	83
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	1 cut(s)	251
HinfI	GANTC	4 cut(s)	58, 277, 552, 560
HphI	GGTGA	2 cut(s)	38, 377
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	1 cut(s)	260
Hpy188III	TCNNGA	3 cut(s)	248, 356, 641
Hpy8I	GTNNAC	1 cut(s)	347
Hpy99I	CGWCG	1 cut(s)	492
HpyAV	CCTTC	2 cut(s)	341, 355
HpyCH4III	ACNGT	1 cut(s)	468
HpyCH4IV	ACGT	1 cut(s)	46
HpyCH4V	TGCA	8 cut(s)	17, 113, 386, 522, 575, 669, 699, 791
HpyF10VI	GCNNNNNNNGC	3 cut(s)	388, 407, 587
HpyF3I	CTNAG	4 cut(s)	141, 176, 604, 714
HpySE526I	ACGT	1 cut(s)	46
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	251
LmnI	GCTCC	7 cut(s)	88, 151, 454, 570, 586, 668, 698
Lsp1109I	GCAGC	2 cut(s)	97, 723
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	3 cut(s)	8, 182, 557
MaeII	ACGT	1 cut(s)	46
MboII	GAAGA	3 cut(s)	179, 431, 452
MhlI	GDGCHC	1 cut(s)	156
MlsI	TGGCCA	1 cut(s)	339
MluCI	AATT	1 cut(s)	441
MluNI	TGGCCA	1 cut(s)	339
MlyI	GAGTC	4 cut(s)	52, 271, 546, 554
MnlI	CCTC	4 cut(s)	96, 185, 211, 622
Mox20I	TGGCCA	1 cut(s)	339
MscI	TGGCCA	1 cut(s)	339
MseI	TTAA	1 cut(s)	800
Msp20I	TGGCCA	1 cut(s)	339
MspR9I	CCNGG	2 cut(s)	377, 587
MvaI	CCWGG	2 cut(s)	377, 587
MwoI	GCNNNNNNNGC	3 cut(s)	388, 407, 587
NdeI	CATATG	1 cut(s)	19
NlaIII	CATG	1 cut(s)	251
NlaIV	GGNNCC	5 cut(s)	153, 381, 639, 664, 694
PagI	TCATGA	1 cut(s)	247
PkrI	GCNGC	2 cut(s)	112, 738
PleI	GAGTC	4 cut(s)	52, 271, 546, 554
PpsI	GAGTC	4 cut(s)	52, 271, 546, 554
Ppu21I	YACGTR	1 cut(s)	47
Psp6I	CCWGG	2 cut(s)	375, 585
PspGI	CCWGG	2 cut(s)	375, 585
PspN4I	GGNNCC	5 cut(s)	153, 381, 639, 664, 694
PspPI	GGNCC	1 cut(s)	380
PstI	CTGCAG	2 cut(s)	388, 671
SaqAI	TTAA	1 cut(s)	800
SatI	GCNGC	2 cut(s)	111, 737
Sau96I	GGNCC	1 cut(s)	380
SchI	GAGTC	4 cut(s)	52, 271, 546, 554
ScrFI	CCNGG	2 cut(s)	377, 587
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	9 cut(s)	49, 57, 85, 187, 324, 333, 738, 748, 797
SfaNI	GCATC	1 cut(s)	466
SfcI	CTRYAG	3 cut(s)	384, 464, 667
SmlI	CTYRAG	2 cut(s)	317, 356
SmoI	CTYRAG	2 cut(s)	317, 356
SnaBI	TACGTA	1 cut(s)	47
Sse9I	AATT	1 cut(s)	441
SspI	AATATT	3 cut(s)	633, 658, 688
SspMI	CTAG	3 cut(s)	8, 182, 557
StyD4I	CCNGG	2 cut(s)	375, 585
StyI	CCWWGG	2 cut(s)	120, 181
TaaI	ACNGT	1 cut(s)	468
TaiI	ACGT	1 cut(s)	49
TasI	AATT	1 cut(s)	441
Tru1I	TTAA	1 cut(s)	800
Tru9I	TTAA	1 cut(s)	800
TscAI	CASTG	3 cut(s)	229, 393, 676
TseI	GCWGC	2 cut(s)	110, 736
TspDTI	ATGAA	3 cut(s)	236, 264, 438
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	3 cut(s)	229, 393, 676
XmaJI	CCTAGG	1 cut(s)	181
XspI	CTAG	3 cut(s)	8, 182, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.