Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Reverse (-)

43387954 .. 43395907

Gene Structure 7954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00116290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1923 bp

ATGACAAGAAGGACGAGGATTTGCAAACAATTGGAGTTGTATGTGGAGAGGGTTCAAGATCCCGATCCTGGGTTGCAGAAGGTTGCCCTTGAGAGTATGAGGAACTTAGCTGGAGAAATTGCTCAAGAATATGCCAAGCGACAGCACAATGCTGAACCGGAAGCTGTTGACCTTTTAATGGAGGTGGAAGACCTTGATCTGTTAGTTGAGCATGTTGATAAGACAAATTTTAAGAGGACTTGTCTCTACCTCACCAGTTCGGCAAGATACCTTCCTGGACCAGATGATATGTTAGTTTTGGATATTGCATTCATGATATATCTGAAATTTGAAGAGTATCCAAATGCACTTCAGATTGCTCTTTTCTTGACAATAAGGAGGTTTGTGCCTTTTTATAAATTATCTCGTTATGTAAAGCAAGTCTTTACCTCTTGTGATGATCTGCTGCGTAAAAAGCAATTCTGTTACATCCTTGCCAGACATAAGATGAAGAAAAGAGAAGCATTGCAGGATATTATCAATAACGCTAAACTCAGTGAAGGTTATCTTACCCTTGCTCGTGATATTGAGGTCATGGAGGCCAAAACTCCAGAAGATATATACAAGGCACACTTACTTGATGGCCGGGCAAGTGCTGGTGCTAGTGTTGATTCAGCCAGACAGAACTTAGCTGCTACGTTTGTTAATGCATTTGTCAATGCTGGCTTTGGTCAGGATAAGTTGATGACTGTCCCATCAGATGCCTCGAGTGGTGTTTTGTATGGAATTCTTCACGACAGGGTACAATTTTTACTGTGGGATGTTGACTCCGGGCTGGCTCAAATTGACAAGTACTTCCACAGCAATGACAACCATGTTATTGCTGGTGCGTTGTTAGGGGTTGGGATTGTCAATTGCAGTATAAAAAATGATTGTGATCCAATACGTAGTAAGCTGACTCCTATACTAAATGATGCCAAAGCTCCCCTTGATGTTATCACATTCGCTGCAATCTCCTTGGGGTTGATATATGTTGGTTCTTGCAATGAGGAGGTGGCTCAGGCAATTATATTTGCACTAATGGACCGAAGTGATGCTGAGTTGGGGGAGCCCCTTGCTCGCCTAATACCCCTCAGCTTAGGTCTTCTGTACCTTGGGAAGCAGGGCCCTGCTGTGCTTGGTATTGCGATGATAGCAATGGCTGAAGAGTTGGGACTTGAAATGGCAATTCGTTCATTGGAGCATCTTCTACAGTATGGAGAACAAAATATCCGTCGGGCAGTTCCTTTGGCTCTTGGTCTCCTTTGCATATCAAATCCAAAGGTCACCGTTATGGACACATTAAGCAGACTTAGCCATGATACGGATTCAGAAGTAGCAATGGCGGCAGTAATTTCCTTAGGTGTGATAGGGGCAGGAACCAACAATGCCAGAATAGCTGCCATGCTTCGCAATCTCTCAAGTTATTACTACAAGGATGCCAGCCTACTCTTCTGTGTGCGAATTGCTCAAGGTCTTGTTCATTTAGGAAAGGGTTTATTGACTCTAAATCCATATCATTCTGATCGCTTCTTGTTATCACCGGCAGCACTTGGTGGAATCATAACCATGCTGCATGCATGTCTTGATATGAAAGCCATCATTTTGGGGAAGTATCATTATGTTCTCTACTTTCTGATATTGGCAATGCAGCCGAGAATGTTGCTAACTGTAGATGAGAATCTAAAGCCGTTGTCTGTCCCTGTTCGGGTCGGCCAAGCTGTGGATGTTGTTGGCCAGGCTGGTCGTCCCAAAACAATTACTGGCTTTCAGACCCACTCAACACCAGTTCTTTTGGCTGCCGGCGATAGAGCTGAGCTAGCGACTGAGAAGTATATTCCCCTTTCCCCAATCCTTGAAGGGTTTGTGATTTTGAAAGAAAATCCAGAGTATCGGGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

640

Amino Acids

70.81

Weight (kDa)

6.01

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN1_RPN2_N	PF17781	48 - 205	3.8e-49	RPN1 N-terminal domain
RPN1_C	PF18051	584 - 637	2.9e-31	26S proteasome non-ATPase regulatory subunit RPN1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
AccB7I	CCANNNNNTGG	1 cut(s)	1741
AciI	CCGC	1 cut(s)	1364
AclWI	GGATC	3 cut(s)	53, 59, 911
AcoI	YGGCCR	3 cut(s)	622, 1732, 1753
AcsI	RAATTY	3 cut(s)	226, 326, 765
AcuI	CTGAAG	2 cut(s)	335, 1203
AdeI	CACNNNGTG	1 cut(s)	1574
AfaI	GTAC	3 cut(s)	783, 833, 1130
AfiI	CCNNNNNNNGG	6 cut(s)	68, 69, 178, 1342, 1726, 1741
AgsI	TTSAA	5 cut(s)	56, 332, 1199, 1877, 1894
AjnI	CCWGG	3 cut(s)	67, 274, 1755
AloI	GAACNNNNNNTCC	2 cut(s)	1233, 1265
Alw26I	GTCTC	2 cut(s)	248, 1283
AlwI	GGATC	3 cut(s)	53, 59, 911
Ama87I	CYCGRG	1 cut(s)	745
AoxI	GGCC	5 cut(s)	579, 622, 1144, 1732, 1753
ApaI	GGGCCC	1 cut(s)	1148
ApeKI	GCWGC	8 cut(s)	445, 671, 986, 1418, 1565, 1591, 1669, 1817
ApoI	RAATTY	3 cut(s)	226, 326, 765
ArsI	GACNNNNNNTTYG	2 cut(s)	1237, 1269
AspS9I	GGNCC	4 cut(s)	278, 1063, 1144, 1145
AsuC2I	CCSGG	2 cut(s)	626, 811
AsuHPI	GGTGA	3 cut(s)	244, 1297, 1551
AsuNHI	GCTAGC	1 cut(s)	1837
AvaI	CYCGRG	1 cut(s)	745
AvaII	GGWCC	2 cut(s)	278, 1063
AxyI	CCTNAGG	1 cut(s)	1378
BaeGI	GKGCMC	1 cut(s)	1148
BalI	TGGCCA	1 cut(s)	1755
BanII	GRGCYC	2 cut(s)	1092, 1148
BauI	CACGAG	1 cut(s)	558
BbsI	GAAGAC	2 cut(s)	195, 1115
BbvCI	CCTCAGC	1 cut(s)	1112
BbvI	GCAGC	8 cut(s)	432, 658, 973, 1405, 1577, 1578, 1681, 1804
BccI	CCATC	3 cut(s)	614, 742, 1625
BceAI	ACGGC	1 cut(s)	1693
BcgI	CGANNNNNNTGC	2 cut(s)	1663, 1697
BciT130I	CCWGG	3 cut(s)	69, 276, 1757
BciVI	GTATCC	1 cut(s)	348
BcnI	CCSGG	2 cut(s)	626, 811
BcoDI	GTCTC	2 cut(s)	248, 1283
BfaI	CTAG	2 cut(s)	642, 1838
BfmI	CTRYAG	2 cut(s)	1229, 1689
BfuI	GTATCC	1 cut(s)	348
BisI	GCNGC	9 cut(s)	446, 672, 987, 1365, 1419, 1566, 1592, 1670, 1818
BlpI	GCTNAGC	1 cut(s)	1833
BlsI	GCNGC	9 cut(s)	447, 673, 988, 1366, 1420, 1567, 1593, 1671, 1819
BmcAI	AGTACT	1 cut(s)	833
Bme1390I	CCNGG	5 cut(s)	69, 276, 626, 811, 1757
Bme18I	GGWCC	2 cut(s)	278, 1063
BmeT110I	CYCGRG	1 cut(s)	745
BmgT120I	GGNCC	4 cut(s)	278, 1063, 1144, 1145
BmiI	GGNNCC	3 cut(s)	1089, 1146, 1399
BmrFI	CCNGG	5 cut(s)	69, 276, 626, 811, 1757
BmsI	GCATC	5 cut(s)	730, 943, 1063, 1231, 1447
BmtI	GCTAGC	1 cut(s)	1841
BpiI	GAAGAC	2 cut(s)	195, 1115
BpmI	CTGGAG	2 cut(s)	132, 573
Bpu10I	CCTNAGC	3 cut(s)	1038, 1112, 1117
Bpu1102I	GCTNAGC	1 cut(s)	1833
BpuEI	CTTGAG	4 cut(s)	108, 110, 1423, 1473
BpuMI	CCSGG	2 cut(s)	626, 811
BsaAI	YACGTR	1 cut(s)	926
BsaBI	GATNNNNATC	3 cut(s)	63, 915, 1698
BsaI	GGTCTC	1 cut(s)	1283
BsaJI	CCNNGG	3 cut(s)	68, 996, 1132
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	6 cut(s)	68, 69, 178, 1342, 1726, 1741
Bse118I	RCCGGY	2 cut(s)	1561, 1820
Bse1I	ACTGG	3 cut(s)	255, 1786, 1805
Bse21I	CCTNAGG	1 cut(s)	1378
Bse3DI	GCAATG	6 cut(s)	503, 850, 1030, 1182, 1365, 1671
Bse8I	GATNNNNATC	3 cut(s)	63, 915, 1698
BseBI	CCWGG	3 cut(s)	69, 276, 1757
BseDI	CCNNGG	3 cut(s)	68, 996, 1132
BseGI	GGATG	4 cut(s)	468, 805, 1462, 1750
BseJI	GATNNNNATC	3 cut(s)	63, 915, 1698
BseLI	CCNNNNNNNGG	6 cut(s)	68, 69, 178, 1342, 1726, 1741
BseMI	GCAATG	6 cut(s)	503, 850, 1030, 1182, 1365, 1671
BseMII	CTCAG	6 cut(s)	547, 1052, 1068, 1126, 1824, 1836
BseNI	ACTGG	3 cut(s)	255, 1786, 1805
BseRI	GAGGAG	1 cut(s)	1043
BseSI	GKGCMC	1 cut(s)	1148
BseXI	GCAGC	8 cut(s)	432, 658, 973, 1405, 1577, 1578, 1681, 1804
BshFI	GGCC	5 cut(s)	581, 624, 1146, 1734, 1755
BsiHKCI	CYCGRG	1 cut(s)	745
BsiSI	CCGG	5 cut(s)	158, 625, 810, 1562, 1821
BslFI	GGGAC	4 cut(s)	716, 1206, 1703, 1752
BslI	CCNNNNNNNGG	6 cut(s)	68, 69, 178, 1342, 1726, 1741
BsmAI	GTCTC	2 cut(s)	248, 1283
BsmFI	GGGAC	4 cut(s)	716, 1206, 1703, 1752
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	5 cut(s)	581, 624, 1146, 1734, 1755
Bso31I	GGTCTC	1 cut(s)	1283
BsoBI	CYCGRG	1 cut(s)	745
Bsp120I	GGGCCC	1 cut(s)	1144
Bsp1286I	GDGCHC	2 cut(s)	1092, 1148
Bsp143I	GATC	6 cut(s)	58, 64, 196, 439, 916, 1543
Bsp1720I	GCTNAGC	1 cut(s)	1833
BspACI	CCGC	1 cut(s)	1364
BspANI	GGCC	5 cut(s)	581, 624, 1146, 1734, 1755
BspCNI	CTCAG	6 cut(s)	546, 1051, 1069, 1125, 1825, 1837
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	3 cut(s)	1089, 1146, 1399
BspOI	GCTAGC	1 cut(s)	1841
BspPI	GGATC	3 cut(s)	53, 59, 911
BspTNI	GGTCTC	1 cut(s)	1283
BsrDI	GCAATG	6 cut(s)	503, 850, 1030, 1182, 1365, 1671
BsrFI	RCCGGY	2 cut(s)	1561, 1820
BsrI	ACTGG	3 cut(s)	255, 1786, 1805
BssAI	RCCGGY	2 cut(s)	1561, 1820
BssECI	CCNNGG	3 cut(s)	68, 996, 1132
BssMI	GATC	6 cut(s)	58, 64, 196, 439, 916, 1543
BssSI	CACGAG	1 cut(s)	558
BssT1I	CCWWGG	2 cut(s)	996, 1132
Bst2BI	CACGAG	1 cut(s)	558
Bst2UI	CCWGG	3 cut(s)	69, 276, 1757
Bst4CI	ACNGT	5 cut(s)	730, 795, 1233, 1309, 1690
Bst6I	CTCTTC	4 cut(s)	327, 1179, 1475, 1911
BstBAI	YACGTR	1 cut(s)	926
BstC8I	GCNNGC	7 cut(s)	703, 816, 1099, 1462, 1596, 1822, 1839
BstEII	GGTNACC	1 cut(s)	1303
BstF5I	GGATG	4 cut(s)	468, 805, 1462, 1750
BstKTI	GATC	6 cut(s)	61, 67, 199, 442, 919, 1546
BstMAI	GTCTC	2 cut(s)	248, 1283
BstMBI	GATC	6 cut(s)	58, 64, 196, 439, 916, 1543
BstMWI	GCNNNNNNNGC	6 cut(s)	454, 1172, 1332, 1364, 1415, 1838
BstNI	CCWGG	3 cut(s)	69, 276, 1757
BstNSI	RCATGY	3 cut(s)	215, 1598, 1602
BstPI	GGTNACC	1 cut(s)	1303
BstSCI	CCNGG	5 cut(s)	67, 274, 624, 809, 1755
BstSFI	CTRYAG	2 cut(s)	1229, 1689
BstSLI	GKGCMC	1 cut(s)	1148
BstSNI	TACGTA	1 cut(s)	926
BstV1I	GCAGC	8 cut(s)	432, 658, 973, 1405, 1577, 1578, 1681, 1804
BstV2I	GAAGAC	2 cut(s)	195, 1115
BstX2I	RGATCY	1 cut(s)	58
BstXI	CCANNNNNNTGG	1 cut(s)	1624
BstYI	RGATCY	1 cut(s)	58
Bsu36I	CCTNAGG	1 cut(s)	1378
BsuI	GTATCC	1 cut(s)	348
BsuRI	GGCC	5 cut(s)	581, 624, 1146, 1734, 1755
BtgZI	GCGATG	1 cut(s)	1181
BtsCI	GGATG	4 cut(s)	468, 805, 1462, 1750
BtsIMutI	CAGTG	1 cut(s)	541
Cac8I	GCNNGC	7 cut(s)	703, 816, 1099, 1462, 1596, 1822, 1839
CciI	TCATGA	1 cut(s)	312
Cfr10I	RCCGGY	2 cut(s)	1561, 1820
Cfr13I	GGNCC	4 cut(s)	278, 1063, 1144, 1145
Csp6I	GTAC	3 cut(s)	782, 832, 1129
CviAII	CATG	9 cut(s)	212, 313, 574, 854, 1337, 1423, 1588, 1595, 1599
CviQI	GTAC	3 cut(s)	782, 832, 1129
DpnI	GATC	6 cut(s)	60, 66, 198, 441, 918, 1545
DpnII	GATC	6 cut(s)	58, 64, 196, 439, 916, 1543
DraIII	CACNNNGTG	1 cut(s)	1574
EaeI	YGGCCR	3 cut(s)	622, 1732, 1753
Eam1104I	CTCTTC	4 cut(s)	327, 1179, 1475, 1911
EarI	CTCTTC	4 cut(s)	327, 1179, 1475, 1911
Eco105I	TACGTA	1 cut(s)	926
Eco130I	CCWWGG	2 cut(s)	996, 1132
Eco24I	GRGCYC	2 cut(s)	1092, 1148
Eco31I	GGTCTC	1 cut(s)	1283
Eco47I	GGWCC	2 cut(s)	278, 1063
Eco57I	CTGAAG	2 cut(s)	335, 1203
Eco81I	CCTNAGG	1 cut(s)	1378
Eco88I	CYCGRG	1 cut(s)	745
Eco91I	GGTNACC	1 cut(s)	1303
EcoO109I	RGGNCCY	2 cut(s)	1144, 1145
EcoO65I	GGTNACC	1 cut(s)	1303
EcoRI	GAATTC	1 cut(s)	765
EcoRII	CCWGG	3 cut(s)	67, 274, 1755
EcoT14I	CCWWGG	2 cut(s)	996, 1132
EcoT22I	ATGCAT	2 cut(s)	691, 1600
EcoT38I	GRGCYC	2 cut(s)	1092, 1148
ErhI	CCWWGG	2 cut(s)	996, 1132
FaeI	CATG	9 cut(s)	215, 316, 577, 857, 1340, 1426, 1591, 1598, 1602
FalI	AAGNNNNNCTT	8 cut(s)	407, 439, 531, 563, 596, 628, 951, 983
FaqI	GGGAC	4 cut(s)	716, 1206, 1703, 1752
FatI	CATG	9 cut(s)	211, 312, 573, 853, 1336, 1422, 1587, 1594, 1598
Fnu4HI	GCNGC	9 cut(s)	446, 672, 987, 1365, 1419, 1566, 1592, 1670, 1818
FokI	GGATG	4 cut(s)	455, 812, 1469, 1757
FriOI	GRGCYC	2 cut(s)	1092, 1148
Fsp4HI	GCNGC	9 cut(s)	446, 672, 987, 1365, 1419, 1566, 1592, 1670, 1818
FspBI	CTAG	2 cut(s)	642, 1838
GluI	GCNGC	9 cut(s)	446, 672, 987, 1365, 1419, 1566, 1592, 1670, 1818
GsuI	CTGGAG	2 cut(s)	132, 573
HaeIII	GGCC	5 cut(s)	581, 624, 1146, 1734, 1755
HapII	CCGG	5 cut(s)	158, 625, 810, 1562, 1821
Hin1II	CATG	9 cut(s)	215, 316, 577, 857, 1340, 1426, 1591, 1598, 1602
HincII	GTYRAC	2 cut(s)	169, 805
HindII	GTYRAC	2 cut(s)	169, 805
HinfI	GANTC	7 cut(s)	650, 806, 937, 1346, 1522, 1578, 1699
HpaII	CCGG	5 cut(s)	158, 625, 810, 1562, 1821
HphI	GGTGA	3 cut(s)	244, 1297, 1551
Hpy166II	GTNNAC	2 cut(s)	169, 805
Hpy188I	TCNGA	7 cut(s)	324, 354, 739, 1351, 1543, 1656, 1791
Hpy8I	GTNNAC	2 cut(s)	169, 805
Hpy99I	CGWCG	1 cut(s)	1257
HpyAV	CCTTC	5 cut(s)	3, 73, 281, 533, 1871
HpyCH4III	ACNGT	5 cut(s)	730, 795, 1233, 1309, 1690
HpyCH4IV	ACGT	2 cut(s)	677, 925
HpyF10VI	GCNNNNNNNGC	6 cut(s)	454, 1172, 1332, 1364, 1415, 1838
HpySE526I	ACGT	2 cut(s)	677, 925
Hsp92II	CATG	9 cut(s)	215, 316, 577, 857, 1340, 1426, 1591, 1598, 1602
KroI	GCCGGC	1 cut(s)	1820
KroNI	GCCGGC	1 cut(s)	1822
Kzo9I	GATC	6 cut(s)	58, 64, 196, 439, 916, 1543
LmnI	GCTCC	3 cut(s)	967, 1087, 1219
Lsp1109I	GCAGC	8 cut(s)	432, 658, 973, 1405, 1577, 1578, 1681, 1804
LweI	GCATC	5 cut(s)	730, 943, 1063, 1231, 1447
MaeI	CTAG	2 cut(s)	642, 1838
MaeII	ACGT	2 cut(s)	677, 925
MaeIII	GTNAC	2 cut(s)	464, 1303
MalI	GATC	6 cut(s)	60, 66, 198, 441, 918, 1545
MboI	GATC	6 cut(s)	58, 64, 196, 439, 916, 1543
MboII	GAAGA	9 cut(s)	200, 344, 502, 605, 761, 1115, 1196, 1217, 1462
MfeI	CAATTG	2 cut(s)	29, 892
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	2 cut(s)	1092, 1148
MlsI	TGGCCA	1 cut(s)	1755
MluNI	TGGCCA	1 cut(s)	1755
MlyI	GAGTC	3 cut(s)	800, 931, 1516
Mox20I	TGGCCA	1 cut(s)	1755
Mph1103I	ATGCAT	2 cut(s)	691, 1600
MroNI	GCCGGC	1 cut(s)	1820
MscI	TGGCCA	1 cut(s)	1755
MseI	TTAA	4 cut(s)	176, 231, 684, 1322
MslI	CAYNNNNRTG	3 cut(s)	843, 1310, 1586
Msp20I	TGGCCA	1 cut(s)	1755
MspI	CCGG	5 cut(s)	158, 625, 810, 1562, 1821
MspR9I	CCNGG	5 cut(s)	69, 276, 626, 811, 1757
MunI	CAATTG	2 cut(s)	29, 892
Mva1269I	GAATGC	1 cut(s)	308
MvaI	CCWGG	3 cut(s)	69, 276, 1757
MwoI	GCNNNNNNNGC	6 cut(s)	454, 1172, 1332, 1364, 1415, 1838
NaeI	GCCGGC	1 cut(s)	1822
NciI	CCSGG	2 cut(s)	626, 811
NdeII	GATC	6 cut(s)	58, 64, 196, 439, 916, 1543
NgoMIV	GCCGGC	1 cut(s)	1820
NheI	GCTAGC	1 cut(s)	1837
NlaIII	CATG	9 cut(s)	215, 316, 577, 857, 1340, 1426, 1591, 1598, 1602
NlaIV	GGNNCC	3 cut(s)	1089, 1146, 1399
NmeAIII	GCCGAG	1 cut(s)	1698
NmuCI	GTSAC	1 cut(s)	1303
NsiI	ATGCAT	2 cut(s)	691, 1600
NspI	RCATGY	3 cut(s)	215, 1598, 1602
PaeI	GCATGC	1 cut(s)	1598
PaeR7I	CTCGAG	1 cut(s)	745
PagI	TCATGA	1 cut(s)	312
PctI	GAATGC	1 cut(s)	308
PdiI	GCCGGC	1 cut(s)	1822
PfeI	GAWTC	4 cut(s)	650, 1346, 1578, 1699
PflMI	CCANNNNNTGG	1 cut(s)	1741
PfoI	TCCNGGA	1 cut(s)	274
PkrI	GCNGC	9 cut(s)	447, 673, 988, 1366, 1420, 1567, 1593, 1671, 1819
PleI	GAGTC	3 cut(s)	800, 931, 1516
PpsI	GAGTC	3 cut(s)	800, 931, 1516
Ppu21I	YACGTR	1 cut(s)	926
PsiI	TTATAA	1 cut(s)	396
Psp6I	CCWGG	3 cut(s)	67, 274, 1755
PspEI	GGTNACC	1 cut(s)	1303
PspGI	CCWGG	3 cut(s)	67, 274, 1755
PspN4I	GGNNCC	3 cut(s)	1089, 1146, 1399
PspOMI	GGGCCC	1 cut(s)	1144
PspPI	GGNCC	4 cut(s)	278, 1063, 1144, 1145
PspXI	VCTCGAGB	1 cut(s)	745
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	3 cut(s)	783, 833, 1130
RsaNI	GTAC	3 cut(s)	782, 832, 1129
RseI	CAYNNNNRTG	3 cut(s)	843, 1310, 1586
SaqAI	TTAA	4 cut(s)	176, 231, 684, 1322
SatI	GCNGC	9 cut(s)	446, 672, 987, 1365, 1419, 1566, 1592, 1670, 1818
Sau3AI	GATC	6 cut(s)	58, 64, 196, 439, 916, 1543
Sau96I	GGNCC	4 cut(s)	278, 1063, 1144, 1145
ScaI	AGTACT	1 cut(s)	833
SchI	GAGTC	3 cut(s)	800, 931, 1516
ScrFI	CCNGG	5 cut(s)	69, 276, 626, 811, 1757
SduI	GDGCHC	2 cut(s)	1092, 1148
SfaNI	GCATC	5 cut(s)	730, 943, 1063, 1231, 1447
SfcI	CTRYAG	2 cut(s)	1229, 1689
Sfr274I	CTCGAG	1 cut(s)	745
SinI	GGWCC	2 cut(s)	278, 1063
SlaI	CTCGAG	1 cut(s)	745
SmiMI	CAYNNNNRTG	3 cut(s)	843, 1310, 1586
SmlI	CTYRAG	5 cut(s)	89, 123, 745, 1438, 1488
SmoI	CTYRAG	5 cut(s)	89, 123, 745, 1438, 1488
SnaBI	TACGTA	1 cut(s)	926
SphI	GCATGC	1 cut(s)	1598
SsiI	CCGC	1 cut(s)	1364
SspMI	CTAG	2 cut(s)	642, 1838
StyD4I	CCNGG	5 cut(s)	67, 274, 624, 809, 1755
StyI	CCWWGG	2 cut(s)	996, 1132
TaaI	ACNGT	5 cut(s)	730, 795, 1233, 1309, 1690
TaiI	ACGT	2 cut(s)	680, 928
TaqI	TCGA	1 cut(s)	746
TaqII	GACCGA	1 cut(s)	1080
TatI	WGTACW	1 cut(s)	831
TauI	GCSGC	1 cut(s)	1367
TfiI	GAWTC	4 cut(s)	650, 1346, 1578, 1699
Tru1I	TTAA	4 cut(s)	176, 231, 684, 1322
Tru9I	TTAA	4 cut(s)	176, 231, 684, 1322
TscAI	CASTG	1 cut(s)	541
TseFI	GTSAC	1 cut(s)	1303
TseI	GCWGC	8 cut(s)	445, 671, 986, 1418, 1565, 1591, 1669, 1817
Tsp45I	GTSAC	1 cut(s)	1303
TspDTI	ATGAA	5 cut(s)	301, 503, 1203, 1490, 1625
TspGWI	ACGGA	2 cut(s)	1241, 1358
TspRI	CASTG	1 cut(s)	541
Van91I	CCANNNNNTGG	1 cut(s)	1741
VpaK11BI	GGWCC	2 cut(s)	278, 1063
XapI	RAATTY	3 cut(s)	226, 326, 765
XceI	RCATGY	3 cut(s)	215, 1598, 1602
XcmI	CCANNNNNNNNNTGG	1 cut(s)	860
XhoI	CTCGAG	1 cut(s)	745
XspI	CTAG	2 cut(s)	642, 1838
ZrmI	AGTACT	1 cut(s)	833
Zsp2I	ATGCAT	2 cut(s)	691, 1600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.