Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Reverse (-)

6029466 .. 6031441

Gene Structure 1976 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05781.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGATATGCATTTTGTGGAACTTAGCTGGAGAAATTGCTCAAGAATATGCCAAGCGACAGTTGCAGAGTGATGAGACCCCGTTTGATGATTTAATGGAGTTAGTACAACAAATAGTTGCTTTTCACATGAGGCACAATGCCGAACCGGAAGCTGTTGACCTTGTAATGGAGGTTGAAGACCTTGATCTGTTAGTCGAGCATGTTGACAAGACAAATTTTAAGAGTACTTGTCTCTACCTCATCAGTTTGGTAAGATTGGTTCCTGGACCAGATGATATGTTAGTTTTGGATATTGCATTCATGATAAATCTGAAATTTGAAGAATATCCAAATGCACTTCTGATTGCCCTTTTCCTTGACAATAAGGAGTATGTAAAGCAAGTCTTTACATCTTGTGATGATCTGCTGCGTAAAAAGCAATTCTGTTACATCCTCGCCCAACATGGTAGTAATTTTGAGCTTAATGATGAGATGGTGTCAGAAGATGAAGAAAGAGAAGCAATGCAGGACATTATTAATAACGCTAAACTCAGTGAAGGTTATCTTACCCTTGCTCGTGATATTGAGGTCATGGAGGTCAAAACTCCAGAAAATATCTACAAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

203

Amino Acids

23.48

Weight (kDa)

4.35

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN1_RPN2_N	PF17781	7 - 201	2.5e-63	RPN1 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	214, 314
AfaI	GTAC	2 cut(s)	105, 226
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	2 cut(s)	176, 320
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	3 cut(s)	26, 152, 460
AluI	AGCT	3 cut(s)	26, 152, 460
Alw26I	GTCTC	2 cut(s)	68, 236
ApeKI	GCWGC	1 cut(s)	406
ApoI	RAATTY	2 cut(s)	214, 314
AseI	ATTAAT	1 cut(s)	516
AspS9I	GGNCC	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	266
BauI	CACGAG	1 cut(s)	555
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	393
BccI	CCATC	1 cut(s)	466
BciT130I	CCWGG	1 cut(s)	264
BcoDI	GTCTC	2 cut(s)	68, 236
BisI	GCNGC	1 cut(s)	407
BlsI	GCNGC	1 cut(s)	408
BmcAI	AGTACT	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	264
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	264
BpiI	GAAGAC	1 cut(s)	183
BpmI	CTGGAG	2 cut(s)	48, 570
BpuEI	CTTGAG	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	1 cut(s)	544
BseXI	GCAGC	1 cut(s)	393
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	2 cut(s)	68, 236
BsmI	GAATGC	1 cut(s)	296
Bso31I	GGTCTC	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	184, 400
BspCNI	CTCAG	1 cut(s)	543
BspHI	TCATGA	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	261
BspTNI	GGTCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	507
BssMI	GATC	2 cut(s)	184, 400
BssSI	CACGAG	1 cut(s)	555
Bst2BI	CACGAG	1 cut(s)	555
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	60
BstDEI	CTNAG	2 cut(s)	22, 530
BstF5I	GGATG	1 cut(s)	429
BstKTI	GATC	2 cut(s)	187, 403
BstMAI	GTCTC	2 cut(s)	68, 236
BstMBI	GATC	2 cut(s)	184, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 415
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	262
BstV1I	GCAGC	1 cut(s)	393
BstV2I	GAAGAC	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	429
BtsIMutI	CAGTG	1 cut(s)	538
CciI	TCATGA	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	104, 225
CviAII	CATG	5 cut(s)	127, 200, 301, 443, 571
CviJI	RGCY	3 cut(s)	26, 152, 460
CviKI_1	RGCY	3 cut(s)	26, 152, 460
CviQI	GTAC	2 cut(s)	104, 225
DdeI	CTNAG	2 cut(s)	22, 530
DpnI	GATC	2 cut(s)	186, 402
DpnII	GATC	2 cut(s)	184, 400
Eco31I	GGTCTC	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	262
EcoT22I	ATGCAT	1 cut(s)	11
FaeI	CATG	5 cut(s)	130, 203, 304, 446, 574
FaiI	YATR	9 cut(s)	7, 48, 128, 201, 278, 302, 372, 444, 572
FalI	AAGNNNNNCTT	4 cut(s)	368, 400, 528, 560
FatI	CATG	5 cut(s)	126, 199, 300, 442, 570
Fnu4HI	GCNGC	1 cut(s)	407
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	1 cut(s)	407
GluI	GCNGC	1 cut(s)	407
GsuI	CTGGAG	2 cut(s)	48, 570
HapII	CCGG	1 cut(s)	146
Hin1II	CATG	5 cut(s)	130, 203, 304, 446, 574
HincII	GTYRAC	2 cut(s)	157, 205
HindII	GTYRAC	2 cut(s)	157, 205
HpaII	CCGG	1 cut(s)	146
Hpy166II	GTNNAC	2 cut(s)	157, 205
Hpy188I	TCNGA	3 cut(s)	312, 342, 481
Hpy188III	TCNNGA	4 cut(s)	41, 301, 557, 587
Hpy8I	GTNNAC	2 cut(s)	157, 205
HpyAV	CCTTC	1 cut(s)	530
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4V	TGCA	5 cut(s)	9, 64, 296, 335, 505
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 415
HpyF3I	CTNAG	2 cut(s)	22, 530
Hsp92II	CATG	5 cut(s)	130, 203, 304, 446, 574
Kzo9I	GATC	2 cut(s)	184, 400
LpnPI	CCDG	7 cut(s)	12, 159, 249, 276, 282, 491, 600
Lsp1109I	GCAGC	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	2 cut(s)	186, 402
MboI	GATC	2 cut(s)	184, 400
MboII	GAAGA	4 cut(s)	188, 332, 494, 500
MluCI	AATT	5 cut(s)	33, 214, 314, 419, 451
MnlI	CCTC	6 cut(s)	123, 163, 248, 443, 559, 568
Mph1103I	ATGCAT	1 cut(s)	11
MseI	TTAA	4 cut(s)	92, 219, 462, 516
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	264
Mva1269I	GAATGC	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	61, 415
NdeII	GATC	2 cut(s)	184, 400
NlaIII	CATG	5 cut(s)	130, 203, 304, 446, 574
NlaIV	GGNNCC	1 cut(s)	261
NsiI	ATGCAT	1 cut(s)	11
NspI	RCATGY	1 cut(s)	203
PagI	TCATGA	1 cut(s)	300
PctI	GAATGC	1 cut(s)	296
PfoI	TCCNGGA	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	408
PshBI	ATTAAT	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	266
PsrI	GAACNNNNNNTAC	2 cut(s)	243, 275
RsaI	GTAC	2 cut(s)	105, 226
RsaNI	GTAC	2 cut(s)	104, 225
SaqAI	TTAA	4 cut(s)	92, 219, 462, 516
SatI	GCNGC	1 cut(s)	407
Sau3AI	GATC	2 cut(s)	184, 400
Sau96I	GGNCC	1 cut(s)	266
ScaI	AGTACT	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	264
SinI	GGWCC	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	5 cut(s)	33, 214, 314, 419, 451
StyD4I	CCNGG	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	60
TaqI	TCGA	1 cut(s)	195
TasI	AATT	5 cut(s)	33, 214, 314, 419, 451
TatI	WGTACW	2 cut(s)	103, 224
Tru1I	TTAA	4 cut(s)	92, 219, 462, 516
Tru9I	TTAA	4 cut(s)	92, 219, 462, 516
TscAI	CASTG	1 cut(s)	538
TseI	GCWGC	1 cut(s)	406
TspDTI	ATGAA	2 cut(s)	289, 501
TspRI	CASTG	1 cut(s)	538
VpaK11BI	GGWCC	1 cut(s)	266
VspI	ATTAAT	1 cut(s)	516
XapI	RAATTY	2 cut(s)	214, 314
XceI	RCATGY	1 cut(s)	203
ZrmI	AGTACT	1 cut(s)	226
Zsp2I	ATGCAT	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.