Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Reverse (-)

10720214 .. 10721298

Gene Structure 1085 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g12221.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTCCAATGCCAGATTGGTTCCTGGACCAGATGATATGTTAGTTTTGGATATCGCATTCATGATAAATCTGAAATTTGAAGAATATCCAAATGCACTTCTGATTGCCCTTTTCCTTGACAATAAGGAGTTTGTAAAGCAAGTCTTTACATCTTGTGATGATCTGCTGCGTAAAAAGCAATTCTGTCACATCCTTGCCCGACATGGTAGCAATTTTGAGCTTAATGATGAGATGGTGTCAGAAGATGAAGAAAGAGAAGCAATGCAGGACATTATCAATAACGCTAAACTCAGTGAAGGTAATCTTACCCTTGCTAGTGATATTGAGGTCATGGAGGCCAAACCTCCAGAAGATATCTACAAGGTTTTGAACGTTTCATTTCATTTCATGCATATTTCAAAATTTTCTGTTGTGATGATATACCATCATAAGATTTTAAGGATTACTGCATTTAATGTGCAAAAAGCTATGCTGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

160

Amino Acids

18.36

Weight (kDa)

5.18

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN1_RPN2_N	PF17781	2 - 122	1.4e-30	RPN1 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	372
AcsI	RAATTY	2 cut(s)	74, 401
AgsI	TTSAA	3 cut(s)	80, 370, 399
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	2 cut(s)	220, 467
AluI	AGCT	2 cut(s)	220, 467
AoxI	GGCC	1 cut(s)	336
ApeKI	GCWGC	2 cut(s)	166, 472
ApoI	RAATTY	2 cut(s)	74, 401
AspS9I	GGNCC	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	26
BbvI	GCAGC	2 cut(s)	153, 459
BccI	CCATC	2 cut(s)	226, 432
BciT130I	CCWGG	1 cut(s)	24
BfaI	CTAG	1 cut(s)	315
BisI	GCNGC	2 cut(s)	167, 473
BlsI	GCNGC	2 cut(s)	168, 474
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	330
Bse3DI	GCAATG	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	189
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	304
BseXI	GCAGC	2 cut(s)	153, 459
BshFI	GGCC	1 cut(s)	338
BsmI	GAATGC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	338
Bsp143I	GATC	1 cut(s)	160
BspANI	GGCC	1 cut(s)	338
BspCNI	CTCAG	1 cut(s)	303
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	21
BsrDI	GCAATG	1 cut(s)	267
BssMI	GATC	1 cut(s)	160
Bst2UI	CCWGG	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	290
BstF5I	GGATG	1 cut(s)	189
BstKTI	GATC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	153, 459
BsuRI	GGCC	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	298
CciI	TCATGA	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	26
CviAII	CATG	4 cut(s)	61, 203, 331, 388
CviJI	RGCY	3 cut(s)	220, 338, 467
CviKI_1	RGCY	3 cut(s)	220, 338, 467
DdeI	CTNAG	1 cut(s)	290
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Eco32I	GATATC	2 cut(s)	52, 355
Eco47I	GGWCC	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	22
EcoRV	GATATC	2 cut(s)	52, 355
EcoT22I	ATGCAT	1 cut(s)	393
FaeI	CATG	4 cut(s)	64, 206, 334, 391
FaiI	YATR	9 cut(s)	38, 62, 204, 332, 389, 393, 421, 429, 470
FalI	AAGNNNNNCTT	4 cut(s)	128, 160, 288, 320
FatI	CATG	4 cut(s)	60, 202, 330, 387
Fnu4HI	GCNGC	2 cut(s)	167, 473
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	2 cut(s)	167, 473
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	2 cut(s)	167, 473
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	338
Hin1II	CATG	4 cut(s)	64, 206, 334, 391
Hpy188I	TCNGA	4 cut(s)	72, 102, 241, 479
Hpy188III	TCNNGA	2 cut(s)	61, 347
HpyAV	CCTTC	1 cut(s)	290
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	5 cut(s)	95, 265, 391, 449, 460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpyF3I	CTNAG	1 cut(s)	290
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	4 cut(s)	64, 206, 334, 391
Kzo9I	GATC	1 cut(s)	160
LpnPI	CCDG	6 cut(s)	9, 25, 36, 42, 251, 360
Lsp1109I	GCAGC	2 cut(s)	153, 459
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	4 cut(s)	92, 254, 260, 362
MluCI	AATT	4 cut(s)	74, 179, 211, 401
MnlI	CCTC	3 cut(s)	319, 328, 354
Mph1103I	ATGCAT	1 cut(s)	393
MseI	TTAA	3 cut(s)	222, 437, 453
MspR9I	CCNGG	1 cut(s)	24
Mva1269I	GAATGC	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	175
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	4 cut(s)	64, 206, 334, 391
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	185
NsiI	ATGCAT	1 cut(s)	393
PagI	TCATGA	1 cut(s)	60
PctI	GAATGC	1 cut(s)	56
PfoI	TCCNGGA	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	168, 474
Psp1406I	AACGTT	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	26
SaqAI	TTAA	3 cut(s)	222, 437, 453
SatI	GCNGC	2 cut(s)	167, 473
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	24
SetI	ASST	7 cut(s)	222, 301, 330, 346, 366, 375, 469
SinI	GGWCC	1 cut(s)	26
Sse9I	AATT	4 cut(s)	74, 179, 211, 401
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	22
TaiI	ACGT	1 cut(s)	375
TasI	AATT	4 cut(s)	74, 179, 211, 401
Tru1I	TTAA	3 cut(s)	222, 437, 453
Tru9I	TTAA	3 cut(s)	222, 437, 453
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	2 cut(s)	166, 472
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	5 cut(s)	49, 261, 366, 371, 376
TspRI	CASTG	1 cut(s)	298
VpaK11BI	GGWCC	1 cut(s)	26
XapI	RAATTY	2 cut(s)	74, 401
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XspI	CTAG	1 cut(s)	315
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.