Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001598.1

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Reverse (-)

44696 .. 46604

Gene Structure 1909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001598.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atgcactgttcctcactagatcccttctctgatcaccatagtgttgttggtatttttgtgaaggcacacttacttgatggccgggcaagtgctggtgctagtgttgattcagccagacagaacttagctgctacgtttgttaatgcatttgtcaatgctggctttggtcaggataagttgatgactgtcccatcagatgcctcaagtggtggtgcatcaggaaactggcttttcaagaataaggagcatgggaagaccagtgctgcagcaaataaagaagatccatctatccaaattggtgcaataatgggtctagggattgcatatgctggtgctgagaacgagcaaatacgtagtaagctgactcctatactaaatgacgccaaagctccccttgatgttatcacattcgctgcaatctccttggggttgatatatgttggttcttgtaatgaggaggtggctcaggcaatcatgtttgcactaatggacagaagtgacgctgagttgggggagccccttactcgcctaatacccctcagcctaggtcttctgtatcttgggaagcaggaaagtgttgaggccactgctgaagtttcaaagacatttcatgaaaaaatcagaaatcattgtgatatgactctgctttcttgtgcttacgcgggaacaggaaatgttctcaagggccctgcagtgcttggtattgcgatgatagcaatggctgaagagttgggacttgaaatggcaattcgttcattggagcatcttctacagtatggagaaccctgttgggcagttcctttggctcttggtctcctttgcatatcaaatccaaaggtattaatctgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

283

Amino Acids

29.85

Weight (kDa)

5.34

Isoelectric Point (pI)

32.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	662
AciI	CCGC	1 cut(s)	662
AclWI	GGATC	2 cut(s)	14, 275
AcoI	YGGCCR	1 cut(s)	79
AcuI	CTGAAG	2 cut(s)	612, 744
AcyI	GRCGYC	1 cut(s)	381
AgsI	TTSAA	3 cut(s)	235, 600, 740
AleI	CACNNNNGTG	1 cut(s)	39
AluBI	AGCT	3 cut(s)	128, 361, 389
AluI	AGCT	3 cut(s)	128, 361, 389
Alw26I	GTCTC	1 cut(s)	818
AlwI	GGATC	2 cut(s)	14, 275
AoxI	GGCC	3 cut(s)	79, 582, 685
ApaI	GGGCCC	1 cut(s)	689
ApeKI	GCWGC	4 cut(s)	128, 263, 266, 413
AseI	ATTAAT	1 cut(s)	842
AspA2I	CCTAGG	1 cut(s)	544
AspS9I	GGNCC	2 cut(s)	685, 686
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	26
AvrII	CCTAGG	1 cut(s)	544
BaeGI	GKGCMC	1 cut(s)	689
BanII	GRGCYC	2 cut(s)	519, 689
BbsI	GAAGAC	2 cut(s)	260, 542
BbvCI	CCTCAGC	1 cut(s)	539
BbvI	GCAGC	4 cut(s)	115, 250, 278, 400
BccI	CCATC	3 cut(s)	71, 199, 292
BclI	TGATCA	1 cut(s)	31
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	818
BfaI	CTAG	4 cut(s)	17, 99, 314, 545
BfmI	CTRYAG	3 cut(s)	264, 690, 770
BisI	GCNGC	4 cut(s)	129, 264, 267, 414
BlnI	CCTAGG	1 cut(s)	544
BlsI	GCNGC	4 cut(s)	130, 265, 268, 415
Bme1390I	CCNGG	1 cut(s)	83
BmgT120I	GGNCC	2 cut(s)	685, 686
BmiI	GGNNCC	2 cut(s)	516, 687
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	3 cut(s)	187, 224, 772
BpiI	GAAGAC	2 cut(s)	260, 542
Bpu10I	CCTNAGC	2 cut(s)	465, 539
BpuEI	CTTGAG	2 cut(s)	187, 665
BpuMI	CCSGG	1 cut(s)	83
BsaAI	YACGTR	1 cut(s)	353
BsaHI	GRCGYC	1 cut(s)	381
BsaI	GGTCTC	1 cut(s)	818
BsaJI	CCNNGG	2 cut(s)	423, 544
Bse1I	ACTGG	2 cut(s)	230, 258
Bse3DI	GCAATG	1 cut(s)	723
BseDI	CCNNGG	2 cut(s)	423, 544
BseMI	GCAATG	1 cut(s)	723
BseMII	CTCAG	4 cut(s)	327, 479, 495, 553
BseNI	ACTGG	2 cut(s)	230, 258
BseRI	GAGGAG	1 cut(s)	470
BseSI	GKGCMC	1 cut(s)	689
BseXI	GCAGC	4 cut(s)	115, 250, 278, 400
Bsh1236I	CGCG	1 cut(s)	662
BshFI	GGCC	3 cut(s)	81, 584, 687
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	2 cut(s)	173, 747
BsmAI	GTCTC	1 cut(s)	818
BsmFI	GGGAC	2 cut(s)	173, 747
BsnI	GGCC	3 cut(s)	81, 584, 687
Bso31I	GGTCTC	1 cut(s)	818
Bsp120I	GGGCCC	1 cut(s)	685
Bsp1286I	GDGCHC	2 cut(s)	519, 689
Bsp143I	GATC	3 cut(s)	19, 31, 280
BspACI	CCGC	1 cut(s)	662
BspANI	GGCC	3 cut(s)	81, 584, 687
BspCNI	CTCAG	4 cut(s)	328, 478, 496, 552
BspFNI	CGCG	1 cut(s)	662
BspHI	TCATGA	1 cut(s)	610
BspLI	GGNNCC	2 cut(s)	516, 687
BspMAI	CTGCAG	2 cut(s)	268, 694
BspPI	GGATC	2 cut(s)	14, 275
BspTNI	GGTCTC	1 cut(s)	818
BsrDI	GCAATG	1 cut(s)	723
BsrI	ACTGG	2 cut(s)	230, 258
BssECI	CCNNGG	2 cut(s)	423, 544
BssMI	GATC	3 cut(s)	19, 31, 280
BssNI	GRCGYC	1 cut(s)	381
BssT1I	CCWWGG	2 cut(s)	423, 544
Bst4CI	ACNGT	3 cut(s)	8, 187, 774
Bst6I	CTCTTC	1 cut(s)	720
BstACI	GRCGYC	1 cut(s)	381
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	5 cut(s)	124, 336, 465, 504, 539
BstFNI	CGCG	1 cut(s)	662
BstKTI	GATC	3 cut(s)	22, 34, 283
BstMAI	GTCTC	1 cut(s)	818
BstMBI	GATC	3 cut(s)	19, 31, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	713
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	3 cut(s)	264, 690, 770
BstSLI	GKGCMC	1 cut(s)	689
BstSNI	TACGTA	1 cut(s)	353
BstUI	CGCG	1 cut(s)	662
BstV1I	GCAGC	4 cut(s)	115, 250, 278, 400
BstV2I	GAAGAC	2 cut(s)	260, 542
BstX2I	RGATCY	2 cut(s)	19, 280
BstYI	RGATCY	2 cut(s)	19, 280
BsuRI	GGCC	3 cut(s)	81, 584, 687
BtgZI	GCGATG	1 cut(s)	722
BtsI	GCAGTG	2 cut(s)	585, 699
BtsIMutI	CAGTG	4 cut(s)	4, 265, 585, 699
Cac8I	GCNNGC	1 cut(s)	160
CciI	TCATGA	1 cut(s)	610
Cfr13I	GGNCC	2 cut(s)	685, 686
CseI	GACGC	2 cut(s)	389, 509
CviAII	CATG	3 cut(s)	248, 475, 611
DdeI	CTNAG	5 cut(s)	124, 336, 465, 504, 539
DpnI	GATC	3 cut(s)	21, 33, 282
DpnII	GATC	3 cut(s)	19, 31, 280
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	720
EarI	CTCTTC	1 cut(s)	720
Eco105I	TACGTA	1 cut(s)	353
Eco130I	CCWWGG	2 cut(s)	423, 544
Eco24I	GRGCYC	2 cut(s)	519, 689
Eco31I	GGTCTC	1 cut(s)	818
Eco57I	CTGAAG	2 cut(s)	612, 744
EcoO109I	RGGNCCY	2 cut(s)	685, 686
EcoT14I	CCWWGG	2 cut(s)	423, 544
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	2 cut(s)	519, 689
ErhI	CCWWGG	2 cut(s)	423, 544
FaeI	CATG	3 cut(s)	251, 478, 614
FalI	AAGNNNNNCTT	4 cut(s)	53, 85, 378, 410
FaqI	GGGAC	2 cut(s)	173, 747
FatI	CATG	3 cut(s)	247, 474, 610
FauI	CCCGC	1 cut(s)	655
FauNDI	CATATG	1 cut(s)	325
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	4 cut(s)	129, 264, 267, 414
FriOI	GRGCYC	2 cut(s)	519, 689
Fsp4HI	GCNGC	4 cut(s)	129, 264, 267, 414
FspBI	CTAG	4 cut(s)	17, 99, 314, 545
GluI	GCNGC	4 cut(s)	129, 264, 267, 414
HaeIII	GGCC	3 cut(s)	81, 584, 687
HapII	CCGG	1 cut(s)	82
HgaI	GACGC	2 cut(s)	389, 509
Hin1I	GRCGYC	1 cut(s)	381
Hin1II	CATG	3 cut(s)	251, 478, 614
HinfI	GANTC	3 cut(s)	107, 364, 640
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	1 cut(s)	26
Hpy188I	TCNGA	3 cut(s)	31, 196, 623
Hpy188III	TCNNGA	4 cut(s)	170, 219, 235, 611
HpyAV	CCTTC	2 cut(s)	34, 55
HpyCH4III	ACNGT	3 cut(s)	8, 187, 774
HpyCH4IV	ACGT	2 cut(s)	134, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	713
HpyF3I	CTNAG	5 cut(s)	124, 336, 465, 504, 539
HpySE526I	ACGT	2 cut(s)	134, 352
Hsp92I	GRCGYC	1 cut(s)	381
Hsp92II	CATG	3 cut(s)	251, 478, 614
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	3 cut(s)	19, 31, 280
LmnI	GCTCC	4 cut(s)	244, 394, 514, 760
Lsp1109I	GCAGC	4 cut(s)	115, 250, 278, 400
LweI	GCATC	3 cut(s)	187, 224, 772
MaeI	CTAG	4 cut(s)	17, 99, 314, 545
MaeII	ACGT	2 cut(s)	134, 352
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	3 cut(s)	21, 33, 282
MboI	GATC	3 cut(s)	19, 31, 280
MboII	GAAGA	5 cut(s)	265, 290, 542, 737, 758
MflI	RGATCY	2 cut(s)	19, 280
MhlI	GDGCHC	2 cut(s)	519, 689
MluCI	AATT	2 cut(s)	294, 747
MlyI	GAGTC	2 cut(s)	358, 634
MnlI	CCTC	6 cut(s)	22, 211, 448, 451, 548, 574
Mph1103I	ATGCAT	1 cut(s)	148
MseI	TTAA	2 cut(s)	141, 842
MslI	CAYNNNNRTG	1 cut(s)	39
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	662
MwoI	GCNNNNNNNGC	1 cut(s)	713
NciI	CCSGG	1 cut(s)	83
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	3 cut(s)	19, 31, 280
NlaIII	CATG	3 cut(s)	251, 478, 614
NlaIV	GGNNCC	2 cut(s)	516, 687
NmuCI	GTSAC	1 cut(s)	497
NsiI	ATGCAT	1 cut(s)	148
OliI	CACNNNNGTG	1 cut(s)	39
PagI	TCATGA	1 cut(s)	610
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	4 cut(s)	130, 265, 268, 415
PleI	GAGTC	2 cut(s)	358, 634
PpsI	GAGTC	2 cut(s)	358, 634
Ppu21I	YACGTR	1 cut(s)	353
PshBI	ATTAAT	1 cut(s)	842
PspN4I	GGNNCC	2 cut(s)	516, 687
PspOMI	GGGCCC	1 cut(s)	685
PspPI	GGNCC	2 cut(s)	685, 686
PstI	CTGCAG	2 cut(s)	268, 694
PsuI	RGATCY	2 cut(s)	19, 280
RseI	CAYNNNNRTG	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	141, 842
SatI	GCNGC	4 cut(s)	129, 264, 267, 414
Sau3AI	GATC	3 cut(s)	19, 31, 280
Sau96I	GGNCC	2 cut(s)	685, 686
SchI	GAGTC	2 cut(s)	358, 634
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	2 cut(s)	519, 689
SetI	ASST	8 cut(s)	130, 137, 355, 363, 391, 462, 550, 840
SfaNI	GCATC	3 cut(s)	187, 224, 772
SfcI	CTRYAG	3 cut(s)	264, 690, 770
SmiMI	CAYNNNNRTG	1 cut(s)	39
SmlI	CTYRAG	2 cut(s)	202, 680
SmoI	CTYRAG	2 cut(s)	202, 680
SnaBI	TACGTA	1 cut(s)	353
Sse9I	AATT	2 cut(s)	294, 747
SsiI	CCGC	1 cut(s)	662
SspMI	CTAG	4 cut(s)	17, 99, 314, 545
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	2 cut(s)	423, 544
TaaI	ACNGT	3 cut(s)	8, 187, 774
TaiI	ACGT	2 cut(s)	137, 355
TasI	AATT	2 cut(s)	294, 747
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	2 cut(s)	141, 842
Tru9I	TTAA	2 cut(s)	141, 842
TscAI	CASTG	3 cut(s)	265, 592, 699
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	4 cut(s)	128, 263, 266, 413
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	3 cut(s)	599, 627, 744
TspRI	CASTG	3 cut(s)	265, 592, 699
VspI	ATTAAT	1 cut(s)	842
XcmI	CCANNNNNNNNNTGG	1 cut(s)	44
XmaJI	CCTAGG	1 cut(s)	544
XspI	CTAG	4 cut(s)	17, 99, 314, 545
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.