Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001598.1

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Reverse (-)

61225 .. 62664

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001598.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atggcagatgattcgctgctgctgggagctgatggagtctgggttaaatctggtgtatggcacaatgccgaagcggaagttgttgaccttttaatggaggtggaagaccttgatctgttagttgagcatgttgataagacaaattttaagaggacttgtctctacctcaccagttcggcaagataccttcctggaccagatgatatgttaggtagtaattttgagcttaacgatgagatggttgcagaagatgaagaaagagaagcattgcaggacattatcaataacgctaaactcagtgaaggttatcttacccttgctcgtgctattgaggtcatggaggccaaaactccagaagatatttacaaggttttgaacttttcatttcatgtcatagatctgacacttaatggatactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

139

Amino Acids

15.66

Weight (kDa)

4.17

Isoelectric Point (pI)

22.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	142
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	1 cut(s)	376
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	2 cut(s)	29, 226
AluI	AGCT	2 cut(s)	29, 226
Alw26I	GTCTC	1 cut(s)	164
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	2 cut(s)	16, 19
ApoI	RAATTY	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	194
BauI	CACGAG	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	3, 6
BccI	CCATC	2 cut(s)	26, 232
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	192
BciVI	GTATCC	1 cut(s)	407
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	418
BfuI	GTATCC	1 cut(s)	407
BglII	AGATCT	1 cut(s)	397
BisI	GCNGC	2 cut(s)	17, 20
BlsI	GCNGC	2 cut(s)	18, 21
Bme1390I	CCNGG	1 cut(s)	192
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	194
BmrFI	CCNGG	1 cut(s)	192
BpiI	GAAGAC	1 cut(s)	111
BpmI	CTGGAG	1 cut(s)	336
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	310
BseNI	ACTGG	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	3, 6
BseYI	CCCAGC	1 cut(s)	22
BshFI	GGCC	1 cut(s)	344
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	344
Bsp143I	GATC	2 cut(s)	112, 397
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	1 cut(s)	309
BsrDI	GCAATG	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	171
BssMI	GATC	2 cut(s)	112, 397
BssSI	CACGAG	1 cut(s)	321
Bst2BI	CACGAG	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	296
BstKTI	GATC	2 cut(s)	115, 400
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	2 cut(s)	112, 397
BstNI	CCWGG	1 cut(s)	192
BstNSI	RCATGY	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	190
BstV1I	GCAGC	2 cut(s)	3, 6
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BsuI	GTATCC	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	344
BtsIMutI	CAGTG	1 cut(s)	304
Cfr13I	GGNCC	1 cut(s)	194
CviAII	CATG	3 cut(s)	128, 337, 389
CviJI	RGCY	3 cut(s)	29, 226, 344
CviKI_1	RGCY	3 cut(s)	29, 226, 344
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	2 cut(s)	114, 399
DpnII	GATC	2 cut(s)	112, 397
Eco47I	GGWCC	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	190
FaeI	CATG	3 cut(s)	131, 340, 392
FaiI	YATR	6 cut(s)	58, 129, 206, 338, 390, 395
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FatI	CATG	3 cut(s)	127, 336, 388
Fnu4HI	GCNGC	2 cut(s)	17, 20
Fsp4HI	GCNGC	2 cut(s)	17, 20
FspBI	CTAG	1 cut(s)	418
GluI	GCNGC	2 cut(s)	17, 20
GsaI	CCCAGC	1 cut(s)	26
GsuI	CTGGAG	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	344
Hin1II	CATG	3 cut(s)	131, 340, 392
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	2 cut(s)	11, 36
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	402
Hpy188III	TCNNGA	1 cut(s)	353
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	197, 296
HpyCH4V	TGCA	2 cut(s)	245, 271
HpyF3I	CTNAG	1 cut(s)	296
Hsp92II	CATG	3 cut(s)	131, 340, 392
Kzo9I	GATC	2 cut(s)	112, 397
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	9 cut(s)	8, 25, 36, 177, 184, 204, 210, 257, 366
Lsp1109I	GCAGC	2 cut(s)	3, 6
MaeI	CTAG	1 cut(s)	418
MalI	GATC	2 cut(s)	114, 399
MboI	GATC	2 cut(s)	112, 397
MboII	GAAGA	4 cut(s)	116, 260, 266, 368
MflI	RGATCY	1 cut(s)	397
MluCI	AATT	2 cut(s)	142, 217
MlyI	GAGTC	1 cut(s)	45
MnlI	CCTC	5 cut(s)	91, 144, 176, 325, 334
MseI	TTAA	5 cut(s)	45, 92, 147, 228, 408
MspR9I	CCNGG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	192
NdeII	GATC	2 cut(s)	112, 397
NlaIII	CATG	3 cut(s)	131, 340, 392
NspI	RCATGY	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	190
PkrI	GCNGC	2 cut(s)	18, 21
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	190
PspFI	CCCAGC	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	397
SaqAI	TTAA	5 cut(s)	45, 92, 147, 228, 408
SatI	GCNGC	2 cut(s)	17, 20
Sau3AI	GATC	2 cut(s)	112, 397
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	1 cut(s)	45
ScrFI	CCNGG	1 cut(s)	192
SinI	GGWCC	1 cut(s)	194
Sse9I	AATT	2 cut(s)	142, 217
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	1 cut(s)	418
StyD4I	CCNGG	1 cut(s)	190
TasI	AATT	2 cut(s)	142, 217
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	5 cut(s)	45, 92, 147, 228, 408
Tru9I	TTAA	5 cut(s)	45, 92, 147, 228, 408
TscAI	CASTG	1 cut(s)	304
TseI	GCWGC	2 cut(s)	16, 19
TspDTI	ATGAA	3 cut(s)	267, 372, 377
TspRI	CASTG	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	1 cut(s)	142
XceI	RCATGY	1 cut(s)	131
XspI	CTAG	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.