Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Forward (+)

43817047 .. 43824468

Gene Structure 7422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018972

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2688 bp

ATGGCATCGCAAGATCCGAACACGAACACCGCAAGCGGCAGCGGCAAGCAGGACGAGCCCACCAAACCGCCGCCCCCAAAGGATTTCAAAAAGAAAGATGACAAGAAGGACGAGGATTTGTCCGACGAAGATTTGGCGTTGAAACAACAATTGGAGTTGTATGTGGAGAGGGTTCAAGATCCCGATCCCGGGTTGCAGAAGGTTGCCCTTGAGAGTATGAGGCAGGAAATTCGTACCTCAACTAGTTCCATGACCTCAGTTCCAAAGCCGTTAAAATATCTTCGCCCACATTACGGAACTCTAAAAGCATATTATGAAACAATGAGTGATTCGGATTTGAAGAAATACCTCGCAGATATATTGTCGGTTTTGGCATTGACCATGTCTGCTGAAGGAGAACGGGAAAGCTTAAAGTTTAGATTATTGGGTTCAGATGGTGATATTGGTTCATGGGGCCATGAATATGTCAGGAACTTAGCTGGAGAAATTGCTCAAGAATATGCCAAGCGACAGTTACAGAGTGATGAGACCCCCTTCGATGATCTAATGGAACTAGTACAACAAATAGTTGCTTTTCACATGAGGCACAATGCCGAACCGGAAGCTGTTGACCTTTTAATGGAGGTGGAAGACCTTGATCTGCTAGTCGAGCATGTTGATAAGACAAATTTTAAGAGGACTTGTCTCTACCTCACCAGTTCGGCAAGATACCTTCCTGGACCAGATGATATGTTAGTTTTGGATATTGCATTCATGATATATCTGAAATTTGAAGAGTATCCAAATGCACTTCAGATTGCTCTTTTCCTCGACAATAAGGAGTATGTAAAGCAAGTCTTTACCTCTTGTGATGATCTGCTGCGTAAAAAGCAATTCTGTTACATCCTTGCCAGACATGGTAGTAATTTTGAGCTTAATGATGAGATGGTTGCAGAAGATGAAGAAAGAGAAGCATTGCAGGATATTATCAATAACGCTAAACTCAGTGAAGGTTATCTTACCCTTGCTCGTGATATTGAGGTCATGGAGGCCAAAACTCCAGAAGATATATACAAGGCACACTTACTTGATGGCCGGGCAAGTGCTGGTGCTAGTGTTGATTCAGCCAGACAGAACTTAGCTGCTACGTTTGTTAATGCATTTGTCAACGCTGGCTTTGGTCAGGATAAGTTGATGACTATCCCATCAGATGCCTCGAGTGGTGGTGCTTCAGGAAACTGGCTTTTCAAGAATAAGGAGCATGGGAAGACCAGTGCTGCAGCAAGTCTGGGTACAATTTTACTGTGGGATGTTGACTCCGGGCTGGCTCAAATTGACAAGTACTTCCACAGCAATGACAATCATGTTATTGCTGGTGCGTTGTTAGGGGTTGGGATTGTCAATTGCAGCATAAAAAATGATTGTGATCCAGCATTGGCACTTCTGGGCGAATACATAGACAAAGAAGATCCATCTATCCGAATTGGTGCAATAATGGGTCTAGGGATTGCATATGCTGGTGCTGAGAACGAGCAGATACGTAGTAAGCTGACTCCTATACTAAATGACGCCAAAGCTCCCCTTGATGTTATCACATTCGCTGCAATCTCCTTGGGGTTGATATATGTTGGTTCTTGCAATGAGGAGGTGGCTCAGGCAATCATATTTGCACTAATGGACCGAAGTGACGCTGAGTTGGGGGAGCCCCTTGCTCGCCTAATACCCCTCAGCCTAGGTCTTCTGTATCTTGGGAAGCAGGATAGTGTTGAGGCCACTGCTGAAGTTTCAAAGACATTTCATGAAAAAATCAGAAAACATTGTGATATGACTCTGCTTTCTTGTGCTTATGCGGGAACAGGAAATGTTCTCAAGGTTCAAAACCTTCTTGGCCATTGTTCACAACATCTTGAGAAGGGTGAAACACACCAGGGCCCTGCTGTGCTTGGTATTGCGATGATAGCAATGGCTGAAGAGTTGGGACTTGAAATGGCAATTCGTTCATTGGAGCATCTTCTACAGTATGGAGAACAAAATATCCGTCGGGCAGTTCCTTTGGCTCTTGGTCTCCTTTGCATATCAAATCCAAAGGTCACCGTTATGGACACATTAAGCAGACTTAGCCATGATACGGATTCAGAAGTAGCAATGGCGGCAGTAATTTCCTTAGGTGTGATAGGGGCAGGAACCAACAATGCCAGAATAGCTGCCATGCTTCGCAATCTCTCAAGTTATTACTACAAGGATGCCAGCCTACTCTTCTGTGTGCGAATTGCTCAAGGTCTTGTTCATTTAGGAAAGGGTTTATTGACTCTAAATCCATATCATTCTGATCGCTTCTTGTTATCACCGGCAGCACTTGGTGGAATCATAACCATGCTGCATGCATGTCTTGATATGAAAGCCATCATTTTGGGGAAGTATCATTATGTTCTCTACTTTCTGATATTGGCAATGCAGCCGAGAATGTTGCTAACTGTAGACGAGAATCTAAAGCCGTTGTCTGTCCCTGTTCGGGTTGGCCAAGCTGTGGATGTTGTTGGCCAGGCTGGTCGTCCCAAAACAATTACTGGCTTTCAGACCCACTCAACACCAGTTCTTTTGGCTGCCGGTGATAGAGCTGAGCTAGCGACTGAGAAGTATATTCCCCTTTCCCCAATCCTTGAAGGGTTTGTGATTTTGAAAGAAAATCCAGAGTATCGGGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

896

Amino Acids

98.39

Weight (kDa)

5.08

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN1_RPN2_N	PF17781	51 - 355	5.6e-126	RPN1 N-terminal domain
RPN1_C	PF18051	839 - 892	4.4e-31	26S proteasome non-ATPase regulatory subunit RPN1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	2506
AccI	GTMKAC	1 cut(s)	2457
AciI	CCGC	7 cut(s)	30, 36, 42, 68, 71, 1829, 2129
AclWI	GGATC	5 cut(s)	8, 173, 179, 1400, 1442
AcoI	YGGCCR	4 cut(s)	1072, 1867, 2497, 2518
AcsI	RAATTY	3 cut(s)	228, 667, 767
AcuI	CTGAAG	5 cut(s)	411, 776, 1194, 1779, 1968
AcyI	GRCGYC	1 cut(s)	1548
AdeI	CACNNNGTG	1 cut(s)	2339
AfaI	GTAC	4 cut(s)	235, 558, 1273, 1322
AfiI	CCNNNNNNNGG	7 cut(s)	188, 189, 293, 619, 2107, 2491, 2506
AhlI	ACTAGT	2 cut(s)	242, 553
AjnI	CCWGG	3 cut(s)	715, 1905, 2520
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AloI	GAACNNNNNNTCC	2 cut(s)	1998, 2030
Alw26I	GTCTC	3 cut(s)	521, 689, 2048
AlwI	GGATC	5 cut(s)	8, 173, 179, 1400, 1442
Ama87I	CYCGRG	2 cut(s)	188, 1195
AoxI	GGCC	8 cut(s)	454, 1029, 1072, 1749, 1867, 1909, 2497, 2518
ApaI	GGGCCC	1 cut(s)	1913
ApoI	RAATTY	3 cut(s)	228, 667, 767
ArsI	GACNNNNNNTTYG	2 cut(s)	2002, 2034
AspA2I	CCTAGG	1 cut(s)	1711
AspS9I	GGNCC	5 cut(s)	454, 719, 1657, 1909, 1910
AsuC2I	CCSGG	4 cut(s)	189, 190, 1076, 1300
AsuHPI	GGTGA	6 cut(s)	449, 685, 1907, 2062, 2316, 2600
AsuNHI	GCTAGC	1 cut(s)	2602
AvaI	CYCGRG	2 cut(s)	188, 1195
AvaII	GGWCC	2 cut(s)	719, 1657
AvrII	CCTAGG	1 cut(s)	1711
AxyI	CCTNAGG	1 cut(s)	2143
BaeGI	GKGCMC	1 cut(s)	1913
BalI	TGGCCA	3 cut(s)	1869, 2499, 2520
BanII	GRGCYC	3 cut(s)	60, 1686, 1913
BauI	CACGAG	1 cut(s)	1008
BbsI	GAAGAC	3 cut(s)	636, 1253, 1709
BbvCI	CCTCAGC	1 cut(s)	1706
BccI	CCATC	6 cut(s)	428, 919, 1064, 1192, 1459, 2390
BceAI	ACGGC	2 cut(s)	253, 2458
BcgI	CGANNNNNNTGC	4 cut(s)	212, 246, 2428, 2462
BciT130I	CCWGG	3 cut(s)	717, 1907, 2522
BciVI	GTATCC	1 cut(s)	789
BcnI	CCSGG	4 cut(s)	189, 190, 1076, 1300
BcoDI	GTCTC	3 cut(s)	521, 689, 2048
BcuI	ACTAGT	2 cut(s)	242, 553
BfaI	CTAG	7 cut(s)	243, 554, 644, 1092, 1481, 1712, 2603
BfmI	CTRYAG	3 cut(s)	1257, 1994, 2454
BfuI	GTATCC	1 cut(s)	789
BlnI	CCTAGG	1 cut(s)	1711
BlpI	GCTNAGC	1 cut(s)	2598
BmcAI	AGTACT	1 cut(s)	1322
Bme1390I	CCNGG	7 cut(s)	189, 190, 717, 1076, 1300, 1907, 2522
Bme18I	GGWCC	2 cut(s)	719, 1657
BmeT110I	CYCGRG	2 cut(s)	188, 1195
BmgT120I	GGNCC	5 cut(s)	454, 719, 1657, 1909, 1910
BmiI	GGNNCC	4 cut(s)	455, 1683, 1911, 2164
BmrFI	CCNGG	7 cut(s)	189, 190, 717, 1076, 1300, 1907, 2522
BmsI	GCATC	4 cut(s)	14, 1180, 1996, 2212
BmtI	GCTAGC	1 cut(s)	2606
BpiI	GAAGAC	3 cut(s)	636, 1253, 1709
BpmI	CTGGAG	2 cut(s)	501, 1023
Bpu10I	CCTNAGC	2 cut(s)	1632, 1706
Bpu1102I	GCTNAGC	1 cut(s)	2598
BpuEI	CTTGAG	6 cut(s)	230, 477, 1832, 1907, 2188, 2238
BpuMI	CCSGG	4 cut(s)	189, 190, 1076, 1300
BsaAI	YACGTR	1 cut(s)	1520
BsaBI	GATNNNNATC	3 cut(s)	183, 1178, 1404
BsaHI	GRCGYC	1 cut(s)	1548
BsaI	GGTCTC	2 cut(s)	521, 2048
BsaJI	CCNNGG	4 cut(s)	188, 1590, 1711, 1906
BsaWI	WCCGGW	1 cut(s)	598
Bsc4I	CCNNNNNNNGG	7 cut(s)	188, 189, 293, 619, 2107, 2491, 2506
Bse118I	RCCGGY	2 cut(s)	2326, 2585
Bse1I	ACTGG	5 cut(s)	696, 1223, 1251, 2551, 2570
Bse21I	CCTNAGG	1 cut(s)	2143
Bse3DI	GCAATG	6 cut(s)	953, 1339, 1624, 1947, 2130, 2436
Bse8I	GATNNNNATC	3 cut(s)	183, 1178, 1404
BseBI	CCWGG	3 cut(s)	717, 1907, 2522
BseDI	CCNNGG	4 cut(s)	188, 1590, 1711, 1906
BseGI	GGATG	4 cut(s)	882, 1294, 2227, 2515
BseJI	GATNNNNATC	3 cut(s)	183, 1178, 1404
BseLI	CCNNNNNNNGG	7 cut(s)	188, 189, 293, 619, 2107, 2491, 2506
BseMI	GCAATG	6 cut(s)	953, 1339, 1624, 1947, 2130, 2436
BseMII	CTCAG	8 cut(s)	270, 997, 1494, 1646, 1662, 1720, 2589, 2601
BseNI	ACTGG	5 cut(s)	696, 1223, 1251, 2551, 2570
BseRI	GAGGAG	1 cut(s)	1637
BseSI	GKGCMC	1 cut(s)	1913
BshFI	GGCC	8 cut(s)	456, 1031, 1074, 1751, 1869, 1911, 2499, 2520
BsiHKCI	CYCGRG	2 cut(s)	188, 1195
BsiSI	CCGG	6 cut(s)	189, 599, 1075, 1299, 2327, 2586
BslFI	GGGAC	3 cut(s)	1971, 2468, 2517
BslI	CCNNNNNNNGG	7 cut(s)	188, 189, 293, 619, 2107, 2491, 2506
BsmAI	GTCTC	3 cut(s)	521, 689, 2048
BsmFI	GGGAC	3 cut(s)	1971, 2468, 2517
BsmI	GAATGC	1 cut(s)	749
BsnI	GGCC	8 cut(s)	456, 1031, 1074, 1751, 1869, 1911, 2499, 2520
Bso31I	GGTCTC	2 cut(s)	521, 2048
BsoBI	CYCGRG	2 cut(s)	188, 1195
Bsp120I	GGGCCC	1 cut(s)	1909
Bsp1286I	GDGCHC	3 cut(s)	60, 1686, 1913
Bsp143I	GATC	9 cut(s)	13, 178, 184, 541, 637, 853, 1405, 1447, 2308
Bsp1720I	GCTNAGC	1 cut(s)	2598
BspACI	CCGC	7 cut(s)	30, 36, 42, 68, 71, 1829, 2129
BspANI	GGCC	8 cut(s)	456, 1031, 1074, 1751, 1869, 1911, 2499, 2520
BspCNI	CTCAG	8 cut(s)	269, 996, 1495, 1645, 1663, 1719, 2590, 2602
BspHI	TCATGA	2 cut(s)	753, 1777
BspLI	GGNNCC	4 cut(s)	455, 1683, 1911, 2164
BspMAI	CTGCAG	1 cut(s)	1261
BspOI	GCTAGC	1 cut(s)	2606
BspPI	GGATC	5 cut(s)	8, 173, 179, 1400, 1442
BspTNI	GGTCTC	2 cut(s)	521, 2048
BsrDI	GCAATG	6 cut(s)	953, 1339, 1624, 1947, 2130, 2436
BsrFI	RCCGGY	2 cut(s)	2326, 2585
BsrI	ACTGG	5 cut(s)	696, 1223, 1251, 2551, 2570
BssAI	RCCGGY	2 cut(s)	2326, 2585
BssECI	CCNNGG	4 cut(s)	188, 1590, 1711, 1906
BssMI	GATC	9 cut(s)	13, 178, 184, 541, 637, 853, 1405, 1447, 2308
BssNI	GRCGYC	1 cut(s)	1548
BssSI	CACGAG	1 cut(s)	1008
BssT1I	CCWWGG	2 cut(s)	1590, 1711
Bst2BI	CACGAG	1 cut(s)	1008
Bst2UI	CCWGG	3 cut(s)	717, 1907, 2522
Bst4CI	ACNGT	5 cut(s)	513, 1284, 1998, 2074, 2455
Bst6I	CTCTTC	4 cut(s)	768, 1944, 2240, 2676
BstACI	GRCGYC	1 cut(s)	1548
BstBAI	YACGTR	1 cut(s)	1520
BstC8I	GCNNGC	8 cut(s)	34, 47, 1153, 1305, 1693, 2227, 2361, 2604
BstEII	GGTNACC	1 cut(s)	2068
BstF5I	GGATG	4 cut(s)	882, 1294, 2227, 2515
BstKTI	GATC	9 cut(s)	16, 181, 187, 544, 640, 856, 1408, 1450, 2311
BstMAI	GTCTC	3 cut(s)	521, 689, 2048
BstMBI	GATC	9 cut(s)	13, 178, 184, 541, 637, 853, 1405, 1447, 2308
BstMWI	GCNNNNNNNGC	9 cut(s)	42, 55, 649, 868, 1937, 2097, 2129, 2180, 2603
BstNI	CCWGG	3 cut(s)	717, 1907, 2522
BstNSI	RCATGY	3 cut(s)	656, 2363, 2367
BstPI	GGTNACC	1 cut(s)	2068
BstSCI	CCNGG	7 cut(s)	187, 188, 715, 1074, 1298, 1905, 2520
BstSFI	CTRYAG	3 cut(s)	1257, 1994, 2454
BstSLI	GKGCMC	1 cut(s)	1913
BstSNI	TACGTA	1 cut(s)	1520
BstV2I	GAAGAC	3 cut(s)	636, 1253, 1709
BstX2I	RGATCY	3 cut(s)	13, 178, 1447
BstXI	CCANNNNNNTGG	1 cut(s)	2389
BstYI	RGATCY	3 cut(s)	13, 178, 1447
Bsu36I	CCTNAGG	1 cut(s)	2143
BsuI	GTATCC	1 cut(s)	789
BsuRI	GGCC	8 cut(s)	456, 1031, 1074, 1751, 1869, 1911, 2499, 2520
BtgZI	GCGATG	1 cut(s)	1946
BtsCI	GGATG	4 cut(s)	882, 1294, 2227, 2515
BtsI	GCAGTG	1 cut(s)	1752
BtsIMutI	CAGTG	3 cut(s)	991, 1258, 1752
Cac8I	GCNNGC	8 cut(s)	34, 47, 1153, 1305, 1693, 2227, 2361, 2604
CciI	TCATGA	2 cut(s)	753, 1777
Cfr10I	RCCGGY	2 cut(s)	2326, 2585
Cfr13I	GGNCC	5 cut(s)	454, 719, 1657, 1909, 1910
Cfr9I	CCCGGG	1 cut(s)	188
CseI	GACGC	2 cut(s)	1556, 1676
Csp6I	GTAC	4 cut(s)	234, 557, 1272, 1321
CviQI	GTAC	4 cut(s)	234, 557, 1272, 1321
DpnI	GATC	9 cut(s)	15, 180, 186, 543, 639, 855, 1407, 1449, 2310
DpnII	GATC	9 cut(s)	13, 178, 184, 541, 637, 853, 1405, 1447, 2308
DraIII	CACNNNGTG	1 cut(s)	2339
EaeI	YGGCCR	4 cut(s)	1072, 1867, 2497, 2518
Eam1104I	CTCTTC	4 cut(s)	768, 1944, 2240, 2676
EarI	CTCTTC	4 cut(s)	768, 1944, 2240, 2676
Eco105I	TACGTA	1 cut(s)	1520
Eco130I	CCWWGG	2 cut(s)	1590, 1711
Eco24I	GRGCYC	3 cut(s)	60, 1686, 1913
Eco31I	GGTCTC	2 cut(s)	521, 2048
Eco47I	GGWCC	2 cut(s)	719, 1657
Eco57I	CTGAAG	5 cut(s)	411, 776, 1194, 1779, 1968
Eco81I	CCTNAGG	1 cut(s)	2143
Eco88I	CYCGRG	2 cut(s)	188, 1195
Eco91I	GGTNACC	1 cut(s)	2068
EcoO109I	RGGNCCY	2 cut(s)	1909, 1910
EcoO65I	GGTNACC	1 cut(s)	2068
EcoRII	CCWGG	3 cut(s)	715, 1905, 2520
EcoT14I	CCWWGG	2 cut(s)	1590, 1711
EcoT22I	ATGCAT	2 cut(s)	1141, 2365
EcoT38I	GRGCYC	3 cut(s)	60, 1686, 1913
ErhI	CCWWGG	2 cut(s)	1590, 1711
FalI	AAGNNNNNCTT	8 cut(s)	821, 853, 981, 1013, 1046, 1078, 1545, 1577
FaqI	GGGAC	3 cut(s)	1971, 2468, 2517
FauI	CCCGC	1 cut(s)	1822
FauNDI	CATATG	1 cut(s)	1492
FblI	GTMKAC	1 cut(s)	2457
FokI	GGATG	4 cut(s)	869, 1301, 2234, 2522
FriOI	GRGCYC	3 cut(s)	60, 1686, 1913
FspBI	CTAG	7 cut(s)	243, 554, 644, 1092, 1481, 1712, 2603
GsuI	CTGGAG	2 cut(s)	501, 1023
HaeIII	GGCC	8 cut(s)	456, 1031, 1074, 1751, 1869, 1911, 2499, 2520
HapII	CCGG	6 cut(s)	189, 599, 1075, 1299, 2327, 2586
HgaI	GACGC	2 cut(s)	1556, 1676
Hin1I	GRCGYC	1 cut(s)	1548
HincII	GTYRAC	3 cut(s)	610, 1147, 1294
HindII	GTYRAC	3 cut(s)	610, 1147, 1294
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	9 cut(s)	329, 1100, 1295, 1531, 1807, 2111, 2287, 2343, 2464
HpaII	CCGG	6 cut(s)	189, 599, 1075, 1299, 2327, 2586
HphI	GGTGA	6 cut(s)	449, 685, 1907, 2062, 2316, 2600
Hpy166II	GTNNAC	5 cut(s)	610, 1147, 1294, 1877, 2458
Hpy8I	GTNNAC	5 cut(s)	610, 1147, 1294, 1877, 2458
Hpy99I	CGWCG	2 cut(s)	128, 2022
HpyAV	CCTTC	9 cut(s)	100, 193, 386, 544, 722, 983, 1871, 1885, 2636
HpyCH4III	ACNGT	5 cut(s)	513, 1284, 1998, 2074, 2455
HpyCH4IV	ACGT	2 cut(s)	1127, 1519
HpyF10VI	GCNNNNNNNGC	9 cut(s)	42, 55, 649, 868, 1937, 2097, 2129, 2180, 2603
HpySE526I	ACGT	2 cut(s)	1127, 1519
Hsp92I	GRCGYC	1 cut(s)	1548
Kzo9I	GATC	9 cut(s)	13, 178, 184, 541, 637, 853, 1405, 1447, 2308
LmnI	GCTCC	4 cut(s)	1237, 1561, 1681, 1984
LweI	GCATC	4 cut(s)	14, 1180, 1996, 2212
MaeI	CTAG	7 cut(s)	243, 554, 644, 1092, 1481, 1712, 2603
MaeII	ACGT	2 cut(s)	1127, 1519
MaeIII	GTNAC	4 cut(s)	513, 878, 1664, 2068
MalI	GATC	9 cut(s)	15, 180, 186, 543, 639, 855, 1407, 1449, 2310
MboI	GATC	9 cut(s)	13, 178, 184, 541, 637, 853, 1405, 1447, 2308
MfeI	CAATTG	2 cut(s)	149, 1381
MflI	RGATCY	3 cut(s)	13, 178, 1447
MhlI	GDGCHC	3 cut(s)	60, 1686, 1913
MlsI	TGGCCA	3 cut(s)	1869, 2499, 2520
MluNI	TGGCCA	3 cut(s)	1869, 2499, 2520
MlyI	GAGTC	4 cut(s)	1289, 1525, 1801, 2281
MmeI	TCCRAC	1 cut(s)	147
Mox20I	TGGCCA	3 cut(s)	1869, 2499, 2520
Mph1103I	ATGCAT	2 cut(s)	1141, 2365
MscI	TGGCCA	3 cut(s)	1869, 2499, 2520
MseI	TTAA	7 cut(s)	272, 410, 617, 672, 915, 1134, 2087
MslI	CAYNNNNRTG	4 cut(s)	462, 1332, 2075, 2351
Msp20I	TGGCCA	3 cut(s)	1869, 2499, 2520
MspA1I	CMGCKG	1 cut(s)	42
MspI	CCGG	6 cut(s)	189, 599, 1075, 1299, 2327, 2586
MspR9I	CCNGG	7 cut(s)	189, 190, 717, 1076, 1300, 1907, 2522
MunI	CAATTG	2 cut(s)	149, 1381
Mva1269I	GAATGC	1 cut(s)	749
MvaI	CCWGG	3 cut(s)	717, 1907, 2522
MwoI	GCNNNNNNNGC	9 cut(s)	42, 55, 649, 868, 1937, 2097, 2129, 2180, 2603
NciI	CCSGG	4 cut(s)	189, 190, 1076, 1300
NdeI	CATATG	1 cut(s)	1492
NdeII	GATC	9 cut(s)	13, 178, 184, 541, 637, 853, 1405, 1447, 2308
NheI	GCTAGC	1 cut(s)	2602
NlaIV	GGNNCC	4 cut(s)	455, 1683, 1911, 2164
NmeAIII	GCCGAG	1 cut(s)	2463
NmuCI	GTSAC	2 cut(s)	1664, 2068
NsiI	ATGCAT	2 cut(s)	1141, 2365
NspI	RCATGY	3 cut(s)	656, 2363, 2367
PaeI	GCATGC	1 cut(s)	2363
PaeR7I	CTCGAG	1 cut(s)	1195
PagI	TCATGA	2 cut(s)	753, 1777
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PctI	GAATGC	1 cut(s)	749
PfeI	GAWTC	5 cut(s)	329, 1100, 2111, 2343, 2464
PflFI	GACNNNGTC	1 cut(s)	382
PflMI	CCANNNNNTGG	1 cut(s)	2506
PfoI	TCCNGGA	1 cut(s)	715
PleI	GAGTC	4 cut(s)	1289, 1525, 1801, 2281
PpsI	GAGTC	4 cut(s)	1289, 1525, 1801, 2281
Ppu21I	YACGTR	1 cut(s)	1520
Psp6I	CCWGG	3 cut(s)	715, 1905, 2520
PspEI	GGTNACC	1 cut(s)	2068
PspGI	CCWGG	3 cut(s)	715, 1905, 2520
PspN4I	GGNNCC	4 cut(s)	455, 1683, 1911, 2164
PspOMI	GGGCCC	1 cut(s)	1909
PspPI	GGNCC	5 cut(s)	454, 719, 1657, 1909, 1910
PspXI	VCTCGAGB	1 cut(s)	1195
PstI	CTGCAG	1 cut(s)	1261
PsuI	RGATCY	3 cut(s)	13, 178, 1447
PsyI	GACNNNGTC	1 cut(s)	382
RsaI	GTAC	4 cut(s)	235, 558, 1273, 1322
RsaNI	GTAC	4 cut(s)	234, 557, 1272, 1321
RseI	CAYNNNNRTG	4 cut(s)	462, 1332, 2075, 2351
SaqAI	TTAA	7 cut(s)	272, 410, 617, 672, 915, 1134, 2087
Sau3AI	GATC	9 cut(s)	13, 178, 184, 541, 637, 853, 1405, 1447, 2308
Sau96I	GGNCC	5 cut(s)	454, 719, 1657, 1909, 1910
ScaI	AGTACT	1 cut(s)	1322
SchI	GAGTC	4 cut(s)	1289, 1525, 1801, 2281
ScrFI	CCNGG	7 cut(s)	189, 190, 717, 1076, 1300, 1907, 2522
SduI	GDGCHC	3 cut(s)	60, 1686, 1913
SfaNI	GCATC	4 cut(s)	14, 1180, 1996, 2212
SfcI	CTRYAG	3 cut(s)	1257, 1994, 2454
Sfr274I	CTCGAG	1 cut(s)	1195
SinI	GGWCC	2 cut(s)	719, 1657
SlaI	CTCGAG	1 cut(s)	1195
SmaI	CCCGGG	1 cut(s)	190
SmiMI	CAYNNNNRTG	4 cut(s)	462, 1332, 2075, 2351
SmlI	CTYRAG	7 cut(s)	209, 492, 1195, 1847, 1886, 2203, 2253
SmoI	CTYRAG	7 cut(s)	209, 492, 1195, 1847, 1886, 2203, 2253
SnaBI	TACGTA	1 cut(s)	1520
SpeI	ACTAGT	2 cut(s)	242, 553
SphI	GCATGC	1 cut(s)	2363
SsiI	CCGC	7 cut(s)	30, 36, 42, 68, 71, 1829, 2129
SspMI	CTAG	7 cut(s)	243, 554, 644, 1092, 1481, 1712, 2603
StyD4I	CCNGG	7 cut(s)	187, 188, 715, 1074, 1298, 1905, 2520
StyI	CCWWGG	2 cut(s)	1590, 1711
TaaI	ACNGT	5 cut(s)	513, 1284, 1998, 2074, 2455
TaiI	ACGT	2 cut(s)	1130, 1522
TaqI	TCGA	4 cut(s)	537, 648, 810, 1196
TaqII	GACCGA	1 cut(s)	1674
TatI	WGTACW	2 cut(s)	556, 1320
TauI	GCSGC	4 cut(s)	39, 45, 73, 2132
TfiI	GAWTC	5 cut(s)	329, 1100, 2111, 2343, 2464
Tru1I	TTAA	7 cut(s)	272, 410, 617, 672, 915, 1134, 2087
Tru9I	TTAA	7 cut(s)	272, 410, 617, 672, 915, 1134, 2087
TscAI	CASTG	3 cut(s)	991, 1258, 1759
TseFI	GTSAC	2 cut(s)	1664, 2068
Tsp45I	GTSAC	2 cut(s)	1664, 2068
TspGWI	ACGGA	3 cut(s)	309, 2006, 2123
TspMI	CCCGGG	1 cut(s)	188
TspRI	CASTG	3 cut(s)	991, 1258, 1759
Tth111I	GACNNNGTC	1 cut(s)	382
Van91I	CCANNNNNTGG	1 cut(s)	2506
VpaK11BI	GGWCC	2 cut(s)	719, 1657
XapI	RAATTY	3 cut(s)	228, 667, 767
XceI	RCATGY	3 cut(s)	656, 2363, 2367
XhoI	CTCGAG	1 cut(s)	1195
XmaI	CCCGGG	1 cut(s)	188
XmaJI	CCTAGG	1 cut(s)	1711
XmiI	GTMKAC	1 cut(s)	2457
XspI	CTAG	7 cut(s)	243, 554, 644, 1092, 1481, 1712, 2603
ZrmI	AGTACT	1 cut(s)	1322
Zsp2I	ATGCAT	2 cut(s)	1141, 2365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.