Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Forward (+)

29695073 .. 29696979

Gene Structure 1907 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0276100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCCACCTTTGATGGAATTCATAGTCTCTGTGCTCTCGGTTTTGAGGTGCGGTGAGGCGTTTCTGCCTCTGGACCCTTCCTGGCCAAAACAGAGGCTACTCTCCGTGTGGTTTTCCATAGGTGGAGAGTTTGTGACAGTGAGTGATGGAGGAGAGTGTAGGCGTGAGAGTGAGAAAGAGGATGAGAGGTTGTTCTGTTATGTAATGTATAGTTCAGGCTCGACGGGGAAGCCGAAAGGTGTTTGTGGCACTGAACAAGGTCTTTGGAATCGGTTTCTGTGGATGCAAGAATTGTATCCACTGAATGGAGAGGAGGTTTTGTTGTTCAAGACAGCAATAAGCTTTGTTGATCACTTTCAAGAATTTCTTAGCGCTATTCTTACTGGTTCTGCTTTGGTTATACCTCCTTTCAATCAACTTAAACAGAATGTGTTCTCCATTGTGGATTTTCTACAGATCCGCATAAGGCTTTTCAATCAGGTTGTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

163

Amino Acids

18.55

Weight (kDa)

5.05

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	56 - 145	9.5e-13	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	305
AciI	CCGC	2 cut(s)	51, 460
AclWI	GGATC	1 cut(s)	451
AcoI	YGGCCR	1 cut(s)	83
AcsI	RAATTY	2 cut(s)	17, 362
AfeI	AGCGCT	1 cut(s)	373
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	4 cut(s)	328, 359, 412, 475
AjnI	CCWGG	1 cut(s)	80
AluBI	AGCT	1 cut(s)	342
AluI	AGCT	1 cut(s)	342
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	451
Aor51HI	AGCGCT	1 cut(s)	373
AoxI	GGCC	1 cut(s)	83
ApoI	RAATTY	2 cut(s)	17, 362
Asp700I	GAANNNNTTC	1 cut(s)	431
AspLEI	GCGC	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	73
BalI	TGGCCA	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	36
BccI	CCATC	2 cut(s)	7, 140
BciT130I	CCWGG	1 cut(s)	82
BciVI	GTATCC	1 cut(s)	306
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	31
BfmI	CTRYAG	1 cut(s)	452
BfoI	RGCGCY	1 cut(s)	375
BfuI	GTATCC	1 cut(s)	306
Bme1390I	CCNGG	1 cut(s)	82
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	82
BmsI	GCATC	1 cut(s)	273
BsaXI	ACNNNNNCTCC	6 cut(s)	117, 147, 300, 305, 330, 335
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	82
BseGI	GGATG	2 cut(s)	187, 288
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	2 cut(s)	165, 326
BshFI	GGCC	1 cut(s)	85
BsiHKAI	GWGCWC	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	2 cut(s)	349, 456
BspACI	CCGC	2 cut(s)	51, 460
BspANI	GGCC	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	75
BspPI	GGATC	1 cut(s)	451
BsrI	ACTGG	1 cut(s)	388
BssMI	GATC	2 cut(s)	349, 456
Bst2UI	CCWGG	1 cut(s)	82
Bst4CI	ACNGT	1 cut(s)	139
BstDEI	CTNAG	1 cut(s)	368
BstF5I	GGATG	2 cut(s)	187, 288
BstH2I	RGCGCY	1 cut(s)	375
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	2 cut(s)	352, 459
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	2 cut(s)	349, 456
BstNI	CCWGG	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	80
BstSFI	CTRYAG	1 cut(s)	452
BstX2I	RGATCY	1 cut(s)	456
BstYI	RGATCY	1 cut(s)	456
BsuI	GTATCC	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	187, 288
BtsIMutI	CAGTG	3 cut(s)	144, 249, 299
CfoI	GCGC	1 cut(s)	374
Cfr13I	GGNCC	1 cut(s)	73
CviJI	RGCY	6 cut(s)	85, 97, 219, 232, 342, 469
CviKI_1	RGCY	6 cut(s)	85, 97, 219, 232, 342, 469
DdeI	CTNAG	1 cut(s)	368
DpnI	GATC	2 cut(s)	351, 458
DpnII	GATC	2 cut(s)	349, 456
EaeI	YGGCCR	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	73
Eco47III	AGCGCT	1 cut(s)	373
EcoRI	GAATTC	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	80
FaiI	YATR	7 cut(s)	23, 119, 201, 210, 401, 464, 490
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FbaI	TGATCA	1 cut(s)	349
FokI	GGATG	2 cut(s)	194, 295
GlaI	GCGC	1 cut(s)	373
HaeII	RGCGCY	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	85
HhaI	GCGC	1 cut(s)	374
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HindIII	AAGCTT	1 cut(s)	340
HinfI	GANTC	1 cut(s)	268
HphI	GGTGA	1 cut(s)	65
Hpy188III	TCNNGA	3 cut(s)	71, 328, 359
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	87
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	2 cut(s)	286, 488
HpyF3I	CTNAG	1 cut(s)	368
HspAI	GCGC	1 cut(s)	372
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	2 cut(s)	349, 456
LpnPI	CCDG	6 cut(s)	56, 67, 94, 201, 369, 464
LweI	GCATC	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	351, 458
MboI	GATC	2 cut(s)	349, 456
MflI	RGATCY	1 cut(s)	456
MhlI	GDGCHC	1 cut(s)	36
MlsI	TGGCCA	1 cut(s)	85
MluCI	AATT	3 cut(s)	17, 290, 362
MluNI	TGGCCA	1 cut(s)	85
Mox20I	TGGCCA	1 cut(s)	85
MroXI	GAANNNNTTC	1 cut(s)	431
MscI	TGGCCA	1 cut(s)	85
MseI	TTAA	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	85
MspR9I	CCNGG	1 cut(s)	82
MvaI	CCWGG	1 cut(s)	82
NdeII	GATC	2 cut(s)	349, 456
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	230
PdmI	GAANNNNTTC	1 cut(s)	431
PfeI	GAWTC	1 cut(s)	268
PflMI	CCANNNNNTGG	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	456
SaqAI	TTAA	1 cut(s)	420
Sau3AI	GATC	2 cut(s)	349, 456
Sau96I	GGNCC	1 cut(s)	73
ScrFI	CCNGG	1 cut(s)	82
SduI	GDGCHC	1 cut(s)	36
SfaNI	GCATC	1 cut(s)	273
SfcI	CTRYAG	1 cut(s)	452
SinI	GGWCC	1 cut(s)	73
Sse9I	AATT	3 cut(s)	17, 290, 362
SsiI	CCGC	2 cut(s)	51, 460
StyD4I	CCNGG	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	139
TaqI	TCGA	1 cut(s)	221
TasI	AATT	3 cut(s)	17, 290, 362
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	3 cut(s)	144, 256, 306
TseFI	GTSAC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	10
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	3 cut(s)	144, 256, 306
Van91I	CCANNNNNTGG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	73
XapI	RAATTY	2 cut(s)	17, 362
XmnI	GAANNNNTTC	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.