Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Reverse (-)

40156703 .. 40157417

Gene Structure 715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG207300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCTTGCTCGACATGGTGGTAATTATTCTGTGCTTGATGATAATGGAGAGGTAATGCAGGGCATTATTAATAACACTAAGCTCGCCAACGGTTTTGTTACCCTCGCTCGAGATCTTGAGCTCATGGAGGCCAAAACTCCACAGGATATATATACAAGGCACACTTGCTTGAGGGTCAATAGACATTGTGATATGACTCTGCTTTCTTGTGCTTATGCTGGAACAGGAGATGTTCTCAAGGTTCAAACCCTTTTCGGCCATTGTTCGCAACATGTTGAGGAGAAGGGTGAAACTCACCAGGGACCTGCTGTTCTTGGAATTGCTATGATAGGAATGGCTGAAGAATTGGGACTTAAAATGGCAATTCGTTCATTAGAGCAATTTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

129

Amino Acids

14.17

Weight (kDa)

5.81

Isoelectric Point (pI)

29.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN1_RPN2_N	PF17781	1 - 54	8.5e-10	RPN1 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	313
AcoI	YGGCCR	1 cut(s)	256
AcuI	CTGAAG	1 cut(s)	360
AflIII	ACRYGT	1 cut(s)	271
AgsI	TTSAA	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	297
AloI	GAACNNNNNNTCC	2 cut(s)	294, 326
AluBI	AGCT	2 cut(s)	82, 121
AluI	AGCT	2 cut(s)	82, 121
Alw21I	GWGCWC	1 cut(s)	123
Ama87I	CYCGRG	1 cut(s)	108
AoxI	GGCC	2 cut(s)	129, 256
AseI	ATTAAT	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	2 cut(s)	287, 299
AvaI	CYCGRG	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	123
BciT130I	CCWGG	1 cut(s)	299
BfmI	CTRYAG	1 cut(s)	386
BfuAI	ACCTGC	1 cut(s)	313
BglII	AGATCT	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	299
Bme18I	GGWCC	1 cut(s)	302
BmeT110I	CYCGRG	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	299
BplI	GAGNNNNNCTC	2 cut(s)	219, 251
BpuEI	CTTGAG	3 cut(s)	137, 190, 221
BsaJI	CCNNGG	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	298
BseRI	GAGGAG	1 cut(s)	293
BshFI	GGCC	2 cut(s)	131, 258
BsiHKAI	GWGCWC	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	108
BslFI	GGGAC	2 cut(s)	315, 363
BsmFI	GGGAC	2 cut(s)	315, 363
BsnI	GGCC	2 cut(s)	131, 258
BsoBI	CYCGRG	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	112
BspANI	GGCC	2 cut(s)	131, 258
BspLI	GGNNCC	1 cut(s)	303
BspMI	ACCTGC	1 cut(s)	313
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	6, 84
BstDEI	CTNAG	1 cut(s)	78
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstNI	CCWGG	1 cut(s)	299
BstNSI	RCATGY	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	297
BstSFI	CTRYAG	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	131, 258
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	6, 84
Cfr13I	GGNCC	1 cut(s)	302
CviAII	CATG	3 cut(s)	14, 124, 272
CviJI	RGCY	5 cut(s)	82, 121, 131, 258, 338
CviKI_1	RGCY	5 cut(s)	82, 121, 131, 258, 338
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	256
Ecl136II	GAGCTC	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	302
Eco53kI	GAGCTC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	360
Eco88I	CYCGRG	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	121
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	123
FaeI	CATG	3 cut(s)	17, 127, 275
FalI	AAGNNNNNCTT	2 cut(s)	148, 180
FaqI	GGGAC	2 cut(s)	315, 363
FatI	CATG	3 cut(s)	13, 123, 271
FriOI	GRGCYC	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	131, 258
Hin1II	CATG	3 cut(s)	17, 127, 275
HinfI	GANTC	1 cut(s)	196
HphI	GGTGA	2 cut(s)	287, 299
Hpy188III	TCNNGA	2 cut(s)	110, 116
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4V	TGCA	1 cut(s)	58
HpyF3I	CTNAG	1 cut(s)	78
Hsp92II	CATG	3 cut(s)	17, 127, 275
Kzo9I	GATC	1 cut(s)	112
LpnPI	CCDG	7 cut(s)	44, 128, 204, 210, 284, 311, 318
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	1 cut(s)	353
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	5 cut(s)	22, 318, 344, 363, 380
MlyI	GAGTC	1 cut(s)	190
MnlI	CCTC	5 cut(s)	43, 113, 121, 165, 271
MseI	TTAA	2 cut(s)	69, 354
MspR9I	CCNGG	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	299
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	3 cut(s)	17, 127, 275
NlaIV	GGNNCC	1 cut(s)	303
NspI	RCATGY	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	108
PciI	ACATGT	1 cut(s)	271
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PpuMI	RGGWCCY	1 cut(s)	302
PscI	ACATGT	1 cut(s)	271
PshBI	ATTAAT	1 cut(s)	69
Psp124BI	GAGCTC	1 cut(s)	123
Psp5II	RGGWCCY	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	302
PspPPI	RGGWCCY	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	112
SacI	GAGCTC	1 cut(s)	123
SaqAI	TTAA	2 cut(s)	69, 354
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	299
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	5 cut(s)	54, 84, 123, 243, 307
SfcI	CTRYAG	1 cut(s)	386
Sfr274I	CTCGAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	302
SlaI	CTCGAG	1 cut(s)	108
SmlI	CTYRAG	4 cut(s)	108, 116, 169, 236
SmoI	CTYRAG	4 cut(s)	108, 116, 169, 236
Sse9I	AATT	5 cut(s)	22, 318, 344, 363, 380
SstI	GAGCTC	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	92
TaqI	TCGA	2 cut(s)	10, 109
TasI	AATT	5 cut(s)	22, 318, 344, 363, 380
Tru1I	TTAA	2 cut(s)	69, 354
Tru9I	TTAA	2 cut(s)	69, 354
TspDTI	ATGAA	1 cut(s)	360
VpaK11BI	GGWCC	1 cut(s)	302
VspI	ATTAAT	1 cut(s)	69
XceI	RCATGY	1 cut(s)	275
XhoI	CTCGAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.