Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Forward (+)

19218993 .. 19221095

Gene Structure 2103 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27991.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGATATGCAATTTGTGGAACTTAGCTGGAGAAATTGCTCAAGAATATGCCAAGGCACAGTTGCAGAGTGATGAGACCCCGTTTGATGATCTAATGGAGCTAGTACAACAAATAGTTGCTTTTCACACGAGGCACAATGCCGAACCGGAAGCTGTTGACCTTTTAATGGAGGTTGAAGACCTTGATCTGTTAGTCGAGCATGTTGGTAAGACAAATTTTAAGAGGACTTGTCTTTACCTCATCAGTTTGGCAAGATTGGTTCCTGGACCGGATGATATGTTAGTCTTGGATATCGCATCCATGATAAATCTGAAATTTGAAGAATATCCAAATGCACTTCTGACTGCCCTTTTCCTTGACAATAAGGAGTATGTAAAGCAAGTCTTTACATCTTGTGATGATCTGCGTAAAAAGCAAATCTGTTACATCCTTGCCCAACATGGTAGTAATTTTGAGCTTAATGATGAGATGATGTCAGAAGATGACGAAAGAGAAGCAATGCATGACATTATTAATAACGCTAAACTCAGTGATGGTTATCTTACCCTTGCTTGTGATATTGAGGTCATGGAGGCCAAAACTCCAGAAGATATCTACAAAGTTTTGAACGTTTCATTTCATGTCATAGATCTGACACTTGATGCATATTTCAAAATTTGCTGTTGTGATGATATACCGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

228

Amino Acids

25.95

Weight (kDa)

4.3

Isoelectric Point (pI)

41.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN1_RPN2_N	PF17781	7 - 201	1.7e-60	RPN1 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	609
AcsI	RAATTY	3 cut(s)	214, 314, 654
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	4 cut(s)	176, 320, 607, 652
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	4 cut(s)	26, 100, 152, 457
AluI	AGCT	4 cut(s)	26, 100, 152, 457
Alw26I	GTCTC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	573
ApoI	RAATTY	3 cut(s)	214, 314, 654
AseI	ATTAAT	1 cut(s)	513
AspS9I	GGNCC	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	266
BauI	CACGAG	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	183
BccI	CCATC	1 cut(s)	527
BciT130I	CCWGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	68
BfaI	CTAG	1 cut(s)	101
BglII	AGATCT	1 cut(s)	628
Bme1390I	CCNGG	1 cut(s)	264
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	2 cut(s)	305, 631
BpiI	GAAGAC	1 cut(s)	183
BpmI	CTGGAG	2 cut(s)	48, 567
BpuEI	CTTGAG	1 cut(s)	24
BsaBI	GATNNNNATC	1 cut(s)	537
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	2 cut(s)	145, 268
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	504
Bse8I	GATNNNNATC	1 cut(s)	537
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	3 cut(s)	277, 296, 426
BseJI	GATNNNNATC	1 cut(s)	537
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	1 cut(s)	541
BshFI	GGCC	1 cut(s)	575
BsiSI	CCGG	2 cut(s)	146, 269
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	575
Bso31I	GGTCTC	1 cut(s)	68
Bsp143I	GATC	4 cut(s)	88, 184, 400, 628
BspANI	GGCC	1 cut(s)	575
BspCNI	CTCAG	1 cut(s)	540
BspLI	GGNNCC	1 cut(s)	261
BspTNI	GGTCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	504
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	4 cut(s)	88, 184, 400, 628
BssSI	CACGAG	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	51
Bst2BI	CACGAG	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	60, 678
BstDEI	CTNAG	2 cut(s)	22, 527
BstF5I	GGATG	3 cut(s)	277, 296, 426
BstKTI	GATC	4 cut(s)	91, 187, 403, 631
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	4 cut(s)	88, 184, 400, 628
BstMWI	GCNNNNNNNGC	1 cut(s)	412
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	262
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	628
BsuRI	GGCC	1 cut(s)	575
BtsCI	GGATG	3 cut(s)	277, 296, 426
BtsIMutI	CAGTG	1 cut(s)	535
Cfr13I	GGNCC	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	6 cut(s)	200, 301, 440, 503, 568, 620
CviJI	RGCY	5 cut(s)	26, 100, 152, 457, 575
CviKI_1	RGCY	5 cut(s)	26, 100, 152, 457, 575
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	2 cut(s)	22, 527
DpnI	GATC	4 cut(s)	90, 186, 402, 630
DpnII	GATC	4 cut(s)	88, 184, 400, 628
Eco130I	CCWWGG	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	68
Eco32I	GATATC	2 cut(s)	292, 592
Eco47I	GGWCC	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	262
EcoRV	GATATC	2 cut(s)	292, 592
EcoT14I	CCWWGG	1 cut(s)	51
EcoT22I	ATGCAT	2 cut(s)	504, 646
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	6 cut(s)	203, 304, 443, 506, 571, 623
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FatI	CATG	6 cut(s)	199, 300, 439, 502, 567, 619
FokI	GGATG	3 cut(s)	283, 284, 413
FspBI	CTAG	1 cut(s)	101
GsuI	CTGGAG	2 cut(s)	48, 567
HaeIII	GGCC	1 cut(s)	575
HapII	CCGG	2 cut(s)	146, 269
Hin1II	CATG	6 cut(s)	203, 304, 443, 506, 571, 623
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HpaII	CCGG	2 cut(s)	146, 269
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	4 cut(s)	312, 342, 478, 633
Hpy188III	TCNNGA	2 cut(s)	41, 584
Hpy8I	GTNNAC	1 cut(s)	157
HpyCH4III	ACNGT	2 cut(s)	60, 678
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	5 cut(s)	9, 64, 335, 502, 644
HpyF10VI	GCNNNNNNNGC	1 cut(s)	412
HpyF3I	CTNAG	2 cut(s)	22, 527
HpySE526I	ACGT	1 cut(s)	609
Hsp92II	CATG	6 cut(s)	203, 304, 443, 506, 571, 623
Kzo9I	GATC	4 cut(s)	88, 184, 400, 628
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	6 cut(s)	12, 159, 249, 276, 282, 597
LweI	GCATC	2 cut(s)	305, 631
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	1 cut(s)	609
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	4 cut(s)	90, 186, 402, 630
MboI	GATC	4 cut(s)	88, 184, 400, 628
MboII	GAAGA	4 cut(s)	188, 332, 491, 599
MflI	RGATCY	1 cut(s)	628
MluCI	AATT	6 cut(s)	10, 33, 214, 314, 448, 654
MnlI	CCTC	6 cut(s)	123, 163, 216, 248, 556, 565
Mph1103I	ATGCAT	2 cut(s)	504, 646
MseI	TTAA	4 cut(s)	164, 219, 459, 513
MspI	CCGG	2 cut(s)	146, 269
MspR9I	CCNGG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	412
NdeII	GATC	4 cut(s)	88, 184, 400, 628
NlaIII	CATG	6 cut(s)	203, 304, 443, 506, 571, 623
NlaIV	GGNNCC	1 cut(s)	261
NsiI	ATGCAT	2 cut(s)	504, 646
NspI	RCATGY	1 cut(s)	203
PfoI	TCCNGGA	1 cut(s)	262
PshBI	ATTAAT	1 cut(s)	513
Psp1406I	AACGTT	1 cut(s)	609
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	628
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SaqAI	TTAA	4 cut(s)	164, 219, 459, 513
Sau3AI	GATC	4 cut(s)	88, 184, 400, 628
Sau96I	GGNCC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	264
SfaNI	GCATC	2 cut(s)	305, 631
SinI	GGWCC	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	6 cut(s)	10, 33, 214, 314, 448, 654
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	262
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	60, 678
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	1 cut(s)	195
TasI	AATT	6 cut(s)	10, 33, 214, 314, 448, 654
TatI	WGTACW	1 cut(s)	103
Tru1I	TTAA	4 cut(s)	164, 219, 459, 513
Tru9I	TTAA	4 cut(s)	164, 219, 459, 513
TscAI	CASTG	1 cut(s)	535
TspDTI	ATGAA	2 cut(s)	603, 608
TspRI	CASTG	1 cut(s)	535
VpaK11BI	GGWCC	1 cut(s)	266
VspI	ATTAAT	1 cut(s)	513
XapI	RAATTY	3 cut(s)	214, 314, 654
XceI	RCATGY	1 cut(s)	203
XspI	CTAG	1 cut(s)	101
Zsp2I	ATGCAT	2 cut(s)	504, 646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.