Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Forward (+)

19453549 .. 19456778

Gene Structure 3230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g28290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGAGCGGAGCCACTACGAAGAAGTTCCGGGGCTTCGCAAGAACCGACCAACACCGCAAGCGGCAGCGGCAAGCACGATGAGCCCACCAAACCTCCGCCCCCAAAGGATTCCAAAAAGAAAGACGAGGATTTGGTATGCAATTCCATCTCTTAGGTCCGATGAAGATTTGGCCCTCAAGCAGCAATTATATCAAAGTCTTCGCCCGTATTACGGAGCTCTAAAAGCATACTATGAAACAATGATCGATTCAGATTTGAAGAAATACCTTGCGGATATACTGTCGGTTTTGGCACTGACCATGTCTGCTGAAGGAGAACGGAGTGATATGCAATTTGTGCACAATGCCGAACCGGAAGCTATTGACCTTTTAATGGAGACAAGCCCTTTCTTTTTGGGACTGGTACTGATAGCTTGTCCAAATGTCCAATGCCAAGTTGAAGACCTTGATCTGTTAGTCGAGCATGTTGATAGGACAAATTTTAAGAGGGCTTGTCTTTACCTCATCAGTTTGGCAAGATTGGTTCCTGGACCAGATGATATGTTTGATTTGGATATCGCATTCATGATAAATCTGAAATTTGAAGAATATCCAAATGCGCTTCTGATTGCCCTTTTCCTTGACAATAAGGAGGGTAGTAGTTTTGAGCTTAATGATGAGATGGTGTCAGAAGATGAAGAAAGAGAAGCAATGCAGGACATTATTAATAACGCTAAACTCAGTGAAGGTTATCTTACCCTTGCTCGTGATATTGTGGTCATGGAGGCCAAAACTCCAGAAGATATCTACAAGGTTTTGAACGTTTCATTTCATTTCATAGATTTGACACTTGATGCGTATTTCAAAATTTGCTGCTGTGATGATATACCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

292

Amino Acids

33.28

Weight (kDa)

4.61

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN1_RPN2_N	PF17781	67 - 112	1.3e-09	RPN1 N-terminal domain
RPN1_RPN2_N	PF17781	145 - 211	5.2e-14	RPN1 N-terminal domain
RPN1_RPN2_N	PF17781	222 - 265	1.7e-10	RPN1 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	7
AciI	CCGC	6 cut(s)	7, 56, 62, 68, 97, 272
AclI	AACGTT	1 cut(s)	801
AcsI	RAATTY	3 cut(s)	478, 578, 846
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	2 cut(s)	212, 373
AgsI	TTSAA	5 cut(s)	259, 440, 584, 799, 844
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	4 cut(s)	218, 359, 413, 649
AluI	AGCT	4 cut(s)	218, 359, 413, 649
Alw21I	GWGCWC	2 cut(s)	220, 342
Alw26I	GTCTC	1 cut(s)	371
Alw44I	GTGCAC	1 cut(s)	338
AoxI	GGCC	2 cut(s)	171, 765
ApaLI	GTGCAC	1 cut(s)	338
ApeKI	GCWGC	3 cut(s)	65, 181, 852
ApoI	RAATTY	3 cut(s)	478, 578, 846
AseI	ATTAAT	1 cut(s)	705
Asp700I	GAANNNNTTC	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	601
AspS9I	GGNCC	3 cut(s)	156, 172, 530
AsuC2I	CCSGG	1 cut(s)	30
AvaII	GGWCC	2 cut(s)	156, 530
BaeGI	GKGCMC	1 cut(s)	342
BanII	GRGCYC	2 cut(s)	86, 220
BauI	CACGAG	1 cut(s)	744
BbsI	GAAGAC	2 cut(s)	191, 447
Bbv12I	GWGCWC	2 cut(s)	220, 342
BbvI	GCAGC	3 cut(s)	77, 193, 839
BccI	CCATC	2 cut(s)	154, 655
BciT130I	CCWGG	1 cut(s)	528
BcnI	CCSGG	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	371
BisI	GCNGC	5 cut(s)	63, 66, 69, 182, 853
BlsI	GCNGC	5 cut(s)	64, 67, 70, 183, 854
Bme1390I	CCNGG	2 cut(s)	30, 528
Bme18I	GGWCC	2 cut(s)	156, 530
BmgT120I	GGNCC	3 cut(s)	156, 172, 530
BmiI	GGNNCC	2 cut(s)	11, 525
BmrFI	CCNGG	2 cut(s)	30, 528
BmsI	GCATC	1 cut(s)	823
BpiI	GAAGAC	2 cut(s)	191, 447
BpmI	CTGGAG	1 cut(s)	759
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	30
Bsa29I	ATCGAT	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	29
BsaWI	WCCGGW	1 cut(s)	352
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 373
Bse1I	ACTGG	1 cut(s)	405
Bse3DI	GCAATG	1 cut(s)	696
BseBI	CCWGG	1 cut(s)	528
BseCI	ATCGAT	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	29
BseLI	CCNNNNNNNGG	2 cut(s)	212, 373
BseMI	GCAATG	1 cut(s)	696
BseMII	CTCAG	1 cut(s)	733
BseNI	ACTGG	1 cut(s)	405
BseSI	GKGCMC	1 cut(s)	342
BseXI	GCAGC	3 cut(s)	77, 193, 839
BshFI	GGCC	2 cut(s)	173, 767
BshVI	ATCGAT	1 cut(s)	246
BsiHKAI	GWGCWC	2 cut(s)	220, 342
BsiSI	CCGG	2 cut(s)	29, 353
BslFI	GGGAC	1 cut(s)	411
BslI	CCNNNNNNNGG	2 cut(s)	212, 373
BsmAI	GTCTC	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	411
BsmI	GAATGC	1 cut(s)	560
BsnI	GGCC	2 cut(s)	173, 767
Bsp1286I	GDGCHC	3 cut(s)	86, 220, 342
Bsp143I	GATC	2 cut(s)	243, 448
BspACI	CCGC	6 cut(s)	7, 56, 62, 68, 97, 272
BspANI	GGCC	2 cut(s)	173, 767
BspCNI	CTCAG	1 cut(s)	732
BspDI	ATCGAT	1 cut(s)	246
BspHI	TCATGA	1 cut(s)	564
BspLI	GGNNCC	2 cut(s)	11, 525
BsrBI	CCGCTC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	696
BsrI	ACTGG	1 cut(s)	405
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	2 cut(s)	243, 448
BssSI	CACGAG	1 cut(s)	744
Bst2BI	CACGAG	1 cut(s)	744
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	1 cut(s)	282
BstAPI	GCANNNNNTGC	1 cut(s)	337
BstC8I	GCNNGC	2 cut(s)	60, 73
BstDEI	CTNAG	2 cut(s)	152, 719
BstHHI	GCGC	1 cut(s)	601
BstKTI	GATC	2 cut(s)	246, 451
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	2 cut(s)	243, 448
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 81, 224, 337
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	1 cut(s)	467
BstSCI	CCNGG	2 cut(s)	28, 526
BstSLI	GKGCMC	1 cut(s)	342
BstV1I	GCAGC	3 cut(s)	77, 193, 839
BstV2I	GAAGAC	2 cut(s)	191, 447
Bsu15I	ATCGAT	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	173, 767
BsuTUI	ATCGAT	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	293, 727
Cac8I	GCNNGC	2 cut(s)	60, 73
CciI	TCATGA	1 cut(s)	564
CfoI	GCGC	1 cut(s)	601
Cfr13I	GGNCC	3 cut(s)	156, 172, 530
ClaI	ATCGAT	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	4 cut(s)	301, 464, 565, 760
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	2 cut(s)	152, 719
DpnI	GATC	2 cut(s)	245, 450
DpnII	GATC	2 cut(s)	243, 448
EciI	GGCGGA	1 cut(s)	86
Ecl136II	GAGCTC	1 cut(s)	218
Eco24I	GRGCYC	2 cut(s)	86, 220
Eco32I	GATATC	2 cut(s)	556, 784
Eco47I	GGWCC	2 cut(s)	156, 530
Eco53kI	GAGCTC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	526
EcoRV	GATATC	2 cut(s)	556, 784
EcoT38I	GRGCYC	2 cut(s)	86, 220
FaeI	CATG	4 cut(s)	304, 467, 568, 763
FalI	AAGNNNNNCTT	2 cut(s)	717, 749
FaqI	GGGAC	1 cut(s)	411
FatI	CATG	4 cut(s)	300, 463, 564, 759
Fnu4HI	GCNGC	5 cut(s)	63, 66, 69, 182, 853
FriOI	GRGCYC	2 cut(s)	86, 220
Fsp4HI	GCNGC	5 cut(s)	63, 66, 69, 182, 853
GlaI	GCGC	1 cut(s)	600
GluI	GCNGC	5 cut(s)	63, 66, 69, 182, 853
GsuI	CTGGAG	1 cut(s)	759
HaeIII	GGCC	2 cut(s)	173, 767
HapII	CCGG	2 cut(s)	29, 353
HhaI	GCGC	1 cut(s)	601
Hin1II	CATG	4 cut(s)	304, 467, 568, 763
Hin6I	GCGC	1 cut(s)	599
HinP1I	GCGC	1 cut(s)	599
HinfI	GANTC	2 cut(s)	109, 248
HpaII	CCGG	2 cut(s)	29, 353
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	5 cut(s)	160, 253, 576, 606, 670
Hpy188III	TCNNGA	3 cut(s)	565, 746, 776
Hpy8I	GTNNAC	1 cut(s)	340
HpyAV	CCTTC	2 cut(s)	305, 719
HpyCH4III	ACNGT	1 cut(s)	282
HpyCH4IV	ACGT	1 cut(s)	801
HpyCH4V	TGCA	4 cut(s)	140, 331, 340, 694
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 81, 224, 337
HpyF3I	CTNAG	2 cut(s)	152, 719
HpySE526I	ACGT	1 cut(s)	801
Hsp92II	CATG	4 cut(s)	304, 467, 568, 763
HspAI	GCGC	1 cut(s)	599
Kzo9I	GATC	2 cut(s)	243, 448
LmnI	GCTCC	3 cut(s)	4, 9, 215
LpnPI	CCDG	8 cut(s)	42, 366, 386, 513, 540, 546, 680, 789
Lsp1109I	GCAGC	3 cut(s)	77, 193, 839
LweI	GCATC	1 cut(s)	823
MaeII	ACGT	1 cut(s)	801
MalI	GATC	2 cut(s)	245, 450
MbiI	CCGCTC	1 cut(s)	7
MboI	GATC	2 cut(s)	243, 448
MboII	GAAGA	9 cut(s)	32, 176, 191, 271, 452, 596, 683, 689, 791
MhlI	GDGCHC	3 cut(s)	86, 220, 342
MluCI	AATT	6 cut(s)	141, 185, 332, 478, 578, 846
MnlI	CCTC	7 cut(s)	104, 120, 185, 480, 512, 625, 757
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	4 cut(s)	371, 483, 651, 705
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	2 cut(s)	29, 353
MspR9I	CCNGG	2 cut(s)	30, 528
Mva1269I	GAATGC	1 cut(s)	560
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	4 cut(s)	68, 81, 224, 337
NciI	CCSGG	1 cut(s)	30
NdeII	GATC	2 cut(s)	243, 448
NlaIII	CATG	4 cut(s)	304, 467, 568, 763
NlaIV	GGNNCC	2 cut(s)	11, 525
NspI	RCATGY	1 cut(s)	467
PagI	TCATGA	1 cut(s)	564
PcsI	WCGNNNNNNNCGW	1 cut(s)	43
PctI	GAATGC	1 cut(s)	560
PdmI	GAANNNNTTC	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	109, 248
PflFI	GACNNNGTC	1 cut(s)	301
PfoI	TCCNGGA	1 cut(s)	526
PkrI	GCNGC	5 cut(s)	64, 67, 70, 183, 854
PshBI	ATTAAT	1 cut(s)	705
Psp124BI	GAGCTC	1 cut(s)	220
Psp1406I	AACGTT	1 cut(s)	801
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	2 cut(s)	11, 525
PspPI	GGNCC	3 cut(s)	156, 172, 530
PsyI	GACNNNGTC	1 cut(s)	301
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
SacI	GAGCTC	1 cut(s)	220
SaqAI	TTAA	4 cut(s)	371, 483, 651, 705
SatI	GCNGC	5 cut(s)	63, 66, 69, 182, 853
Sau3AI	GATC	2 cut(s)	243, 448
Sau96I	GGNCC	3 cut(s)	156, 172, 530
ScrFI	CCNGG	2 cut(s)	30, 528
SduI	GDGCHC	3 cut(s)	86, 220, 342
SfaNI	GCATC	1 cut(s)	823
SinI	GGWCC	2 cut(s)	156, 530
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	6 cut(s)	141, 185, 332, 478, 578, 846
SsiI	CCGC	6 cut(s)	7, 56, 62, 68, 97, 272
SstI	GAGCTC	1 cut(s)	220
StyD4I	CCNGG	2 cut(s)	28, 526
TaaI	ACNGT	1 cut(s)	282
TaiI	ACGT	1 cut(s)	804
TaqI	TCGA	2 cut(s)	246, 459
TasI	AATT	6 cut(s)	141, 185, 332, 478, 578, 846
TauI	GCSGC	2 cut(s)	65, 71
TfiI	GAWTC	2 cut(s)	109, 248
Tru1I	TTAA	4 cut(s)	371, 483, 651, 705
Tru9I	TTAA	4 cut(s)	371, 483, 651, 705
TscAI	CASTG	2 cut(s)	300, 727
TseI	GCWGC	3 cut(s)	65, 181, 852
TspDTI	ATGAA	7 cut(s)	177, 249, 553, 690, 795, 800, 805
TspGWI	ACGGA	2 cut(s)	228, 334
TspRI	CASTG	2 cut(s)	300, 727
Tth111I	GACNNNGTC	1 cut(s)	301
VneI	GTGCAC	1 cut(s)	338
VpaK11BI	GGWCC	2 cut(s)	156, 530
VspI	ATTAAT	1 cut(s)	705
XapI	RAATTY	3 cut(s)	478, 578, 846
XceI	RCATGY	1 cut(s)	467
XmnI	GAANNNNTTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.