Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Forward (+)

11219319 .. 11219621

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG073900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGTTCTCAAGGTTCAAAACCTTCCTGGCCATTGTTCACAAACATCTTGAGAAGGGTGAAACATACCAGGGCCCTGCAGTGCTTGGTATTGCGATGATAGCAATGGCTGAAGAGTTGGGACTTGAAATGGCAATTCGTTCATTGGAGCATCTTCTACAGTATGGAGAACCCTGTCAGGCAGTTCCTCTCCTTTGCATATCAAATCCCAAGGTATTAAGCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

74

Amino Acids

8.19

Weight (kDa)

6.25

Isoelectric Point (pI)

33.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	129
AgsI	TTSAA	2 cut(s)	16, 125
AjnI	CCWGG	2 cut(s)	24, 66
AluBI	AGCT	1 cut(s)	219
AluI	AGCT	1 cut(s)	219
AoxI	GGCC	2 cut(s)	27, 70
ApaI	GGGCCC	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	70, 71
AsuHPI	GGTGA	1 cut(s)	68
BaeGI	GKGCMC	1 cut(s)	74
BalI	TGGCCA	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	74
BciT130I	CCWGG	2 cut(s)	26, 68
BfmI	CTRYAG	2 cut(s)	75, 155
Bme1390I	CCNGG	2 cut(s)	26, 68
BmgT120I	GGNCC	2 cut(s)	70, 71
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	2 cut(s)	26, 68
BmsI	GCATC	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	67, 207
Bse3DI	GCAATG	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	26, 68
BseDI	CCNNGG	2 cut(s)	67, 207
BseMI	GCAATG	1 cut(s)	108
BseSI	GKGCMC	1 cut(s)	74
BshFI	GGCC	2 cut(s)	29, 72
BslFI	GGGAC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	132
BsnI	GGCC	2 cut(s)	29, 72
Bsp120I	GGGCCC	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	74
BspANI	GGCC	2 cut(s)	29, 72
BspLI	GGNNCC	1 cut(s)	72
BspMAI	CTGCAG	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	108
BssECI	CCNNGG	2 cut(s)	67, 207
BssT1I	CCWWGG	1 cut(s)	207
Bst2UI	CCWGG	2 cut(s)	26, 68
Bst4CI	ACNGT	1 cut(s)	159
Bst6I	CTCTTC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	2 cut(s)	26, 68
BstSCI	CCNGG	2 cut(s)	24, 66
BstSFI	CTRYAG	2 cut(s)	75, 155
BstSLI	GKGCMC	1 cut(s)	74
BsuRI	GGCC	2 cut(s)	29, 72
BtgZI	GCGATG	1 cut(s)	107
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	84
Cfr13I	GGNCC	2 cut(s)	70, 71
CviJI	RGCY	4 cut(s)	29, 72, 107, 219
CviKI_1	RGCY	4 cut(s)	29, 72, 107, 219
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	207
Eco24I	GRGCYC	1 cut(s)	74
Eco57I	CTGAAG	1 cut(s)	129
EcoO109I	RGGNCCY	2 cut(s)	70, 71
EcoRII	CCWGG	2 cut(s)	24, 66
EcoT14I	CCWWGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	207
FaiI	YATR	3 cut(s)	64, 162, 197
FaqI	GGGAC	1 cut(s)	132
FriOI	GRGCYC	1 cut(s)	74
HaeIII	GGCC	2 cut(s)	29, 72
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	37
HpyAV	CCTTC	2 cut(s)	31, 46
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4V	TGCA	2 cut(s)	77, 195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	7 cut(s)	11, 38, 53, 80, 87, 161, 184
LweI	GCATC	1 cut(s)	157
MboII	GAAGA	2 cut(s)	122, 143
MhlI	GDGCHC	1 cut(s)	74
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	1 cut(s)	132
MluNI	TGGCCA	1 cut(s)	29
MnlI	CCTC	1 cut(s)	195
Mox20I	TGGCCA	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	29
MseI	TTAA	1 cut(s)	215
Msp20I	TGGCCA	1 cut(s)	29
MspR9I	CCNGG	2 cut(s)	26, 68
MvaI	CCWGG	2 cut(s)	26, 68
MwoI	GCNNNNNNNGC	1 cut(s)	98
NlaIV	GGNNCC	1 cut(s)	72
Psp6I	CCWGG	2 cut(s)	24, 66
PspGI	CCWGG	2 cut(s)	24, 66
PspN4I	GGNNCC	1 cut(s)	72
PspOMI	GGGCCC	1 cut(s)	70
PspPI	GGNCC	2 cut(s)	70, 71
PstI	CTGCAG	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	215
Sau96I	GGNCC	2 cut(s)	70, 71
ScrFI	CCNGG	2 cut(s)	26, 68
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	4 cut(s)	14, 23, 213, 221
SfaNI	GCATC	1 cut(s)	157
SfcI	CTRYAG	2 cut(s)	75, 155
SmlI	CTYRAG	2 cut(s)	7, 47
SmoI	CTYRAG	2 cut(s)	7, 47
Sse9I	AATT	1 cut(s)	132
StyD4I	CCNGG	2 cut(s)	24, 66
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	159
TasI	AATT	1 cut(s)	132
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	1 cut(s)	84
TspDTI	ATGAA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.