Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Forward (+)

11378891 .. 11380738

Gene Structure 1848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22958

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGCACTGTTCCTCACTAGATCCCTTCTCTGATCACCATAGTGTTGTTGGTATTTTTGTGAAGGCACACTTACTTGATGGCCGGGCAAGTGCTGGTGCTAGTGTTGATTCAGCCAGACAGAACTTAGCTGCTACGTTTGTTAATGCATTTGTCAATGCTGGCTTTGGTCAGGATAAGTTGATGACTGTCCCATCAGATGCCTCAAGTGGTGGTGCATCAGGAAACTGGCTTTTCAAGAATAAGGAGCATGGGAAGACCAGTGCTGCAGCAAGTCTGGGTACAATTTTACTGTGGGATGTTGACCCCGGGCTGGCTCAAATTGACAAGTACTTCCACAGCAATGACAACCATGTCATTGCTGGTGCGTTGTTAGGGGTTGGGACTGTCAATTACAGTATAAAAAATGATTGTGATCCAATACGTAGTAAGCTGACTCCTATACTAAATGACGCCAAAGCTCCCCTTGATGTTATCACATTCGCTGCAATCTCCTTGGGGTTGATATATGTTGGTTCTTGCAATGAGGAGGTGGCTCAGGCAATCATATTTGCACTAATGGACAGAAGTGACGCTGAGTTGGGGGAGCCCCTTGCTCGCCTAATACCCCTCAGCCTAGGTCTTCTGTATCTTGGGAAGCAGGAAAGTGTTGAGGCCACTGCTGAAGTTTCAAAGACATTTCATGAAAAAATCAGAAAACATTGTGATATGACTCTGCTTTCTTGTGCTTATGCGGGAACAGGAAATGTTCTCAAGGGTGAAACATACCAGGGCCCTGCAGTGCTTGGTATTGCGATGATAGCAATGGCTGAAGAGTTGGGACTTGAAATGGCAATTCGTTCATTTGGAGCATCTTCTACAGTATGGAGAACCCTATCGGGCAGTTCCTTTGGATCTTGGTCTCCTCTGCATATCAAATCCAAAGGTATTAATCTGTTAGGTCAAGCTGACCATCTTGGCTTATATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

322

Amino Acids

34.06

Weight (kDa)

5.74

Isoelectric Point (pI)

29.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	350
AciI	CCGC	1 cut(s)	731
AclWI	GGATC	3 cut(s)	14, 407, 898
AcoI	YGGCCR	1 cut(s)	79
AcuI	CTGAAG	2 cut(s)	681, 828
AcyI	GRCGYC	1 cut(s)	450
AfaI	GTAC	2 cut(s)	280, 329
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgsI	TTSAA	3 cut(s)	235, 669, 824
AjnI	CCWGG	1 cut(s)	765
AleI	CACNNNNGTG	1 cut(s)	39
AluBI	AGCT	4 cut(s)	128, 430, 458, 944
AluI	AGCT	4 cut(s)	128, 430, 458, 944
Alw26I	GTCTC	1 cut(s)	903
AlwI	GGATC	3 cut(s)	14, 407, 898
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	3 cut(s)	79, 651, 769
ApaI	GGGCCC	1 cut(s)	773
ApeKI	GCWGC	4 cut(s)	128, 263, 266, 482
AseI	ATTAAT	1 cut(s)	927
AspA2I	CCTAGG	1 cut(s)	613
AspS9I	GGNCC	2 cut(s)	769, 770
AsuC2I	CCSGG	3 cut(s)	83, 306, 307
AsuHPI	GGTGA	2 cut(s)	26, 767
AvaI	CYCGRG	1 cut(s)	305
AvrII	CCTAGG	1 cut(s)	613
BaeGI	GKGCMC	1 cut(s)	773
BanII	GRGCYC	2 cut(s)	588, 773
BbsI	GAAGAC	2 cut(s)	260, 611
BbvCI	CCTCAGC	1 cut(s)	608
BbvI	GCAGC	4 cut(s)	115, 250, 278, 469
BccI	CCATC	3 cut(s)	71, 199, 957
BciT130I	CCWGG	1 cut(s)	767
BclI	TGATCA	1 cut(s)	31
BcnI	CCSGG	3 cut(s)	83, 306, 307
BcoDI	GTCTC	1 cut(s)	903
BfaI	CTAG	3 cut(s)	17, 99, 614
BfmI	CTRYAG	3 cut(s)	264, 774, 855
BisI	GCNGC	4 cut(s)	129, 264, 267, 483
BlnI	CCTAGG	1 cut(s)	613
BlsI	GCNGC	4 cut(s)	130, 265, 268, 484
BmcAI	AGTACT	1 cut(s)	329
Bme1390I	CCNGG	4 cut(s)	83, 306, 307, 767
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	2 cut(s)	769, 770
BmiI	GGNNCC	2 cut(s)	585, 771
BmrFI	CCNGG	4 cut(s)	83, 306, 307, 767
BmsI	GCATC	3 cut(s)	187, 224, 857
BpiI	GAAGAC	2 cut(s)	260, 611
Bpu10I	CCTNAGC	2 cut(s)	534, 608
BpuEI	CTTGAG	2 cut(s)	187, 734
BpuMI	CCSGG	3 cut(s)	83, 306, 307
BsaAI	YACGTR	1 cut(s)	422
BsaBI	GATNNNNATC	1 cut(s)	411
BsaHI	GRCGYC	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	903
BsaJI	CCNNGG	5 cut(s)	304, 305, 492, 613, 766
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse1I	ACTGG	2 cut(s)	230, 258
Bse3DI	GCAATG	4 cut(s)	346, 354, 526, 807
Bse8I	GATNNNNATC	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	767
BseDI	CCNNGG	5 cut(s)	304, 305, 492, 613, 766
BseGI	GGATG	1 cut(s)	301
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMI	GCAATG	4 cut(s)	346, 354, 526, 807
BseMII	CTCAG	3 cut(s)	548, 564, 622
BseNI	ACTGG	2 cut(s)	230, 258
BseRI	GAGGAG	2 cut(s)	539, 891
BseSI	GKGCMC	1 cut(s)	773
BseXI	GCAGC	4 cut(s)	115, 250, 278, 469
BshFI	GGCC	3 cut(s)	81, 653, 771
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	2 cut(s)	82, 306
BslFI	GGGAC	3 cut(s)	173, 394, 831
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	1 cut(s)	903
BsmFI	GGGAC	3 cut(s)	173, 394, 831
BsnI	GGCC	3 cut(s)	81, 653, 771
Bso31I	GGTCTC	1 cut(s)	903
BsoBI	CYCGRG	1 cut(s)	305
Bsp120I	GGGCCC	1 cut(s)	769
Bsp1286I	GDGCHC	2 cut(s)	588, 773
Bsp143I	GATC	4 cut(s)	19, 31, 412, 890
BspACI	CCGC	1 cut(s)	731
BspANI	GGCC	3 cut(s)	81, 653, 771
BspCNI	CTCAG	3 cut(s)	547, 565, 621
BspHI	TCATGA	1 cut(s)	679
BspLI	GGNNCC	2 cut(s)	585, 771
BspMAI	CTGCAG	2 cut(s)	268, 778
BspPI	GGATC	3 cut(s)	14, 407, 898
BspTNI	GGTCTC	1 cut(s)	903
BsrDI	GCAATG	4 cut(s)	346, 354, 526, 807
BsrI	ACTGG	2 cut(s)	230, 258
BssECI	CCNNGG	5 cut(s)	304, 305, 492, 613, 766
BssMI	GATC	4 cut(s)	19, 31, 412, 890
BssNI	GRCGYC	1 cut(s)	450
BssT1I	CCWWGG	2 cut(s)	492, 613
Bst2UI	CCWGG	1 cut(s)	767
Bst4CI	ACNGT	6 cut(s)	8, 187, 291, 385, 395, 859
Bst6I	CTCTTC	1 cut(s)	804
BstACI	GRCGYC	1 cut(s)	450
BstBAI	YACGTR	1 cut(s)	422
BstC8I	GCNNGC	3 cut(s)	160, 312, 595
BstDEI	CTNAG	4 cut(s)	124, 534, 573, 608
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	4 cut(s)	22, 34, 415, 893
BstMAI	GTCTC	1 cut(s)	903
BstMBI	GATC	4 cut(s)	19, 31, 412, 890
BstMWI	GCNNNNNNNGC	1 cut(s)	797
BstNI	CCWGG	1 cut(s)	767
BstSCI	CCNGG	4 cut(s)	81, 304, 305, 765
BstSFI	CTRYAG	3 cut(s)	264, 774, 855
BstSLI	GKGCMC	1 cut(s)	773
BstSNI	TACGTA	1 cut(s)	422
BstV1I	GCAGC	4 cut(s)	115, 250, 278, 469
BstV2I	GAAGAC	2 cut(s)	260, 611
BstX2I	RGATCY	2 cut(s)	19, 890
BstYI	RGATCY	2 cut(s)	19, 890
BsuRI	GGCC	3 cut(s)	81, 653, 771
BtgZI	GCGATG	1 cut(s)	806
BtsCI	GGATG	1 cut(s)	301
BtsI	GCAGTG	2 cut(s)	654, 783
BtsIMutI	CAGTG	4 cut(s)	4, 265, 654, 783
Cac8I	GCNNGC	3 cut(s)	160, 312, 595
CciI	TCATGA	1 cut(s)	679
Cfr13I	GGNCC	2 cut(s)	769, 770
Cfr9I	CCCGGG	1 cut(s)	305
CseI	GACGC	2 cut(s)	458, 578
Csp6I	GTAC	2 cut(s)	279, 328
CviAII	CATG	3 cut(s)	248, 350, 680
CviQI	GTAC	2 cut(s)	279, 328
DdeI	CTNAG	4 cut(s)	124, 534, 573, 608
DpnI	GATC	4 cut(s)	21, 33, 414, 892
DpnII	GATC	4 cut(s)	19, 31, 412, 890
DrdI	GACNNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	350
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	804
EarI	CTCTTC	1 cut(s)	804
Eco105I	TACGTA	1 cut(s)	422
Eco130I	CCWWGG	2 cut(s)	492, 613
Eco24I	GRGCYC	2 cut(s)	588, 773
Eco31I	GGTCTC	1 cut(s)	903
Eco57I	CTGAAG	2 cut(s)	681, 828
Eco88I	CYCGRG	1 cut(s)	305
EcoO109I	RGGNCCY	2 cut(s)	769, 770
EcoRII	CCWGG	1 cut(s)	765
EcoT14I	CCWWGG	2 cut(s)	492, 613
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	2 cut(s)	588, 773
ErhI	CCWWGG	2 cut(s)	492, 613
FaeI	CATG	3 cut(s)	251, 353, 683
FalI	AAGNNNNNCTT	4 cut(s)	53, 85, 447, 479
FaqI	GGGAC	3 cut(s)	173, 394, 831
FatI	CATG	3 cut(s)	247, 349, 679
FauI	CCCGC	1 cut(s)	724
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	4 cut(s)	129, 264, 267, 483
FokI	GGATG	1 cut(s)	308
FriOI	GRGCYC	2 cut(s)	588, 773
Fsp4HI	GCNGC	4 cut(s)	129, 264, 267, 483
FspBI	CTAG	3 cut(s)	17, 99, 614
GluI	GCNGC	4 cut(s)	129, 264, 267, 483
HaeIII	GGCC	3 cut(s)	81, 653, 771
HapII	CCGG	2 cut(s)	82, 306
HgaI	GACGC	2 cut(s)	458, 578
Hin1I	GRCGYC	1 cut(s)	450
Hin1II	CATG	3 cut(s)	251, 353, 683
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	3 cut(s)	107, 433, 709
HpaII	CCGG	2 cut(s)	82, 306
HphI	GGTGA	2 cut(s)	26, 767
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	3 cut(s)	31, 196, 692
Hpy188III	TCNNGA	4 cut(s)	170, 219, 235, 680
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	2 cut(s)	34, 55
HpyCH4III	ACNGT	6 cut(s)	8, 187, 291, 385, 395, 859
HpyCH4IV	ACGT	2 cut(s)	134, 421
HpyCH4V	TGCA	9 cut(s)	4, 146, 215, 266, 485, 519, 551, 776, 907
HpyF10VI	GCNNNNNNNGC	1 cut(s)	797
HpyF3I	CTNAG	4 cut(s)	124, 534, 573, 608
HpySE526I	ACGT	2 cut(s)	134, 421
Hsp92I	GRCGYC	1 cut(s)	450
Hsp92II	CATG	3 cut(s)	251, 353, 683
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	4 cut(s)	19, 31, 412, 890
LmnI	GCTCC	4 cut(s)	244, 463, 583, 845
Lsp1109I	GCAGC	4 cut(s)	115, 250, 278, 469
LweI	GCATC	3 cut(s)	187, 224, 857
MaeI	CTAG	3 cut(s)	17, 99, 614
MaeII	ACGT	2 cut(s)	134, 421
MaeIII	GTNAC	1 cut(s)	566
MalI	GATC	4 cut(s)	21, 33, 414, 892
MboI	GATC	4 cut(s)	19, 31, 412, 890
MboII	GAAGA	4 cut(s)	265, 611, 821, 843
MflI	RGATCY	2 cut(s)	19, 890
MhlI	GDGCHC	2 cut(s)	588, 773
MluCI	AATT	4 cut(s)	282, 318, 388, 831
MlyI	GAGTC	2 cut(s)	427, 703
MnlI	CCTC	7 cut(s)	22, 211, 517, 520, 617, 643, 912
Mph1103I	ATGCAT	1 cut(s)	148
MseI	TTAA	2 cut(s)	141, 927
MslI	CAYNNNNRTG	2 cut(s)	39, 339
MspI	CCGG	2 cut(s)	82, 306
MspR9I	CCNGG	4 cut(s)	83, 306, 307, 767
MvaI	CCWGG	1 cut(s)	767
MwoI	GCNNNNNNNGC	1 cut(s)	797
NciI	CCSGG	3 cut(s)	83, 306, 307
NdeII	GATC	4 cut(s)	19, 31, 412, 890
NlaIII	CATG	3 cut(s)	251, 353, 683
NlaIV	GGNNCC	2 cut(s)	585, 771
NmuCI	GTSAC	1 cut(s)	566
NsiI	ATGCAT	1 cut(s)	148
OliI	CACNNNNGTG	1 cut(s)	39
PagI	TCATGA	1 cut(s)	679
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	4 cut(s)	130, 265, 268, 484
PleI	GAGTC	2 cut(s)	427, 703
PpsI	GAGTC	2 cut(s)	427, 703
Ppu21I	YACGTR	1 cut(s)	422
PshBI	ATTAAT	1 cut(s)	927
Psp6I	CCWGG	1 cut(s)	765
PspGI	CCWGG	1 cut(s)	765
PspN4I	GGNNCC	2 cut(s)	585, 771
PspOMI	GGGCCC	1 cut(s)	769
PspPI	GGNCC	2 cut(s)	769, 770
PstI	CTGCAG	2 cut(s)	268, 778
PsuI	RGATCY	2 cut(s)	19, 890
RsaI	GTAC	2 cut(s)	280, 329
RsaNI	GTAC	2 cut(s)	279, 328
RseI	CAYNNNNRTG	2 cut(s)	39, 339
SaqAI	TTAA	2 cut(s)	141, 927
SatI	GCNGC	4 cut(s)	129, 264, 267, 483
Sau3AI	GATC	4 cut(s)	19, 31, 412, 890
Sau96I	GGNCC	2 cut(s)	769, 770
ScaI	AGTACT	1 cut(s)	329
SchI	GAGTC	2 cut(s)	427, 703
ScrFI	CCNGG	4 cut(s)	83, 306, 307, 767
SduI	GDGCHC	2 cut(s)	588, 773
SfaNI	GCATC	3 cut(s)	187, 224, 857
SfcI	CTRYAG	3 cut(s)	264, 774, 855
SmaI	CCCGGG	1 cut(s)	307
SmiMI	CAYNNNNRTG	2 cut(s)	39, 339
SmlI	CTYRAG	2 cut(s)	202, 749
SmoI	CTYRAG	2 cut(s)	202, 749
SnaBI	TACGTA	1 cut(s)	422
Sse9I	AATT	4 cut(s)	282, 318, 388, 831
SsiI	CCGC	1 cut(s)	731
SspMI	CTAG	3 cut(s)	17, 99, 614
StyD4I	CCNGG	4 cut(s)	81, 304, 305, 765
StyI	CCWWGG	2 cut(s)	492, 613
TaaI	ACNGT	6 cut(s)	8, 187, 291, 385, 395, 859
TaiI	ACGT	2 cut(s)	137, 424
TasI	AATT	4 cut(s)	282, 318, 388, 831
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	2 cut(s)	141, 927
Tru9I	TTAA	2 cut(s)	141, 927
TscAI	CASTG	3 cut(s)	265, 661, 783
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	4 cut(s)	128, 263, 266, 482
Tsp45I	GTSAC	1 cut(s)	566
TspDTI	ATGAA	3 cut(s)	668, 696, 828
TspMI	CCCGGG	1 cut(s)	305
TspRI	CASTG	3 cut(s)	265, 661, 783
VspI	ATTAAT	1 cut(s)	927
XcmI	CCANNNNNNNNNTGG	2 cut(s)	44, 356
XmaI	CCCGGG	1 cut(s)	305
XmaJI	CCTAGG	1 cut(s)	613
XspI	CTAG	3 cut(s)	17, 99, 614
ZrmI	AGTACT	1 cut(s)	329
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.