Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Reverse (-)

10727708 .. 10742103

Gene Structure 14396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g12230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCGGTGCTCAATGGGGCAGAGCTGGGCGGCCCCGGACGTGTGGGGATGGACCTGGGACGGCATCCGGCGCTGGAGAAAGAGAGCATCGTCGTCGACCAACACCGCAAGCGGGCAAGAACCGACCAACACCGCAAGCGGGCAAGAACCGACCAACACCGCAAGCGGCAGCGGCAAGCACGATGAGCCCACCAAACCTCCGCCCCCAAAGGATTCGAAAAAGAAAGATGACAAGAAAGACGAGGATTTGTCCGATGAAGATTTGGCCCTCAAGCAGCAATTAGAATTGTACGCGGAGAGGGTTCAAGATTCTGATCCTGGACTACAGAAAGTTGCGCTAGAGTACCAAAGCCGTTACGGAACTCTAAAAGCATACTATGAAACAATGACCGATTCAGATTTGAAGATATACCTTGCGGATATATTGTCGGTTTTGGCACTGACCATGTCTGCTGAAGGAGAACGGGAAAGCTTAAAGTTTAGACGGAACTTAGCTGGAGAAATTGCTCAAGAATATGCCAAGCGACAGTTGCAGAGTGATGAGACCCCGTTTGATGATCTAATGGAGCTAGTACAACAAATAGTTGCTTTTCACACGAGGGTTGTGCTTGTCTGTTCAATTGTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

210

Amino Acids

23.57

Weight (kDa)

5.02

Isoelectric Point (pI)

47.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN1_RPN2_N	PF17781	117 - 199	4.3e-14	RPN1 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	95
AccII	CGCG	1 cut(s)	293
AclWI	GGATC	1 cut(s)	308
AcuI	CTGAAG	1 cut(s)	474
AfaI	GTAC	3 cut(s)	290, 344, 573
AfiI	CCNNNNNNNGG	2 cut(s)	111, 138
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	3 cut(s)	305, 403, 618
AjiI	CACGTC	1 cut(s)	40
AjnI	CCWGG	2 cut(s)	53, 316
AluBI	AGCT	4 cut(s)	24, 471, 494, 568
AluI	AGCT	4 cut(s)	24, 471, 494, 568
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	536
AlwI	GGATC	1 cut(s)	308
AoxI	GGCC	2 cut(s)	30, 264
ApeKI	GCWGC	2 cut(s)	168, 274
AspLEI	GCGC	2 cut(s)	72, 337
AspS9I	GGNCC	3 cut(s)	31, 51, 265
AsuC2I	CCSGG	1 cut(s)	35
AsuII	TTCGAA	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	189
BauI	CACGAG	1 cut(s)	595
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	180, 286
BccI	CCATC	1 cut(s)	42
BceAI	ACGGC	2 cut(s)	76, 336
BcgI	CGANNNNNNTGC	4 cut(s)	75, 109, 586, 620
BciT130I	CCWGG	2 cut(s)	55, 318
BcnI	CCSGG	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	536
BfaI	CTAG	2 cut(s)	338, 569
BfmI	CTRYAG	1 cut(s)	323
BfoI	RGCGCY	1 cut(s)	73
BisI	GCNGC	5 cut(s)	30, 166, 169, 172, 275
BlsI	GCNGC	5 cut(s)	31, 167, 170, 173, 276
Bme1390I	CCNGG	3 cut(s)	35, 55, 318
Bme18I	GGWCC	1 cut(s)	51
BmgBI	CACGTC	1 cut(s)	40
BmgT120I	GGNCC	3 cut(s)	31, 51, 265
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	3 cut(s)	35, 55, 318
BmsI	GCATC	2 cut(s)	72, 95
BpmI	CTGGAG	2 cut(s)	94, 516
Bpu14I	TTCGAA	1 cut(s)	215
BpuEI	CTTGAG	2 cut(s)	254, 492
BpuMI	CCSGG	1 cut(s)	35
BsaBI	GATNNNNATC	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	33, 54
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 138
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	2 cut(s)	55, 318
BseDI	CCNNGG	2 cut(s)	33, 54
BseGI	GGATG	2 cut(s)	53, 63
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	2 cut(s)	111, 138
BseXI	GCAGC	2 cut(s)	180, 286
BseYI	CCCAGC	1 cut(s)	24
Bsh1236I	CGCG	1 cut(s)	293
BshFI	GGCC	2 cut(s)	32, 266
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	35, 67
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	111, 138
BsmAI	GTCTC	1 cut(s)	536
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	32, 266
Bso31I	GGTCTC	1 cut(s)	536
Bsp119I	TTCGAA	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	11, 189
Bsp143I	GATC	2 cut(s)	313, 556
BspANI	GGCC	2 cut(s)	32, 266
BspFNI	CGCG	1 cut(s)	293
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	308
BspT104I	TTCGAA	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	536
BssECI	CCNNGG	2 cut(s)	33, 54
BssMI	GATC	2 cut(s)	313, 556
BssSI	CACGAG	1 cut(s)	595
Bst2BI	CACGAG	1 cut(s)	595
Bst2UI	CCWGG	2 cut(s)	55, 318
Bst4CI	ACNGT	1 cut(s)	528
BstBI	TTCGAA	1 cut(s)	215
BstC8I	GCNNGC	6 cut(s)	109, 113, 136, 140, 163, 176
BstDEI	CTNAG	1 cut(s)	490
BstF5I	GGATG	2 cut(s)	53, 63
BstFNI	CGCG	1 cut(s)	293
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	2 cut(s)	72, 337
BstKTI	GATC	2 cut(s)	316, 559
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	2 cut(s)	313, 556
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 171, 184, 529
BstNI	CCWGG	2 cut(s)	55, 318
BstSCI	CCNGG	3 cut(s)	33, 53, 316
BstSFI	CTRYAG	1 cut(s)	323
BstUI	CGCG	1 cut(s)	293
BstV1I	GCAGC	2 cut(s)	180, 286
BsuRI	GGCC	2 cut(s)	32, 266
BtrI	CACGTC	1 cut(s)	40
BtsCI	GGATG	2 cut(s)	53, 63
BtsIMutI	CAGTG	1 cut(s)	437
Cac8I	GCNNGC	6 cut(s)	109, 113, 136, 140, 163, 176
CfoI	GCGC	2 cut(s)	72, 337
Cfr13I	GGNCC	3 cut(s)	31, 51, 265
Csp6I	GTAC	3 cut(s)	289, 343, 572
CviAII	CATG	1 cut(s)	445
CviJI	RGCY	8 cut(s)	24, 32, 187, 266, 351, 471, 494, 568
CviKI_1	RGCY	8 cut(s)	24, 32, 187, 266, 351, 471, 494, 568
CviQI	GTAC	3 cut(s)	289, 343, 572
DdeI	CTNAG	1 cut(s)	490
DpnI	GATC	2 cut(s)	315, 558
DpnII	GATC	2 cut(s)	313, 556
EciI	GGCGGA	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	189
Eco31I	GGTCTC	1 cut(s)	536
Eco47I	GGWCC	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	474
EcoRII	CCWGG	2 cut(s)	53, 316
EcoT38I	GRGCYC	1 cut(s)	189
FaeI	CATG	1 cut(s)	448
FaiI	YATR	6 cut(s)	373, 378, 409, 422, 446, 516
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	1 cut(s)	444
FauI	CCCGC	2 cut(s)	104, 131
FblI	GTMKAC	1 cut(s)	95
Fnu4HI	GCNGC	5 cut(s)	30, 166, 169, 172, 275
FokI	GGATG	2 cut(s)	50, 60
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	5 cut(s)	30, 166, 169, 172, 275
FspBI	CTAG	2 cut(s)	338, 569
GlaI	GCGC	2 cut(s)	71, 336
GluI	GCNGC	5 cut(s)	30, 166, 169, 172, 275
GsaI	CCCAGC	1 cut(s)	28
GsuI	CTGGAG	2 cut(s)	94, 516
HaeII	RGCGCY	1 cut(s)	73
HaeIII	GGCC	2 cut(s)	32, 266
HapII	CCGG	2 cut(s)	35, 67
HhaI	GCGC	2 cut(s)	72, 337
Hin1II	CATG	1 cut(s)	448
Hin6I	GCGC	2 cut(s)	70, 335
HinP1I	GCGC	2 cut(s)	70, 335
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HindIII	AAGCTT	1 cut(s)	469
HinfI	GANTC	3 cut(s)	212, 308, 392
HpaII	CCGG	2 cut(s)	35, 67
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	3 cut(s)	253, 313, 397
Hpy188III	TCNNGA	2 cut(s)	305, 509
Hpy8I	GTNNAC	1 cut(s)	96
Hpy99I	CGWCG	2 cut(s)	94, 97
HpyAV	CCTTC	1 cut(s)	449
HpyCH4III	ACNGT	1 cut(s)	528
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	1 cut(s)	532
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 171, 184, 529
HpyF3I	CTNAG	1 cut(s)	490
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	448
HspAI	GCGC	2 cut(s)	70, 335
Kzo9I	GATC	2 cut(s)	313, 556
LmnI	GCTCC	1 cut(s)	565
LpnPI	CCDG	9 cut(s)	10, 40, 48, 58, 67, 80, 303, 330, 480
Lsp1109I	GCAGC	2 cut(s)	180, 286
LweI	GCATC	2 cut(s)	72, 95
MaeI	CTAG	2 cut(s)	338, 569
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	2 cut(s)	315, 558
MboI	GATC	2 cut(s)	313, 556
MboII	GAAGA	2 cut(s)	269, 415
MfeI	CAATTG	1 cut(s)	618
MhlI	GDGCHC	2 cut(s)	11, 189
MluCI	AATT	4 cut(s)	278, 284, 501, 618
MnlI	CCTC	5 cut(s)	207, 235, 278, 291, 591
MseI	TTAA	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	171
MspI	CCGG	2 cut(s)	35, 67
MspR9I	CCNGG	3 cut(s)	35, 55, 318
MunI	CAATTG	1 cut(s)	618
MvaI	CCWGG	2 cut(s)	55, 318
MvnI	CGCG	1 cut(s)	293
MwoI	GCNNNNNNNGC	4 cut(s)	69, 171, 184, 529
NciI	CCSGG	1 cut(s)	35
NdeII	GATC	2 cut(s)	313, 556
NlaIII	CATG	1 cut(s)	448
NlaIV	GGNNCC	1 cut(s)	33
NspV	TTCGAA	1 cut(s)	215
PfeI	GAWTC	3 cut(s)	212, 308, 392
PflFI	GACNNNGTC	1 cut(s)	445
PfoI	TCCNGGA	1 cut(s)	316
PkrI	GCNGC	5 cut(s)	31, 167, 170, 173, 276
Psp6I	CCWGG	2 cut(s)	53, 316
PspFI	CCCAGC	1 cut(s)	24
PspGI	CCWGG	2 cut(s)	53, 316
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	3 cut(s)	31, 51, 265
PsyI	GACNNNGTC	1 cut(s)	445
RsaI	GTAC	3 cut(s)	290, 344, 573
RsaNI	GTAC	3 cut(s)	289, 343, 572
SalI	GTCGAC	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	473
SatI	GCNGC	5 cut(s)	30, 166, 169, 172, 275
Sau3AI	GATC	2 cut(s)	313, 556
Sau96I	GGNCC	3 cut(s)	31, 51, 265
ScrFI	CCNGG	3 cut(s)	35, 55, 318
SduI	GDGCHC	2 cut(s)	11, 189
SetI	ASST	8 cut(s)	26, 42, 56, 199, 414, 473, 496, 570
SfaNI	GCATC	2 cut(s)	72, 95
SfcI	CTRYAG	1 cut(s)	323
SfuI	TTCGAA	1 cut(s)	215
SinI	GGWCC	1 cut(s)	51
SmlI	CTYRAG	2 cut(s)	269, 507
SmoI	CTYRAG	2 cut(s)	269, 507
Sse9I	AATT	4 cut(s)	278, 284, 501, 618
SspMI	CTAG	2 cut(s)	338, 569
StyD4I	CCNGG	3 cut(s)	33, 53, 316
TaaI	ACNGT	1 cut(s)	528
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	95, 215
TaqII	GACCGA	1 cut(s)	404
TasI	AATT	4 cut(s)	278, 284, 501, 618
TatI	WGTACW	1 cut(s)	571
TauI	GCSGC	3 cut(s)	32, 168, 174
TfiI	GAWTC	3 cut(s)	212, 308, 392
Tru1I	TTAA	1 cut(s)	473
Tru9I	TTAA	1 cut(s)	473
TscAI	CASTG	1 cut(s)	444
TseI	GCWGC	2 cut(s)	168, 274
TspDTI	ATGAA	2 cut(s)	270, 393
TspGWI	ACGGA	2 cut(s)	372, 499
TspRI	CASTG	1 cut(s)	444
Tth111I	GACNNNGTC	1 cut(s)	445
VpaK11BI	GGWCC	1 cut(s)	51
XmiI	GTMKAC	1 cut(s)	95
XspI	CTAG	2 cut(s)	338, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.