Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Forward (+)

20326277 .. 20335093

Gene Structure 8817 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g26640.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2430 bp

ATGGCTTCGCAAGATCCGACCAACACCGCAAGCGGCAGCGGCAAGCACGATGAGCCCACCAAACCTCCGCCCCCAAAGGATTCCAAAAAGAAAGATGACAAGAAAGACGAGGATTTGTCCGATGAAGATTTGGCCCTCAAGCAGCAATTAGAATTGTACGTGGAGAGGGTTCAAGATTCTGATCCTGGACTACAGAAAGTTGCGCTAGAGAGTATGAGGCAGGAAATTCGTACCTCAACTAGTTCCATGACCTCAGTACCAAAGCCGTTAAAATATCTTCGCCCGCATTACGGAACTCTAAAAGCATACTATGAAACAATGACCGATTCAGATTTGAAGAAATACCTTGCGGATATACTGTCGGTTTTGGCACTGACCATGTCTGCTGAAGGAGAACGGGAAAGCTTAAAGTTTAGATTGTTGGGTTCAGACGGTGATATTGGTTCATGGGGACATGAATATGTCAGGAACTTAGCTGGAGAAATTGCTCAAGAATATGCCAAGCGACAGAGTGATGAAACCCCGTTTGATGATCTAATGGAGCTAGTACAACAAATAGTTGCTTTTCACATGAGGCACAATGCCGAACCGGAAGCTGTTGACCTTTTAATGGAGGTTGAAGACCTTGATCTGTTAGTCGAGCATGTTGATAAGACAAATTTCAAGAGGACTTGTCTTTACCTCATCAGTTTGGCAAGATTGGTTCCTGGACCAGATGATATGTTAGTTTTGGATATCGCATTCATGATAAATCTGAAATTTGAAGAATATCCAAATGCACTTCTGATTGCTCTTTTCCTTGACAATAAGGAGTATGTAAAGCAAGTCTTTACATCTTGTGATGATCTGCTGCGTAAAAAGCAATTCTGTTACATCCTTGCCCGACATGGTAGTAATTTTGAGCTTAATGATGAGATGGTGTCAGAAGATGAAGAAAGAGAAGCAATGCAGGACATTATTAATAACGCTAAACTCAGTGAAGGTTATCTTACCCTTGCTCGTGATATTGAGGTCATGGAGGCCAAAACTCCAGAAGATATCTACAAGGCACACTTGCTTGATGGCCGGGCTAGTGCTGGTGCCAGTGTTGATTCAGCCAGACAAAACTTAGCCGCAACATTTGTTAATGCATTTGTCAATGCTGGGTTTGGTCAGGATAAGTTAATGACAGTTCCATCAGATGCCTCAAGTGGTGGTGCATCAGGAAACTGGCTTTTCAAGAATAAGGAGCATGGAAAGACCAGTGCTGCAGCAAGTCTGGGTACGATTTTACTGTGGGATGTCGACTCTGGGCTCGCTCAAATTGACAAGTACTTCCACAGCAACGACAACCATGTTATTGCGGGTGCTTTGCTAGGGGTTGGGATTGTGAATTGCAGTATAAAAAATGATTGTGATCCAGCACTGGCACTTCTGGGCGAATACATTGACAAAGAAGATCCATCTATCCGAATTGGTGCAATAATGGGTCTAGGGATTGCATATGCTGGAGCTGAGAACGAACAGATACGTAGCAAGCTGACTACTATACTCAATGACGCAAAAGCTCCCCTTGATGTTATCACATTCGCTGCAATCTCCTTGGGGTTGATATATGTTGGATCTTGCAATGAAGAGGTTGCTCAGGCAATCATATTTGCACTAATGGACCGAAGTGATGCCGAGTTGGGGGAGCCCCTTGCTCGCCTAATACCCCTTAGCCTAGGTCTTCTGTTCCTTGGGAAGCAGGAAAGTGCGGAGGCAACTGTTGAAGTTGCAAAGACATTTCAAGAAAAAATCAGAAAACATTGTGATATGACTCTGCTTTCTTGTGCTTATGCGGGAACAGGAAATGTTCTCAAGGTTCAAAATCTTCTCGGCCATTGTTCACAGCATCTTGAGAAGGGTGAAACACACCAGGGTCCTGCTGTGCTTGGTATTGCGATGATAGCAATGGCTGAAGAGCTAGGACTTGAAATGGCAATTCGTTCATTGGAGCATCTTTTACAGTATGGAGAACAAAATATCCGTCGGGCAGTTCCTTTGGCTCTTGGTCTCCTTTGCATATCAAATCCAAAGGTCACTGTTATGGACACATTAAGCAGACTTAGCCATGACACAGATTCGGAAGTAGCAATGGCGGCAGTAATTTCCTTAGGTGTGATAGGGGCAGGAACCAACAATGCCAGAATAGCCGCCATGCTTCGCAATCTTTCGAGTTATTACTACAAGGATGCTAGCCTGCTCTTCTGTGTGCGAATTGCTCAAGGTCTTGTTCATTTAGGAAAGGGTTTGTTGACACTAAATCCATATCATTCTGACCGTTTTTTGTTATCACCGGCAGCACTTGGTGGAATCATAATCATGCTGCATGCATGTCTTGATATGAAAGCCATCATTTTGGGGAAGTATCATTATGTTCTCTACTTTCTGATATTGGCAATGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

810

Amino Acids

88.84

Weight (kDa)

5.05

Isoelectric Point (pI)

34.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN1_RPN2_N	PF17781	50 - 352	7.5e-124	RPN1 N-terminal domain
RPN1_C	PF18051	826 - 879	4.4e-31	26S proteasome non-ATPase regulatory subunit RPN1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1079
AccI	GTMKAC	1 cut(s)	1284
AclWI	GGATC	5 cut(s)	8, 176, 1391, 1433, 1609
AcoI	YGGCCR	2 cut(s)	1063, 1858
AcsI	RAATTY	3 cut(s)	225, 658, 758
AcuI	CTGAAG	2 cut(s)	408, 1959
AdeI	CACNNNGTG	1 cut(s)	2330
AfaI	GTAC	6 cut(s)	158, 232, 258, 549, 1264, 1313
AfiI	CCNNNNNNNGG	3 cut(s)	290, 610, 1668
AhlI	ACTAGT	1 cut(s)	239
AjnI	CCWGG	3 cut(s)	184, 706, 1896
AloI	GAACNNNNNNTCC	2 cut(s)	1989, 2021
AluBI	AGCT	9 cut(s)	405, 476, 544, 596, 904, 1493, 1519, 1547, 1945
AluI	AGCT	9 cut(s)	405, 476, 544, 596, 904, 1493, 1519, 1547, 1945
Alw26I	GTCTC	1 cut(s)	2039
AlwI	GGATC	5 cut(s)	8, 176, 1391, 1433, 1609
AoxI	GGCC	4 cut(s)	132, 1020, 1063, 1858
ApeKI	GCWGC	8 cut(s)	36, 142, 850, 1247, 1250, 1571, 2321, 2347
ApoI	RAATTY	3 cut(s)	225, 658, 758
ArsI	GACNNNNNNTTYG	2 cut(s)	1993, 2025
AseI	ATTAAT	1 cut(s)	960
AspA2I	CCTAGG	1 cut(s)	1702
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	4 cut(s)	133, 710, 1648, 1901
AsuC2I	CCSGG	1 cut(s)	1067
AsuHPI	GGTGA	3 cut(s)	446, 1898, 2307
AsuNHI	GCTAGC	1 cut(s)	2216
AvaII	GGWCC	3 cut(s)	710, 1648, 1901
AvrII	CCTAGG	1 cut(s)	1702
AxyI	CCTNAGG	1 cut(s)	2134
BaeI	ACNNNNGTAYC	2 cut(s)	240, 273
BanI	GGYRCC	1 cut(s)	1079
BanII	GRGCYC	3 cut(s)	57, 1296, 1677
BauI	CACGAG	1 cut(s)	999
BbsI	GAAGAC	2 cut(s)	627, 1700
BbvI	GCAGC	8 cut(s)	48, 154, 837, 1234, 1262, 1558, 2333, 2334
BccI	CCATC	5 cut(s)	910, 1055, 1183, 1450, 2381
BceAI	ACGGC	1 cut(s)	250
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BciT130I	CCWGG	3 cut(s)	186, 708, 1898
BcnI	CCSGG	1 cut(s)	1067
BcoDI	GTCTC	1 cut(s)	2039
BcuI	ACTAGT	1 cut(s)	239
BfaI	CTAG	9 cut(s)	206, 240, 545, 1071, 1355, 1472, 1703, 1946, 2217
BfmI	CTRYAG	2 cut(s)	191, 1248
BlnI	CCTAGG	1 cut(s)	1702
BmcAI	AGTACT	1 cut(s)	1313
Bme1390I	CCNGG	4 cut(s)	186, 708, 1067, 1898
Bme18I	GGWCC	3 cut(s)	710, 1648, 1901
BmgT120I	GGNCC	4 cut(s)	133, 710, 1648, 1901
BmiI	GGNNCC	5 cut(s)	705, 1081, 1674, 1902, 2155
BmrFI	CCNGG	4 cut(s)	186, 708, 1067, 1898
BmsI	GCATC	6 cut(s)	1171, 1208, 1648, 1882, 1987, 2203
BmtI	GCTAGC	1 cut(s)	2220
BpiI	GAAGAC	2 cut(s)	627, 1700
BpmI	CTGGAG	3 cut(s)	498, 1014, 1509
Bpu10I	CCTNAGC	2 cut(s)	1623, 1697
BpuEI	CTTGAG	6 cut(s)	122, 474, 1171, 1823, 1898, 2229
BpuMI	CCSGG	1 cut(s)	1067
BsaAI	YACGTR	2 cut(s)	160, 1511
BsaBI	GATNNNNATC	2 cut(s)	180, 1395
BsaI	GGTCTC	1 cut(s)	2039
BsaJI	CCNNGG	4 cut(s)	1581, 1702, 1717, 1897
BsaWI	WCCGGW	1 cut(s)	589
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	3 cut(s)	290, 610, 1668
Bse118I	RCCGGY	1 cut(s)	2317
Bse1I	ACTGG	4 cut(s)	1083, 1214, 1242, 1410
Bse21I	CCTNAGG	1 cut(s)	2134
Bse3DI	GCAATG	5 cut(s)	951, 1615, 1938, 2121, 2427
Bse8I	GATNNNNATC	2 cut(s)	180, 1395
BseBI	CCWGG	3 cut(s)	186, 708, 1898
BseDI	CCNNGG	4 cut(s)	1581, 1702, 1717, 1897
BseGI	GGATG	3 cut(s)	873, 1285, 2218
BseJI	GATNNNNATC	2 cut(s)	180, 1395
BseLI	CCNNNNNNNGG	3 cut(s)	290, 610, 1668
BseMI	GCAATG	5 cut(s)	951, 1615, 1938, 2121, 2427
BseMII	CTCAG	4 cut(s)	267, 988, 1485, 1637
BseNI	ACTGG	4 cut(s)	1083, 1214, 1242, 1410
BseXI	GCAGC	8 cut(s)	48, 154, 837, 1234, 1262, 1558, 2333, 2334
BseYI	CCCAGC	1 cut(s)	1142
BshFI	GGCC	4 cut(s)	134, 1022, 1065, 1860
BshNI	GGYRCC	1 cut(s)	1079
BsiSI	CCGG	3 cut(s)	590, 1066, 2318
BslFI	GGGAC	1 cut(s)	465
BslI	CCNNNNNNNGG	3 cut(s)	290, 610, 1668
BsmAI	GTCTC	1 cut(s)	2039
BsmFI	GGGAC	1 cut(s)	465
BsmI	GAATGC	1 cut(s)	740
BsnI	GGCC	4 cut(s)	134, 1022, 1065, 1860
Bso31I	GGTCTC	1 cut(s)	2039
Bsp1286I	GDGCHC	3 cut(s)	57, 1296, 1677
Bsp143I	GATC	8 cut(s)	13, 181, 532, 628, 844, 1396, 1438, 1601
BspANI	GGCC	4 cut(s)	134, 1022, 1065, 1860
BspCNI	CTCAG	4 cut(s)	266, 987, 1486, 1636
BspHI	TCATGA	1 cut(s)	744
BspLI	GGNNCC	5 cut(s)	705, 1081, 1674, 1902, 2155
BspMAI	CTGCAG	1 cut(s)	1252
BspOI	GCTAGC	1 cut(s)	2220
BspPI	GGATC	5 cut(s)	8, 176, 1391, 1433, 1609
BspQI	GCTCTTC	2 cut(s)	1935, 2231
BspT107I	GGYRCC	1 cut(s)	1079
BspTNI	GGTCTC	1 cut(s)	2039
BsrDI	GCAATG	5 cut(s)	951, 1615, 1938, 2121, 2427
BsrFI	RCCGGY	1 cut(s)	2317
BsrI	ACTGG	4 cut(s)	1083, 1214, 1242, 1410
BssAI	RCCGGY	1 cut(s)	2317
BssECI	CCNNGG	4 cut(s)	1581, 1702, 1717, 1897
BssMI	GATC	8 cut(s)	13, 181, 532, 628, 844, 1396, 1438, 1601
BssSI	CACGAG	1 cut(s)	999
BssT1I	CCWWGG	3 cut(s)	1581, 1702, 1717
Bst2BI	CACGAG	1 cut(s)	999
Bst2UI	CCWGG	3 cut(s)	186, 708, 1898
Bst4CI	ACNGT	8 cut(s)	360, 434, 1171, 1275, 1747, 1989, 2065, 2303
Bst6I	CTCTTC	3 cut(s)	1608, 1935, 2231
BstBAI	YACGTR	2 cut(s)	160, 1511
BstC8I	GCNNGC	9 cut(s)	31, 44, 284, 1296, 1517, 1684, 2218, 2222, 2352
BstDEI	CTNAG	9 cut(s)	253, 472, 974, 1108, 1494, 1623, 1697, 2087, 2134
BstF5I	GGATG	3 cut(s)	873, 1285, 2218
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	8 cut(s)	16, 184, 535, 631, 847, 1399, 1441, 1604
BstMAI	GTCTC	1 cut(s)	2039
BstMBI	GATC	8 cut(s)	13, 181, 532, 628, 844, 1396, 1438, 1601
BstMWI	GCNNNNNNNGC	7 cut(s)	39, 52, 859, 1928, 2088, 2120, 2171
BstNI	CCWGG	3 cut(s)	186, 708, 1898
BstNSI	RCATGY	3 cut(s)	647, 2354, 2358
BstSCI	CCNGG	4 cut(s)	184, 706, 1065, 1896
BstSFI	CTRYAG	2 cut(s)	191, 1248
BstSNI	TACGTA	1 cut(s)	1511
BstV1I	GCAGC	8 cut(s)	48, 154, 837, 1234, 1262, 1558, 2333, 2334
BstV2I	GAAGAC	2 cut(s)	627, 1700
BstX2I	RGATCY	3 cut(s)	13, 1438, 1601
BstXI	CCANNNNNNTGG	1 cut(s)	2380
BstYI	RGATCY	3 cut(s)	13, 1438, 1601
Bsu36I	CCTNAGG	1 cut(s)	2134
BsuRI	GGCC	4 cut(s)	134, 1022, 1065, 1860
BtgZI	GCGATG	1 cut(s)	1937
BtsCI	GGATG	3 cut(s)	873, 1285, 2218
BtsIMutI	CAGTG	6 cut(s)	371, 982, 1090, 1249, 1403, 2061
Cac8I	GCNNGC	9 cut(s)	31, 44, 284, 1296, 1517, 1684, 2218, 2222, 2352
CciI	TCATGA	1 cut(s)	744
CfoI	GCGC	1 cut(s)	205
Cfr10I	RCCGGY	1 cut(s)	2317
Cfr13I	GGNCC	4 cut(s)	133, 710, 1648, 1901
CseI	GACGC	1 cut(s)	1547
Csp6I	GTAC	6 cut(s)	157, 231, 257, 548, 1263, 1312
CviQI	GTAC	6 cut(s)	157, 231, 257, 548, 1263, 1312
DdeI	CTNAG	9 cut(s)	253, 472, 974, 1108, 1494, 1623, 1697, 2087, 2134
DpnI	GATC	8 cut(s)	15, 183, 534, 630, 846, 1398, 1440, 1603
DpnII	GATC	8 cut(s)	13, 181, 532, 628, 844, 1396, 1438, 1601
DraIII	CACNNNGTG	1 cut(s)	2330
EaeI	YGGCCR	2 cut(s)	1063, 1858
Eam1104I	CTCTTC	3 cut(s)	1608, 1935, 2231
EarI	CTCTTC	3 cut(s)	1608, 1935, 2231
EciI	GGCGGA	1 cut(s)	57
Eco105I	TACGTA	1 cut(s)	1511
Eco130I	CCWWGG	3 cut(s)	1581, 1702, 1717
Eco24I	GRGCYC	3 cut(s)	57, 1296, 1677
Eco31I	GGTCTC	1 cut(s)	2039
Eco32I	GATATC	2 cut(s)	736, 1039
Eco47I	GGWCC	3 cut(s)	710, 1648, 1901
Eco57I	CTGAAG	2 cut(s)	408, 1959
Eco81I	CCTNAGG	1 cut(s)	2134
EcoO109I	RGGNCCY	1 cut(s)	1901
EcoRII	CCWGG	3 cut(s)	184, 706, 1896
EcoRV	GATATC	2 cut(s)	736, 1039
EcoT14I	CCWWGG	3 cut(s)	1581, 1702, 1717
EcoT22I	ATGCAT	2 cut(s)	1132, 2356
EcoT38I	GRGCYC	3 cut(s)	57, 1296, 1677
ErhI	CCWWGG	3 cut(s)	1581, 1702, 1717
FalI	AAGNNNNNCTT	8 cut(s)	812, 844, 972, 1004, 1037, 1069, 1536, 1568
FaqI	GGGAC	1 cut(s)	465
FauI	CCCGC	3 cut(s)	291, 1336, 1813
FauNDI	CATATG	1 cut(s)	1483
FblI	GTMKAC	1 cut(s)	1284
FokI	GGATG	3 cut(s)	860, 1292, 2225
FriOI	GRGCYC	3 cut(s)	57, 1296, 1677
FspBI	CTAG	9 cut(s)	206, 240, 545, 1071, 1355, 1472, 1703, 1946, 2217
GlaI	GCGC	1 cut(s)	204
GsaI	CCCAGC	1 cut(s)	1146
GsuI	CTGGAG	3 cut(s)	498, 1014, 1509
HaeIII	GGCC	4 cut(s)	134, 1022, 1065, 1860
HapII	CCGG	3 cut(s)	590, 1066, 2318
HgaI	GACGC	1 cut(s)	1547
HhaI	GCGC	1 cut(s)	205
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HincII	GTYRAC	3 cut(s)	601, 1285, 2277
HindII	GTYRAC	3 cut(s)	601, 1285, 2277
HindIII	AAGCTT	1 cut(s)	403
HinfI	GANTC	8 cut(s)	80, 176, 326, 1091, 1286, 1798, 2102, 2334
HpaII	CCGG	3 cut(s)	590, 1066, 2318
HphI	GGTGA	3 cut(s)	446, 1898, 2307
Hpy166II	GTNNAC	4 cut(s)	601, 1285, 1868, 2277
Hpy8I	GTNNAC	4 cut(s)	601, 1285, 1868, 2277
Hpy99I	CGWCG	1 cut(s)	2013
HpyAV	CCTTC	3 cut(s)	383, 974, 1876
HpyCH4III	ACNGT	8 cut(s)	360, 434, 1171, 1275, 1747, 1989, 2065, 2303
HpyCH4IV	ACGT	2 cut(s)	159, 1510
HpyF10VI	GCNNNNNNNGC	7 cut(s)	39, 52, 859, 1928, 2088, 2120, 2171
HpyF3I	CTNAG	9 cut(s)	253, 472, 974, 1108, 1494, 1623, 1697, 2087, 2134
HpySE526I	ACGT	2 cut(s)	159, 1510
HspAI	GCGC	1 cut(s)	203
Kzo9I	GATC	8 cut(s)	13, 181, 532, 628, 844, 1396, 1438, 1601
LguI	GCTCTTC	2 cut(s)	1935, 2231
LmnI	GCTCC	6 cut(s)	541, 1228, 1490, 1552, 1672, 1975
Lsp1109I	GCAGC	8 cut(s)	48, 154, 837, 1234, 1262, 1558, 2333, 2334
LweI	GCATC	6 cut(s)	1171, 1208, 1648, 1882, 1987, 2203
MaeI	CTAG	9 cut(s)	206, 240, 545, 1071, 1355, 1472, 1703, 1946, 2217
MaeII	ACGT	2 cut(s)	159, 1510
MaeIII	GTNAC	2 cut(s)	869, 2059
MalI	GATC	8 cut(s)	15, 183, 534, 630, 846, 1398, 1440, 1603
MboI	GATC	8 cut(s)	13, 181, 532, 628, 844, 1396, 1438, 1601
MflI	RGATCY	3 cut(s)	13, 1438, 1601
MhlI	GDGCHC	3 cut(s)	57, 1296, 1677
MlyI	GAGTC	2 cut(s)	1280, 1792
MmeI	TCCRAC	2 cut(s)	41, 1579
Mph1103I	ATGCAT	2 cut(s)	1132, 2356
MseI	TTAA	8 cut(s)	269, 407, 608, 906, 960, 1125, 1163, 2078
MslI	CAYNNNNRTG	3 cut(s)	459, 2066, 2342
MspA1I	CMGCKG	1 cut(s)	39
MspI	CCGG	3 cut(s)	590, 1066, 2318
MspR9I	CCNGG	4 cut(s)	186, 708, 1067, 1898
Mva1269I	GAATGC	1 cut(s)	740
MvaI	CCWGG	3 cut(s)	186, 708, 1898
MwoI	GCNNNNNNNGC	7 cut(s)	39, 52, 859, 1928, 2088, 2120, 2171
NciI	CCSGG	1 cut(s)	1067
NdeI	CATATG	1 cut(s)	1483
NdeII	GATC	8 cut(s)	13, 181, 532, 628, 844, 1396, 1438, 1601
NheI	GCTAGC	1 cut(s)	2216
NlaIV	GGNNCC	5 cut(s)	705, 1081, 1674, 1902, 2155
NmeAIII	GCCGAG	2 cut(s)	1687, 1836
NmuCI	GTSAC	1 cut(s)	2059
NsiI	ATGCAT	2 cut(s)	1132, 2356
NspI	RCATGY	3 cut(s)	647, 2354, 2358
PaeI	GCATGC	1 cut(s)	2354
PagI	TCATGA	1 cut(s)	744
PciSI	GCTCTTC	2 cut(s)	1935, 2231
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PctI	GAATGC	1 cut(s)	740
PfeI	GAWTC	6 cut(s)	80, 176, 326, 1091, 2102, 2334
PflFI	GACNNNGTC	1 cut(s)	379
PfoI	TCCNGGA	2 cut(s)	184, 706
PleI	GAGTC	2 cut(s)	1280, 1792
PpsI	GAGTC	2 cut(s)	1280, 1792
Ppu21I	YACGTR	2 cut(s)	160, 1511
PpuMI	RGGWCCY	1 cut(s)	1901
PshBI	ATTAAT	1 cut(s)	960
Psp5II	RGGWCCY	1 cut(s)	1901
Psp6I	CCWGG	3 cut(s)	184, 706, 1896
PspFI	CCCAGC	1 cut(s)	1142
PspGI	CCWGG	3 cut(s)	184, 706, 1896
PspN4I	GGNNCC	5 cut(s)	705, 1081, 1674, 1902, 2155
PspPI	GGNCC	4 cut(s)	133, 710, 1648, 1901
PspPPI	RGGWCCY	1 cut(s)	1901
PstI	CTGCAG	1 cut(s)	1252
PsuI	RGATCY	3 cut(s)	13, 1438, 1601
PsyI	GACNNNGTC	1 cut(s)	379
RsaI	GTAC	6 cut(s)	158, 232, 258, 549, 1264, 1313
RsaNI	GTAC	6 cut(s)	157, 231, 257, 548, 1263, 1312
RseI	CAYNNNNRTG	3 cut(s)	459, 2066, 2342
SalI	GTCGAC	1 cut(s)	1283
SapI	GCTCTTC	2 cut(s)	1935, 2231
SaqAI	TTAA	8 cut(s)	269, 407, 608, 906, 960, 1125, 1163, 2078
Sau3AI	GATC	8 cut(s)	13, 181, 532, 628, 844, 1396, 1438, 1601
Sau96I	GGNCC	4 cut(s)	133, 710, 1648, 1901
ScaI	AGTACT	1 cut(s)	1313
SchI	GAGTC	2 cut(s)	1280, 1792
ScrFI	CCNGG	4 cut(s)	186, 708, 1067, 1898
SduI	GDGCHC	3 cut(s)	57, 1296, 1677
SfaNI	GCATC	6 cut(s)	1171, 1208, 1648, 1882, 1987, 2203
SfcI	CTRYAG	2 cut(s)	191, 1248
SinI	GGWCC	3 cut(s)	710, 1648, 1901
SmiMI	CAYNNNNRTG	3 cut(s)	459, 2066, 2342
SmlI	CTYRAG	6 cut(s)	137, 489, 1186, 1838, 1877, 2244
SmoI	CTYRAG	6 cut(s)	137, 489, 1186, 1838, 1877, 2244
SnaBI	TACGTA	1 cut(s)	1511
SpeI	ACTAGT	1 cut(s)	239
SphI	GCATGC	1 cut(s)	2354
SspMI	CTAG	9 cut(s)	206, 240, 545, 1071, 1355, 1472, 1703, 1946, 2217
StyD4I	CCNGG	4 cut(s)	184, 706, 1065, 1896
StyI	CCWWGG	3 cut(s)	1581, 1702, 1717
TaaI	ACNGT	8 cut(s)	360, 434, 1171, 1275, 1747, 1989, 2065, 2303
TaiI	ACGT	2 cut(s)	162, 1513
TaqI	TCGA	3 cut(s)	639, 1284, 2195
TaqII	GACCGA	2 cut(s)	338, 1665
TatI	WGTACW	2 cut(s)	547, 1311
TauI	GCSGC	5 cut(s)	36, 42, 1115, 2123, 2177
TfiI	GAWTC	6 cut(s)	80, 176, 326, 1091, 2102, 2334
Tru1I	TTAA	8 cut(s)	269, 407, 608, 906, 960, 1125, 1163, 2078
Tru9I	TTAA	8 cut(s)	269, 407, 608, 906, 960, 1125, 1163, 2078
TscAI	CASTG	6 cut(s)	378, 982, 1090, 1249, 1410, 2068
TseFI	GTSAC	1 cut(s)	2059
TseI	GCWGC	8 cut(s)	36, 142, 850, 1247, 1250, 1571, 2321, 2347
Tsp45I	GTSAC	1 cut(s)	2059
TspGWI	ACGGA	2 cut(s)	306, 1997
TspRI	CASTG	6 cut(s)	378, 982, 1090, 1249, 1410, 2068
Tth111I	GACNNNGTC	1 cut(s)	379
VpaK11BI	GGWCC	3 cut(s)	710, 1648, 1901
VspI	ATTAAT	1 cut(s)	960
XapI	RAATTY	3 cut(s)	225, 658, 758
XceI	RCATGY	3 cut(s)	647, 2354, 2358
XmaJI	CCTAGG	1 cut(s)	1702
XmiI	GTMKAC	1 cut(s)	1284
XspI	CTAG	9 cut(s)	206, 240, 545, 1071, 1355, 1472, 1703, 1946, 2217
ZrmI	AGTACT	1 cut(s)	1313
Zsp2I	ATGCAT	2 cut(s)	1132, 2356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.