Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Reverse (-)

24339666 .. 24343300

Gene Structure 3635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG151600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGACTCTGCTTTCTTGTGCTTATGCGGGAACAGGAAATGTTCTCAAGGTTCAAAACCTTCTTGGCCATTGTTCACAACATCTTGAGAAGGGTGAAACACACCAGGGGCCTGCAGTGCTTGGTATTGCGATGATAGCAATGGCTGAAGAGTTGGGACTTGAAATGGCAATTCGTTCATTGGAGAATCTTCTACATGATGACAAGACAAATATTGGCTCCTGCAATGACGACATTGCTCAAGCCGTGATAGTTATATGCATATCCCAAATTGAATCAGAGTTGGGGGAGGCTCTTGCTCAGTTTGTTTGTCATTCACCCAAAAATCTAAAAACCCCAAACCATCCAAACCCTAATTCTGGAAAATTGTTGTTTCCTTCACCGAATGCAAGAACTGAAGAAGGTCGTCTTTCTTTGGTTGAAATGTCTGATTCCGGCTGTATTGCTTGTTTTTGGGTTTTGCCAACAAACAATGACAAATGCAAGGTAAGCTTTAGTCTAACATTGCTAACAAGGCTTGTATTTGCGAGTCGTTTGAGGACTGGCAATTCTAAAGGCAGGTGGTTAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

189

Amino Acids

20.49

Weight (kDa)

6.29

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	546
Acc36I	ACCTGC	1 cut(s)	546
AciI	CCGC	1 cut(s)	26
AcoI	YGGCCR	1 cut(s)	64
AcuI	CTGAAG	2 cut(s)	165, 414
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgsI	TTSAA	4 cut(s)	53, 161, 272, 419
AjnI	CCWGG	1 cut(s)	102
AjuI	GAANNNNNNNTTGG	2 cut(s)	337, 369
AluBI	AGCT	1 cut(s)	489
AluI	AGCT	1 cut(s)	489
AoxI	GGCC	2 cut(s)	64, 107
AspS9I	GGNCC	1 cut(s)	107
AsuHPI	GGTGA	3 cut(s)	104, 306, 369
BalI	TGGCCA	1 cut(s)	66
BccI	CCATC	1 cut(s)	348
BceAI	ACGGC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	546
Bme1390I	CCNGG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	2 cut(s)	108, 217
BmrFI	CCNGG	1 cut(s)	104
BpuEI	CTTGAG	3 cut(s)	29, 104, 222
BsaJI	CCNNGG	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	1 cut(s)	544
Bse3DI	GCAATG	4 cut(s)	144, 229, 231, 500
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMI	GCAATG	4 cut(s)	144, 229, 231, 500
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	1 cut(s)	544
BshFI	GGCC	2 cut(s)	66, 109
BsiSI	CCGG	1 cut(s)	432
BslFI	GGGAC	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	168
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	2 cut(s)	66, 109
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	2 cut(s)	66, 109
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	2 cut(s)	108, 217
BspMAI	CTGCAG	1 cut(s)	115
BspMI	ACCTGC	1 cut(s)	546
BsrDI	GCAATG	4 cut(s)	144, 229, 231, 500
BsrI	ACTGG	1 cut(s)	544
BssECI	CCNNGG	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	104
Bst6I	CTCTTC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	340
BstMWI	GCNNNNNNNGC	4 cut(s)	115, 134, 486, 511
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	111
BsuRI	GGCC	2 cut(s)	66, 109
BtgZI	GCGATG	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	340
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
BveI	ACCTGC	1 cut(s)	546
Cac8I	GCNNGC	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	107
CviAII	CATG	1 cut(s)	194
CviJI	RGCY	9 cut(s)	66, 109, 143, 216, 242, 290, 435, 489, 514
CviKI_1	RGCY	9 cut(s)	66, 109, 143, 216, 242, 290, 435, 489, 514
DdeI	CTNAG	1 cut(s)	297
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco57I	CTGAAG	2 cut(s)	165, 414
EcoO109I	RGGNCCY	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	102
EcoT22I	ATGCAT	1 cut(s)	260
FaeI	CATG	1 cut(s)	197
FaiI	YATR	5 cut(s)	24, 195, 254, 256, 260
FalI	AAGNNNNNCTT	4 cut(s)	390, 422, 473, 505
FaqI	GGGAC	1 cut(s)	168
FatI	CATG	1 cut(s)	193
FauI	CCCGC	1 cut(s)	19
FokI	GGATG	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	66, 109
HapII	CCGG	1 cut(s)	432
Hin1II	CATG	1 cut(s)	197
HindIII	AAGCTT	1 cut(s)	487
HinfI	GANTC	5 cut(s)	4, 184, 272, 428, 526
HpaII	CCGG	1 cut(s)	432
HphI	GGTGA	3 cut(s)	104, 306, 369
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	2 cut(s)	277, 427
Hpy188III	TCNNGA	2 cut(s)	83, 357
Hpy8I	GTNNAC	1 cut(s)	74
HpyAV	CCTTC	4 cut(s)	68, 82, 384, 392
HpyCH4V	TGCA	5 cut(s)	113, 222, 258, 386, 480
HpyF10VI	GCNNNNNNNGC	4 cut(s)	115, 134, 486, 511
HpyF3I	CTNAG	1 cut(s)	297
Hsp92II	CATG	1 cut(s)	197
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	9 cut(s)	18, 89, 116, 123, 232, 342, 445, 525, 541
MboII	GAAGA	3 cut(s)	158, 179, 407
MlsI	TGGCCA	1 cut(s)	66
MluCI	AATT	5 cut(s)	168, 267, 352, 362, 544
MluNI	TGGCCA	1 cut(s)	66
MlyI	GAGTC	1 cut(s)	535
MnlI	CCTC	2 cut(s)	280, 528
Mox20I	TGGCCA	1 cut(s)	66
Mph1103I	ATGCAT	1 cut(s)	260
MscI	TGGCCA	1 cut(s)	66
MseI	TTAA	1 cut(s)	563
Msp20I	TGGCCA	1 cut(s)	66
MspI	CCGG	1 cut(s)	432
MspR9I	CCNGG	1 cut(s)	104
Mva1269I	GAATGC	1 cut(s)	388
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	4 cut(s)	115, 134, 486, 511
NlaIII	CATG	1 cut(s)	197
NlaIV	GGNNCC	2 cut(s)	108, 217
NsiI	ATGCAT	1 cut(s)	260
PaqCI	CACCTGC	1 cut(s)	546
PctI	GAATGC	1 cut(s)	388
PfeI	GAWTC	3 cut(s)	184, 272, 428
PleI	GAGTC	1 cut(s)	534
PpsI	GAGTC	1 cut(s)	534
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	108, 217
PspPI	GGNCC	1 cut(s)	107
PstI	CTGCAG	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	563
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	1 cut(s)	535
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	6 cut(s)	51, 60, 403, 486, 491, 560
SfcI	CTRYAG	1 cut(s)	111
SmlI	CTYRAG	3 cut(s)	44, 83, 237
SmoI	CTYRAG	3 cut(s)	44, 83, 237
Sse9I	AATT	5 cut(s)	168, 267, 352, 362, 544
SsiI	CCGC	1 cut(s)	26
SspI	AATATT	1 cut(s)	211
StyD4I	CCNGG	1 cut(s)	102
TasI	AATT	5 cut(s)	168, 267, 352, 362, 544
TfiI	GAWTC	3 cut(s)	184, 272, 428
Tru1I	TTAA	1 cut(s)	563
Tru9I	TTAA	1 cut(s)	563
TscAI	CASTG	1 cut(s)	120
TspDTI	ATGAA	1 cut(s)	165
TspRI	CASTG	1 cut(s)	120
Zsp2I	ATGCAT	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.