Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Reverse (-)

57637027 .. 57639894

Gene Structure 2868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014798

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGACCTCAGTTCCAAAGCCGTTAAAATATCTTCGCCCGCATTACGGAACTCTAAAAGCATATTATGAAACAATGAGTGATTCGGATTTGAAGAAATACCTCGCAGATATACTGTCGGTTTTGGCATTGACCATGTCTGCTGAAGGAGAACGGGAAAGCTTAAAGTTTAGATTATTGGCTTCAGACGGTGATATTGGTTCATGGGGCCATGAATATTTACAGAGTGATCAGACCCCCTTTGATGATCTAATGGAACTAGTACAACAAATAGTTGCCTTTCACATGAGGCACAATGCCGAACCGGAAGCTGTTGACCTTTTAATGGAGGGGGAAGACCTTGATTTGTTAGTTGATCATGAGCATGTTGATAAGACAAATTTTAAGAGGACTTGTCTCTACCTCACCAGTTCGGCAAGATACCTTCCAGGACCAGATGATATGTTAGTTTTGGATATTGCATTCATGATATATCTGAAATTTGAAGAGTATCCAAATGCACTTCAGATTGCTCTTTTCCTCGACAATAAGGAGTATGTAAAGCAAGTCTTTACCTCTTGTGATGATCTGCTGCGTAAAAAGCAATTCTGTTACATCCTTGCCAGACATGGCAGTAATTTTGAGCTTGACAATGAGATGGTTGCAGAAGATGAAGAAAGAGAAGCATTGCAGGACAATATCAATAACGCTAGACTCAGTGAAGGTTATCTTACCCTTGCTCGTGATATTGAGGTCATGGAGGCCAAAACTCCAGAAGATATATACAAGGTTTTGAACTTTTCATTTCATGTCATAGATCTTGAAAAGTTCTATGACTTTCTGTTTTATTTTCTTTCTTTAAATCTTGAAACAATATGGCCCGGCAAAAAGGTGGGTTTAGCCTGTAGCTTAACCGGTTGTACGTGTTTAACCTCACGGGGTGAGTCTCATCCATCGATTCTGAGTGACATTAGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

319

Amino Acids

36.63

Weight (kDa)

4.71

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN1_RPN2_N	PF17781	1 - 256	1.6e-90	RPN1 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	38
AcsI	RAATTY	2 cut(s)	376, 476
AcuI	CTGAAG	3 cut(s)	162, 165, 485
AdeI	CACNNNGTG	1 cut(s)	917
AfaI	GTAC	2 cut(s)	261, 898
AfiI	CCNNNNNNNGG	2 cut(s)	44, 322
AflIII	ACRYGT	1 cut(s)	899
AgeI	ACCGGT	1 cut(s)	890
AgsI	TTSAA	5 cut(s)	91, 482, 772, 800, 845
AhlI	ACTAGT	1 cut(s)	256
AjnI	CCWGG	1 cut(s)	424
AluBI	AGCT	4 cut(s)	159, 308, 622, 885
AluI	AGCT	4 cut(s)	159, 308, 622, 885
Alw26I	GTCTC	2 cut(s)	398, 927
AoxI	GGCC	3 cut(s)	205, 738, 854
ApeKI	GCWGC	1 cut(s)	568
ApoI	RAATTY	2 cut(s)	376, 476
AsiGI	ACCGGT	1 cut(s)	890
AspS9I	GGNCC	3 cut(s)	205, 428, 855
AsuC2I	CCSGG	1 cut(s)	858
AsuHPI	GGTGA	3 cut(s)	200, 394, 929
AvaII	GGWCC	1 cut(s)	428
BauI	CACGAG	1 cut(s)	717
BbsI	GAAGAC	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	555
BccI	CCATC	2 cut(s)	628, 937
BceAI	ACGGC	1 cut(s)	4
BciT130I	CCWGG	1 cut(s)	426
BciVI	GTATCC	1 cut(s)	498
BclI	TGATCA	2 cut(s)	226, 352
BcnI	CCSGG	1 cut(s)	858
BcoDI	GTCTC	2 cut(s)	398, 927
BcuI	ACTAGT	1 cut(s)	256
BfaI	CTAG	2 cut(s)	257, 687
BfmI	CTRYAG	1 cut(s)	880
BfuI	GTATCC	1 cut(s)	498
BglII	AGATCT	1 cut(s)	793
BisI	GCNGC	1 cut(s)	569
BlsI	GCNGC	1 cut(s)	570
Bme1390I	CCNGG	2 cut(s)	426, 858
Bme18I	GGWCC	1 cut(s)	428
BmgT120I	GGNCC	3 cut(s)	205, 428, 855
BmiI	GGNNCC	1 cut(s)	206
BmrFI	CCNGG	2 cut(s)	426, 858
BpiI	GAAGAC	1 cut(s)	339
BpmI	CTGGAG	1 cut(s)	732
BpuMI	CCSGG	1 cut(s)	858
Bsa29I	ATCGAT	1 cut(s)	932
BsaAI	YACGTR	1 cut(s)	900
BsaWI	WCCGGW	2 cut(s)	301, 890
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 322
Bse118I	RCCGGY	1 cut(s)	890
Bse1I	ACTGG	1 cut(s)	405
Bse3DI	GCAATG	1 cut(s)	662
BseBI	CCWGG	1 cut(s)	426
BseCI	ATCGAT	1 cut(s)	932
BseGI	GGATG	2 cut(s)	591, 925
BseLI	CCNNNNNNNGG	2 cut(s)	44, 322
BseMI	GCAATG	1 cut(s)	662
BseMII	CTCAG	3 cut(s)	21, 706, 929
BseNI	ACTGG	1 cut(s)	405
BseXI	GCAGC	1 cut(s)	555
BshFI	GGCC	3 cut(s)	207, 740, 856
BshTI	ACCGGT	1 cut(s)	890
BshVI	ATCGAT	1 cut(s)	932
BsiSI	CCGG	3 cut(s)	302, 858, 891
BslI	CCNNNNNNNGG	2 cut(s)	44, 322
BsmAI	GTCTC	2 cut(s)	398, 927
BsmI	GAATGC	1 cut(s)	458
BsnI	GGCC	3 cut(s)	207, 740, 856
Bsp143I	GATC	5 cut(s)	226, 244, 352, 562, 793
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	3 cut(s)	207, 740, 856
BspCNI	CTCAG	3 cut(s)	20, 705, 930
BspDI	ATCGAT	1 cut(s)	932
BspHI	TCATGA	2 cut(s)	355, 462
BspLI	GGNNCC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	662
BsrFI	RCCGGY	1 cut(s)	890
BsrI	ACTGG	1 cut(s)	405
BssAI	RCCGGY	1 cut(s)	890
BssMI	GATC	5 cut(s)	226, 244, 352, 562, 793
BssSI	CACGAG	1 cut(s)	717
Bst2BI	CACGAG	1 cut(s)	717
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	2 cut(s)	114, 188
Bst6I	CTCTTC	1 cut(s)	477
BstBAI	YACGTR	1 cut(s)	900
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	3 cut(s)	7, 692, 938
BstF5I	GGATG	2 cut(s)	591, 925
BstKTI	GATC	5 cut(s)	229, 247, 355, 565, 796
BstMAI	GTCTC	2 cut(s)	398, 927
BstMBI	GATC	5 cut(s)	226, 244, 352, 562, 793
BstMWI	GCNNNNNNNGC	1 cut(s)	577
BstNI	CCWGG	1 cut(s)	426
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	424, 856
BstSFI	CTRYAG	1 cut(s)	880
BstV1I	GCAGC	1 cut(s)	555
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	793
BstYI	RGATCY	1 cut(s)	793
Bsu15I	ATCGAT	1 cut(s)	932
BsuI	GTATCC	1 cut(s)	498
BsuRI	GGCC	3 cut(s)	207, 740, 856
BsuTUI	ATCGAT	1 cut(s)	932
BtsCI	GGATG	2 cut(s)	591, 925
BtsIMutI	CAGTG	1 cut(s)	700
Cac8I	GCNNGC	1 cut(s)	38
CciI	TCATGA	2 cut(s)	355, 462
Cfr10I	RCCGGY	1 cut(s)	890
Cfr13I	GGNCC	3 cut(s)	205, 428, 855
ClaI	ATCGAT	1 cut(s)	932
Csp6I	GTAC	2 cut(s)	260, 897
CspAI	ACCGGT	1 cut(s)	890
CviQI	GTAC	2 cut(s)	260, 897
DdeI	CTNAG	3 cut(s)	7, 692, 938
DpnI	GATC	5 cut(s)	228, 246, 354, 564, 795
DpnII	GATC	5 cut(s)	226, 244, 352, 562, 793
DraI	TTTAAA	1 cut(s)	837
DraIII	CACNNNGTG	1 cut(s)	917
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Eco47I	GGWCC	1 cut(s)	428
Eco57I	CTGAAG	3 cut(s)	162, 165, 485
EcoRII	CCWGG	1 cut(s)	424
FalI	AAGNNNNNCTT	4 cut(s)	530, 562, 690, 722
FauI	CCCGC	1 cut(s)	45
FbaI	TGATCA	2 cut(s)	226, 352
Fnu4HI	GCNGC	1 cut(s)	569
FokI	GGATG	2 cut(s)	578, 912
Fsp4HI	GCNGC	1 cut(s)	569
FspBI	CTAG	2 cut(s)	257, 687
GluI	GCNGC	1 cut(s)	569
GsuI	CTGGAG	1 cut(s)	732
HaeIII	GGCC	3 cut(s)	207, 740, 856
HapII	CCGG	3 cut(s)	302, 858, 891
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	157
HinfI	GANTC	4 cut(s)	80, 690, 920, 934
HpaII	CCGG	3 cut(s)	302, 858, 891
HphI	GGTGA	3 cut(s)	200, 394, 929
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	6 cut(s)	85, 184, 231, 474, 504, 939
Hpy188III	TCNNGA	6 cut(s)	356, 463, 719, 749, 797, 842
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	3 cut(s)	137, 431, 692
HpyCH4III	ACNGT	2 cut(s)	114, 188
HpyCH4IV	ACGT	1 cut(s)	899
HpyCH4V	TGCA	4 cut(s)	458, 497, 641, 667
HpyF10VI	GCNNNNNNNGC	1 cut(s)	577
HpyF3I	CTNAG	3 cut(s)	7, 692, 938
HpySE526I	ACGT	1 cut(s)	899
Ksp22I	TGATCA	2 cut(s)	226, 352
Kzo9I	GATC	5 cut(s)	226, 244, 352, 562, 793
Lsp1109I	GCAGC	1 cut(s)	555
MaeI	CTAG	2 cut(s)	257, 687
MaeII	ACGT	1 cut(s)	899
MaeIII	GTNAC	2 cut(s)	587, 941
MalI	GATC	5 cut(s)	228, 246, 354, 564, 795
MboI	GATC	5 cut(s)	226, 244, 352, 562, 793
MboII	GAAGA	7 cut(s)	23, 103, 344, 494, 656, 662, 764
MflI	RGATCY	1 cut(s)	793
MluCI	AATT	4 cut(s)	376, 476, 581, 613
MlyI	GAGTC	2 cut(s)	684, 929
MseI	TTAA	7 cut(s)	23, 161, 320, 381, 836, 887, 905
MslI	CAYNNNNRTG	1 cut(s)	360
MspI	CCGG	3 cut(s)	302, 858, 891
MspR9I	CCNGG	2 cut(s)	426, 858
Mva1269I	GAATGC	1 cut(s)	458
MvaI	CCWGG	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	577
NciI	CCSGG	1 cut(s)	858
NdeII	GATC	5 cut(s)	226, 244, 352, 562, 793
NlaIV	GGNNCC	1 cut(s)	206
NmuCI	GTSAC	1 cut(s)	941
NspI	RCATGY	1 cut(s)	365
PagI	TCATGA	2 cut(s)	355, 462
PctI	GAATGC	1 cut(s)	458
PfeI	GAWTC	2 cut(s)	80, 934
PflFI	GACNNNGTC	1 cut(s)	133
PfoI	TCCNGGA	1 cut(s)	424
PinAI	ACCGGT	1 cut(s)	890
PkrI	GCNGC	1 cut(s)	570
PleI	GAGTC	2 cut(s)	684, 928
PpsI	GAGTC	2 cut(s)	684, 928
Ppu21I	YACGTR	1 cut(s)	900
Psp6I	CCWGG	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	206
PspPI	GGNCC	3 cut(s)	205, 428, 855
PsuI	RGATCY	1 cut(s)	793
PsyI	GACNNNGTC	1 cut(s)	133
RsaI	GTAC	2 cut(s)	261, 898
RsaNI	GTAC	2 cut(s)	260, 897
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	7 cut(s)	23, 161, 320, 381, 836, 887, 905
SatI	GCNGC	1 cut(s)	569
Sau3AI	GATC	5 cut(s)	226, 244, 352, 562, 793
Sau96I	GGNCC	3 cut(s)	205, 428, 855
SchI	GAGTC	2 cut(s)	684, 929
ScrFI	CCNGG	2 cut(s)	426, 858
SfcI	CTRYAG	1 cut(s)	880
SinI	GGWCC	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	360
SpeI	ACTAGT	1 cut(s)	256
Sse9I	AATT	4 cut(s)	376, 476, 581, 613
SsiI	CCGC	1 cut(s)	38
SspI	AATATT	1 cut(s)	215
SspMI	CTAG	2 cut(s)	257, 687
StyD4I	CCNGG	2 cut(s)	424, 856
TaaI	ACNGT	2 cut(s)	114, 188
TaiI	ACGT	1 cut(s)	902
TaqI	TCGA	2 cut(s)	519, 932
TasI	AATT	4 cut(s)	376, 476, 581, 613
TatI	WGTACW	1 cut(s)	259
TfiI	GAWTC	2 cut(s)	80, 934
Tru1I	TTAA	7 cut(s)	23, 161, 320, 381, 836, 887, 905
Tru9I	TTAA	7 cut(s)	23, 161, 320, 381, 836, 887, 905
TscAI	CASTG	1 cut(s)	700
TseFI	GTSAC	1 cut(s)	941
TseI	GCWGC	1 cut(s)	568
Tsp45I	GTSAC	1 cut(s)	941
TspDTI	ATGAA	7 cut(s)	81, 189, 225, 451, 663, 768, 773
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	700
Tth111I	GACNNNGTC	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	428
XapI	RAATTY	2 cut(s)	376, 476
XceI	RCATGY	1 cut(s)	365
XspI	CTAG	2 cut(s)	257, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.