Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Forward (+)

29694592 .. 29694960

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0276000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGCAACGACATTTCCGGCGAGATGTTCGATTGGCTCCAGCGAGATTTTCGACGAGCTCCGGCGAGATGTTCGACGGGCTCGAACAAAGCGACGATGAAATTGAAATGGAGTCGTCTGTGGCTGATGCAGAGTCGGCGATTCGGGACGAGGAATTCAGGTGGCAGAGAGTGGAAAAGCTCTGCGAAGATGTGAAGCAGTTCGGCGAGGAAATGATTGACGATGGCTCTCTCGCCTCTATCTACGATTTCCGAATCGATAAATTTCAGGTGCATTGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

93

Amino Acids

11.0

Weight (kDa)

4.46

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	152, 260
AgsI	TTSAA	1 cut(s)	104
AluBI	AGCT	2 cut(s)	57, 178
AluI	AGCT	2 cut(s)	57, 178
Alw21I	GWGCWC	1 cut(s)	59
ApoI	RAATTY	2 cut(s)	152, 260
Asp700I	GAANNNNTTC	1 cut(s)	197
BanII	GRGCYC	2 cut(s)	59, 81
Bbv12I	GWGCWC	1 cut(s)	59
BccI	CCATC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	36
BmsI	GCATC	1 cut(s)	115
BpmI	CTGGAG	1 cut(s)	21
Bsa29I	ATCGAT	1 cut(s)	255
BseCI	ATCGAT	1 cut(s)	255
BshVI	ATCGAT	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	59
BsiSI	CCGG	2 cut(s)	16, 60
BslFI	GGGAC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	158
Bsp1286I	GDGCHC	2 cut(s)	59, 81
BspDI	ATCGAT	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	1 cut(s)	134
Bsu15I	ATCGAT	1 cut(s)	255
BsuTUI	ATCGAT	1 cut(s)	255
ClaI	ATCGAT	1 cut(s)	255
CviJI	RGCY	6 cut(s)	35, 57, 79, 122, 178, 225
CviKI_1	RGCY	6 cut(s)	35, 57, 79, 122, 178, 225
Ecl136II	GAGCTC	1 cut(s)	57
Eco24I	GRGCYC	2 cut(s)	59, 81
Eco53kI	GAGCTC	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	152
EcoT38I	GRGCYC	2 cut(s)	59, 81
FaqI	GGGAC	1 cut(s)	158
FriOI	GRGCYC	2 cut(s)	59, 81
GsuI	CTGGAG	1 cut(s)	21
HapII	CCGG	2 cut(s)	16, 60
HinfI	GANTC	4 cut(s)	110, 131, 139, 252
HpaII	CCGG	2 cut(s)	16, 60
Hpy188I	TCNGA	1 cut(s)	251
Hpy188III	TCNNGA	1 cut(s)	143
Hpy99I	CGWCG	3 cut(s)	55, 77, 95
HpyCH4V	TGCA	3 cut(s)	4, 128, 271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
LmnI	GCTCC	2 cut(s)	40, 62
LpnPI	CCDG	5 cut(s)	29, 51, 73, 142, 251
LweI	GCATC	1 cut(s)	115
MboII	GAAGA	1 cut(s)	197
MhlI	GDGCHC	2 cut(s)	59, 81
MluCI	AATT	3 cut(s)	99, 152, 260
MlyI	GAGTC	2 cut(s)	119, 140
MnlI	CCTC	3 cut(s)	142, 199, 244
MroXI	GAANNNNTTC	1 cut(s)	197
MspI	CCGG	2 cut(s)	16, 60
MwoI	GCNNNNNNNGC	1 cut(s)	134
NlaIV	GGNNCC	1 cut(s)	36
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 87
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	139, 252
PleI	GAGTC	2 cut(s)	118, 139
PpsI	GAGTC	2 cut(s)	118, 139
Psp124BI	GAGCTC	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	36
SacI	GAGCTC	1 cut(s)	59
SchI	GAGTC	2 cut(s)	119, 140
SduI	GDGCHC	2 cut(s)	59, 81
SetI	ASST	4 cut(s)	59, 161, 180, 270
SfaNI	GCATC	1 cut(s)	115
Sse9I	AATT	3 cut(s)	99, 152, 260
SstI	GAGCTC	1 cut(s)	59
TaqI	TCGA	5 cut(s)	28, 50, 72, 81, 255
TasI	AATT	3 cut(s)	99, 152, 260
TfiI	GAWTC	2 cut(s)	139, 252
TspDTI	ATGAA	1 cut(s)	111
XapI	RAATTY	2 cut(s)	152, 260
XmnI	GAANNNNTTC	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.