Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002075

Physical Location & Seq

Genomic Coordinates Forward (+)

11146692 .. 11149130

Gene Structure 2439 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G006970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTCTGCTGAAGGAGAACGGAGTGATGAGACCCCCTTTGATGATCTAATGGAACTAGTACAACAAATAGTTGCCTTTCACATGAGGCACAATGCCGAACCGGAAGTTGTTGACCTTTTAATGGAGGTGGAAGACCTTGATCTGTTAGTTGAGCATGTTGATAAGACAAATTTTAAGAGGACTTGTCTCTACCTCACCAGTTCGGCAAGATACCTTCCTGGACCAGATGATATGTTAGTTTTGGATATTGCATTCATGATATATCTGAAATTTGAAGAGTATCCAAATGCACTTCAGATTGCTCTTTTCCTCGACAATAAGGAGGTTTGTGCCGTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

113

Amino Acids

13.04

Weight (kDa)

4.23

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN1_RPN2_N	PF17781	9 - 109	2.3e-36	RPN1 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08140
fragaria_vesca	FvH4_2g12221 FvH4_2g12230 FvH4_5g27991 FvH4_5g28290 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_6g26640 FvH4_7g05781
rosa_chinensis	RchiOBHm_Chr2g0127201 RchiOBHm_Chr6g0255941 RchiOBHm_Chr6g0255951 RchiOBHm_Chr6g0255961
rosa_laevigata	RLG00000014798 RLG00000018972
rosa_multiflora	Rmu_co8466619.1_g000001 Rmu_sc0001598.1_g000009 Rmu_sc0001598.1_g000013 Rmu_ssc0000018.1_g000063
rosa_roxburghii	Rroxscaffold_2G00116290 Rroxscaffold_5G00361030
rosa_rugosa	Rorug02G0276000 Rorug02G0276100
rosa_samantha	Rh2AG326800 Rh2BG337200 Rh2CG314300 Rh2DG354200 Rh4DG207300 Rh4DG207400 Rh6AG150800 Rh6BG073800 Rh6BG073900 Rh6BG151600 Rh6DG135700
rosa_wichuraiana	Rw2G026510 Rw2G026550 Rw6G006970 Rw6G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	340
AcsI	RAATTY	2 cut(s)	169, 269
AcuI	CTGAAG	2 cut(s)	30, 278
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	1 cut(s)	275
AhlI	ACTAGT	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	217
Alw26I	GTCTC	2 cut(s)	23, 191
ApoI	RAATTY	2 cut(s)	169, 269
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	138
BceAI	ACGGC	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	219
BciVI	GTATCC	1 cut(s)	291
BcoDI	GTCTC	2 cut(s)	23, 191
BcuI	ACTAGT	1 cut(s)	55
BfaI	CTAG	1 cut(s)	56
BfuI	GTATCC	1 cut(s)	291
Bme1390I	CCNGG	1 cut(s)	219
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	23
BsaWI	WCCGGW	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseNI	ACTGG	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	2 cut(s)	23, 191
BsmI	GAATGC	1 cut(s)	251
Bso31I	GGTCTC	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	43, 139
BspHI	TCATGA	1 cut(s)	255
BspTNI	GGTCTC	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	198
BssMI	GATC	2 cut(s)	43, 139
Bst2UI	CCWGG	1 cut(s)	219
Bst6I	CTCTTC	1 cut(s)	270
BstKTI	GATC	2 cut(s)	46, 142
BstMAI	GTCTC	2 cut(s)	23, 191
BstMBI	GATC	2 cut(s)	43, 139
BstNI	CCWGG	1 cut(s)	219
BstNSI	RCATGY	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	217
BstV2I	GAAGAC	1 cut(s)	138
BsuI	GTATCC	1 cut(s)	291
CciI	TCATGA	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	59
CviAII	CATG	3 cut(s)	82, 155, 256
CviQI	GTAC	1 cut(s)	59
DpnI	GATC	2 cut(s)	45, 141
DpnII	GATC	2 cut(s)	43, 139
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco31I	GGTCTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	221
Eco57I	CTGAAG	2 cut(s)	30, 278
EcoRII	CCWGG	1 cut(s)	217
FaeI	CATG	3 cut(s)	85, 158, 259
FaiI	YATR	6 cut(s)	83, 156, 233, 257, 262, 340
FatI	CATG	3 cut(s)	81, 154, 255
FspBI	CTAG	1 cut(s)	56
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	3 cut(s)	85, 158, 259
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	2 cut(s)	267, 297
Hpy188III	TCNNGA	1 cut(s)	256
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	5, 224
HpyCH4V	TGCA	2 cut(s)	251, 290
Hsp92II	CATG	3 cut(s)	85, 158, 259
Kzo9I	GATC	2 cut(s)	43, 139
LpnPI	CCDG	5 cut(s)	114, 204, 211, 231, 237
MaeI	CTAG	1 cut(s)	56
MalI	GATC	2 cut(s)	45, 141
MboI	GATC	2 cut(s)	43, 139
MboII	GAAGA	2 cut(s)	143, 287
MluCI	AATT	2 cut(s)	169, 269
MnlI	CCTC	6 cut(s)	78, 118, 171, 203, 316, 320
MseI	TTAA	2 cut(s)	119, 174
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	219
NdeII	GATC	2 cut(s)	43, 139
NlaIII	CATG	3 cut(s)	85, 158, 259
NspI	RCATGY	1 cut(s)	158
PagI	TCATGA	1 cut(s)	255
PctI	GAATGC	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	217
PsiI	TTATAA	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	221
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	119, 174
Sau3AI	GATC	2 cut(s)	43, 139
Sau96I	GGNCC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	219
SetI	ASST	6 cut(s)	117, 129, 138, 195, 216, 327
SinI	GGWCC	1 cut(s)	221
SpeI	ACTAGT	1 cut(s)	55
Sse9I	AATT	2 cut(s)	169, 269
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	217
TaqI	TCGA	1 cut(s)	312
TasI	AATT	2 cut(s)	169, 269
TatI	WGTACW	1 cut(s)	58
Tru1I	TTAA	2 cut(s)	119, 174
Tru9I	TTAA	2 cut(s)	119, 174
TspDTI	ATGAA	1 cut(s)	244
TspGWI	ACGGA	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	2 cut(s)	169, 269
XceI	RCATGY	1 cut(s)	158
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.