AT4G13850

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002305
Physical Location & Seq
Forward (+)
8020713 .. 8022476
1764 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G13850.4

Sequence Viewer

Length: 477 bp
ATGGCTTTCTGTAACAAACTCGGTGGTCTATTGAGACAGAACATTTCTTCTAACGGAAATGTTCCGGTTACGTCTATGCTCGGATCTCTCCGGTTGATGTCTACCAAGCTTTTCATCGGAGGTCTCTCATGGGGAACCGATGACGCATCCTTAAGGGATGCTTTTGCTCACTTCGGTGACGTTGTTGATGCTAAAGTTATCGTTGATAGAGAGACAGGAAGATCAAGGGGGTTTGGATTTGTCAACTTCAATGATGAGGGTGCTGCAACTGCTGCCATATCAGAGATGGACGGAAAGGAACTGAATGGTCGTCACATCCGAGTGAATCCTGCTAATGATAGACCAAGTGCTCCACGGGCTTATGGAGGTGGTGGTGGATACAGTGGTGGAGGTGGAGGCTACGGAGGAGGTGGTGGTGGGTACGGAGGAGGAGGTGGTGGCTATGGAGGAGGTGGTGATGGTGGTGGTGGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000959 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009451 GO:0009628 GO:0009631 GO:0009651 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0017076 GO:0019219 GO:0019222 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034336 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043242 GO:0043244 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0060567 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090351 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

158

Amino Acids

15.7

Weight (kDa)

6.72

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 37 - 107 1.7e-23 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 101
AclWI GGATC 1 cut(s) 91
AfaI GTAC 1 cut(s) 422
AflII CTTAAG 1 cut(s) 151
AgsI TTSAA 1 cut(s) 250
AleI CACNNNNGTG 1 cut(s) 174
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
Alw21I GWGCWC 1 cut(s) 352
Alw26I GTCTC 3 cut(s) 28, 128, 206
AlwI GGATC 1 cut(s) 91
ApeKI GCWGC 2 cut(s) 263, 272
AsuHPI GGTGA 2 cut(s) 188, 467
BaeI ACNNNNGTAYC 2 cut(s) 370, 403
Bbv12I GWGCWC 1 cut(s) 352
BbvI GCAGC 2 cut(s) 250, 259
BccI CCATC 2 cut(s) 280, 452
BciVI GTATCC 1 cut(s) 371
BcoDI GTCTC 3 cut(s) 28, 128, 206
BfrI CTTAAG 1 cut(s) 151
BfuI GTATCC 1 cut(s) 371
BisI GCNGC 2 cut(s) 264, 273
BlsI GCNGC 2 cut(s) 265, 274
BmiI GGNNCC 1 cut(s) 136
BmsI GCATC 3 cut(s) 148, 155, 178
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 353
BsaWI WCCGGW 2 cut(s) 64, 90
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 3 cut(s) 146, 163, 315
BseRI GAGGAG 4 cut(s) 420, 441, 444, 462
BseXI GCAGC 2 cut(s) 250, 259
BsiHKAI GWGCWC 1 cut(s) 352
BsiSI CCGG 2 cut(s) 65, 91
BsmAI GTCTC 3 cut(s) 28, 128, 206
Bso31I GGTCTC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 352
Bsp143I GATC 2 cut(s) 83, 221
BspLI GGNNCC 1 cut(s) 136
BspPI GGATC 1 cut(s) 91
BspTI CTTAAG 1 cut(s) 151
BspTNI GGTCTC 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 2 cut(s) 83, 221
Bst4CI ACNGT 1 cut(s) 383
BstAFI CTTAAG 1 cut(s) 151
BstAPI GCANNNNNTGC 1 cut(s) 272
BstDSI CCRYGG 1 cut(s) 353
BstF5I GGATG 3 cut(s) 146, 163, 315
BstKTI GATC 2 cut(s) 86, 224
BstMAI GTCTC 3 cut(s) 28, 128, 206
BstMBI GATC 2 cut(s) 83, 221
BstMWI GCNNNNNNNGC 3 cut(s) 269, 272, 356
BstV1I GCAGC 2 cut(s) 250, 259
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BsuI GTATCC 1 cut(s) 371
BtgI CCRYGG 1 cut(s) 353
BtsCI GGATG 3 cut(s) 146, 163, 315
BtsIMutI CAGTG 1 cut(s) 388
CseI GACGC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 421
CspCI CAANNNNNGTGG 2 cut(s) 4, 39
CviAII CATG 1 cut(s) 129
CviJI RGCY 5 cut(s) 5, 109, 359, 399, 441
CviKI_1 RGCY 5 cut(s) 5, 109, 359, 399, 441
CviQI GTAC 1 cut(s) 421
DpnI GATC 2 cut(s) 85, 223
DpnII GATC 2 cut(s) 83, 221
Eco31I GGTCTC 1 cut(s) 128
FaeI CATG 1 cut(s) 132
FaiI YATR 5 cut(s) 77, 130, 278, 363, 444
FalI AAGNNNNNCTT 2 cut(s) 145, 177
FatI CATG 1 cut(s) 128
FblI GTMKAC 1 cut(s) 101
Fnu4HI GCNGC 2 cut(s) 264, 273
FokI GGATG 3 cut(s) 133, 170, 302
Fsp4HI GCNGC 2 cut(s) 264, 273
GluI GCNGC 2 cut(s) 264, 273
HapII CCGG 2 cut(s) 65, 91
HgaI GACGC 1 cut(s) 152
Hin1II CATG 1 cut(s) 132
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 1 cut(s) 325
HpaII CCGG 2 cut(s) 65, 91
HphI GGTGA 2 cut(s) 188, 467
Hpy166II GTNNAC 2 cut(s) 102, 244
Hpy188I TCNGA 4 cut(s) 83, 119, 283, 320
Hpy8I GTNNAC 2 cut(s) 102, 244
HpyCH4III ACNGT 1 cut(s) 383
HpyCH4IV ACGT 2 cut(s) 71, 180
HpyCH4V TGCA 1 cut(s) 266
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 272, 356
HpySE526I ACGT 2 cut(s) 71, 180
Hsp92II CATG 1 cut(s) 132
Kzo9I GATC 2 cut(s) 83, 221
LmnI GCTCC 1 cut(s) 355
LpnPI CCDG 4 cut(s) 78, 104, 201, 342
Lsp1109I GCAGC 2 cut(s) 250, 259
LweI GCATC 3 cut(s) 148, 155, 178
MaeII ACGT 2 cut(s) 71, 180
MaeIII GTNAC 4 cut(s) 11, 67, 176, 311
MalI GATC 2 cut(s) 85, 223
MboI GATC 2 cut(s) 83, 221
MboII GAAGA 2 cut(s) 39, 231
MflI RGATCY 1 cut(s) 83
MhlI GDGCHC 1 cut(s) 352
MseI TTAA 1 cut(s) 152
MslI CAYNNNNRTG 2 cut(s) 174, 320
MspCI CTTAAG 1 cut(s) 151
MspI CCGG 2 cut(s) 65, 91
MwoI GCNNNNNNNGC 3 cut(s) 269, 272, 356
NdeII GATC 2 cut(s) 83, 221
NlaIII CATG 1 cut(s) 132
NlaIV GGNNCC 1 cut(s) 136
NmuCI GTSAC 2 cut(s) 176, 311
OliI CACNNNNGTG 1 cut(s) 174
PcsI WCGNNNNNNNCGW 1 cut(s) 316
PfeI GAWTC 1 cut(s) 325
PkrI GCNGC 2 cut(s) 265, 274
PspN4I GGNNCC 1 cut(s) 136
PsuI RGATCY 1 cut(s) 83
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
RseI CAYNNNNRTG 2 cut(s) 174, 320
SaqAI TTAA 1 cut(s) 152
SatI GCNGC 2 cut(s) 264, 273
Sau3AI GATC 2 cut(s) 83, 221
SduI GDGCHC 1 cut(s) 352
SetI ASST 9 cut(s) 74, 111, 124, 183, 370, 394, 412, 436, 454
SfaNI GCATC 3 cut(s) 148, 155, 178
SmiMI CAYNNNNRTG 2 cut(s) 174, 320
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 383
TaiI ACGT 2 cut(s) 74, 183
TfiI GAWTC 1 cut(s) 325
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TscAI CASTG 1 cut(s) 388
TseFI GTSAC 2 cut(s) 176, 311
TseI GCWGC 2 cut(s) 263, 272
Tsp45I GTSAC 2 cut(s) 176, 311
TspDTI ATGAA 1 cut(s) 103
TspGWI ACGGA 4 cut(s) 69, 306, 417, 438
TspRI CASTG 1 cut(s) 388
Vha464I CTTAAG 1 cut(s) 151
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.