Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Reverse (-)

4138487 .. 4141364

Gene Structure 2878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16335

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGTTATGGGCCCAAGTTTGGCCTCTCGGGTTTGCCTTGTAGATAATAGTAAAAACCGAACCCTAAATTGGGAAATTGAGCTGAGAAGTCCTCGTGGCCCATTTAAACCCCCGTCTCGCCCAAACCCTCAAACCCCCCACCTTTGTGTTTTCACAAAAACCCTCTCGTCTCTATTAACAAAATCCCCAATTTCTGTCTTTCAGCCTCTGCTACTTCATTTAGTAGTATCATCAGTACAAGCTGCGATGGCGTTCTTGAGTAAATTTGGCAATATACTTAGGCAGACCGCAACCAGGCAGATCAGATCTGAATTGGTTCCTTCCAAGCCGTCGATTTTTCAGGCGATAAGATGCATGTCAACTGGGCCAAGTTCTAAACTATTTATTGGAGGTGTGTCATTTCAGAGTGATGAGCAAAGTTTGAGGGAAGAATTTGCCAAATATGGTGAAGTTGTTGATGTAAGAATCATCACAGACCGTGACACTGGTAGATCGAGAGGCTTTGGATTCGTTACTTACACATCTAGCGAGGAGGCATCAAGTGCCATCCAGGCCTTGGATGGTCAGGAGCTTCATGGCCGCCGCGTCAGGGTGAATTATGCTACTGATAGGCCTCGGACTAACTTTGGAGGAGGTGGTTATGGTGGTGATGGTGGTTACCCGAGAGGTGGTGGAGGGTATGGTGGTGGTGGTGGCGGTTATGGAGGCGGCGGTTATGGAGGTGGCAGCTACGGTTCGGGGAACTCTGGTGGTGGATACGGTGGAAGTGGAGTTGGCTACAACAGCGGGGGCACTTTTGATAATGCTAGCACTGGTGGTTTTGGTGGTACTGACAACAGCTTTTCCACTGGTGGAGCTCAATTTGGAGAGGACAAAAGTGGCTTCGAAGAGCCATTAGAAGGAAACAATAGGGATGATGATGACACTGCAGACTTCGAAAAAAGGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

316

Amino Acids

33.2

Weight (kDa)

7.69

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	127 - 197	1.2e-21	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	556
AccII	CGCG	1 cut(s)	585
AciI	CCGC	7 cut(s)	288, 580, 583, 696, 708, 711, 786
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	2 cut(s)	263, 431
AfaI	GTAC	2 cut(s)	237, 829
AfiI	CCNNNNNNNGG	8 cut(s)	19, 69, 70, 294, 556, 589, 668, 899
AjnI	CCWGG	2 cut(s)	293, 549
AjuI	GAANNNNNNNTTGG	2 cut(s)	52, 84
AleI	CACNNNNGTG	1 cut(s)	144
AluBI	AGCT	6 cut(s)	82, 242, 571, 729, 840, 857
AluI	AGCT	6 cut(s)	82, 242, 571, 729, 840, 857
Alw21I	GWGCWC	1 cut(s)	859
Alw26I	GTCTC	2 cut(s)	120, 174
AlwNI	CAGNNNCTG	1 cut(s)	208
Ama87I	CYCGRG	2 cut(s)	27, 661
AoxI	GGCC	8 cut(s)	10, 21, 97, 365, 552, 577, 611, 945
ApaI	GGGCCC	1 cut(s)	14
ApeKI	GCWGC	2 cut(s)	242, 726
ApoI	RAATTY	2 cut(s)	263, 431
Asp700I	GAANNNNTTC	1 cut(s)	315
AspS9I	GGNCC	5 cut(s)	10, 11, 98, 365, 945
AsuHPI	GGTGA	3 cut(s)	458, 604, 659
AsuII	TTCGAA	2 cut(s)	885, 936
AsuNHI	GCTAGC	1 cut(s)	806
AvaI	CYCGRG	2 cut(s)	27, 661
BaeGI	GKGCMC	2 cut(s)	14, 794
BanII	GRGCYC	2 cut(s)	14, 859
BauI	CACGAG	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	859
BbvI	GCAGC	2 cut(s)	229, 738
BccI	CCATC	4 cut(s)	241, 554, 554, 644
BceAI	ACGGC	1 cut(s)	313
BciT130I	CCWGG	2 cut(s)	295, 551
BciVI	GTATCC	1 cut(s)	749
BcoDI	GTCTC	2 cut(s)	120, 174
BfaI	CTAG	2 cut(s)	525, 807
BfmI	CTRYAG	1 cut(s)	927
BfuI	GTATCC	1 cut(s)	749
BglI	GCCNNNNNGGC	1 cut(s)	551
BglII	AGATCT	1 cut(s)	305
BisI	GCNGC	5 cut(s)	243, 580, 583, 709, 727
BlsI	GCNGC	5 cut(s)	244, 581, 584, 710, 728
Bme1390I	CCNGG	2 cut(s)	295, 551
BmeT110I	CYCGRG	2 cut(s)	27, 661
BmgT120I	GGNCC	5 cut(s)	10, 11, 98, 365, 945
BmiI	GGNNCC	2 cut(s)	12, 318
BmrFI	CCNGG	2 cut(s)	295, 551
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	2 cut(s)	341, 545
BmtI	GCTAGC	1 cut(s)	810
BmuI	ACTGGG	1 cut(s)	372
BplI	GAGNNNNNCTC	2 cut(s)	76, 108
Bpu14I	TTCGAA	2 cut(s)	885, 936
BpuEI	CTTGAG	1 cut(s)	277
BsaJI	CCNNGG	2 cut(s)	555, 614
Bsc4I	CCNNNNNNNGG	8 cut(s)	19, 69, 70, 294, 556, 589, 668, 899
Bse1I	ACTGG	4 cut(s)	367, 490, 817, 853
BseBI	CCWGG	2 cut(s)	295, 551
BseDI	CCNNGG	2 cut(s)	555, 614
BseGI	GGATG	3 cut(s)	546, 565, 919
BseLI	CCNNNNNNNGG	8 cut(s)	19, 69, 70, 294, 556, 589, 668, 899
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	4 cut(s)	367, 490, 817, 853
BseRI	GAGGAG	2 cut(s)	545, 645
BseSI	GKGCMC	2 cut(s)	14, 794
BseXI	GCAGC	2 cut(s)	229, 738
Bsh1236I	CGCG	1 cut(s)	585
BshFI	GGCC	8 cut(s)	12, 23, 99, 367, 554, 579, 613, 947
BsiHKAI	GWGCWC	1 cut(s)	859
BsiHKCI	CYCGRG	2 cut(s)	27, 661
BslI	CCNNNNNNNGG	8 cut(s)	19, 69, 70, 294, 556, 589, 668, 899
BsmAI	GTCTC	2 cut(s)	120, 174
BsmBI	CGTCTC	2 cut(s)	120, 174
BsnI	GGCC	8 cut(s)	12, 23, 99, 367, 554, 579, 613, 947
BsoBI	CYCGRG	2 cut(s)	27, 661
Bsp119I	TTCGAA	2 cut(s)	885, 936
Bsp120I	GGGCCC	1 cut(s)	10
Bsp1286I	GDGCHC	3 cut(s)	14, 794, 859
Bsp143I	GATC	3 cut(s)	300, 305, 491
BspACI	CCGC	7 cut(s)	288, 580, 583, 696, 708, 711, 786
BspANI	GGCC	8 cut(s)	12, 23, 99, 367, 554, 579, 613, 947
BspCNI	CTCAG	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	585
BspLI	GGNNCC	2 cut(s)	12, 318
BspMAI	CTGCAG	1 cut(s)	931
BspOI	GCTAGC	1 cut(s)	810
BspQI	GCTCTTC	1 cut(s)	882
BspT104I	TTCGAA	2 cut(s)	885, 936
BsrI	ACTGG	4 cut(s)	367, 490, 817, 853
BssECI	CCNNGG	2 cut(s)	555, 614
BssMI	GATC	3 cut(s)	300, 305, 491
BssSI	CACGAG	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	555
Bst2BI	CACGAG	1 cut(s)	93
Bst2UI	CCWGG	2 cut(s)	295, 551
Bst4CI	ACNGT	3 cut(s)	479, 734, 761
Bst6I	CTCTTC	1 cut(s)	882
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstBI	TTCGAA	2 cut(s)	885, 936
BstC8I	GCNNGC	1 cut(s)	808
BstDEI	CTNAG	2 cut(s)	83, 278
BstEII	GGTNACC	1 cut(s)	656
BstF5I	GGATG	3 cut(s)	546, 565, 919
BstFNI	CGCG	1 cut(s)	585
BstKTI	GATC	3 cut(s)	303, 308, 494
BstMAI	GTCTC	2 cut(s)	120, 174
BstMBI	GATC	3 cut(s)	300, 305, 491
BstMWI	GCNNNNNNNGC	4 cut(s)	248, 542, 551, 783
BstNI	CCWGG	2 cut(s)	295, 551
BstNSI	RCATGY	1 cut(s)	358
BstPI	GGTNACC	1 cut(s)	656
BstSCI	CCNGG	2 cut(s)	293, 549
BstSFI	CTRYAG	1 cut(s)	927
BstSLI	GKGCMC	2 cut(s)	14, 794
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	2 cut(s)	229, 738
BstX2I	RGATCY	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	305
BsuI	GTATCC	1 cut(s)	749
BsuRI	GGCC	8 cut(s)	12, 23, 99, 367, 554, 579, 613, 947
BtgZI	GCGATG	1 cut(s)	260
BtsCI	GGATG	3 cut(s)	546, 565, 919
BtsI	GCAGTG	1 cut(s)	924
BtsIMutI	CAGTG	4 cut(s)	483, 810, 846, 924
Cac8I	GCNNGC	1 cut(s)	808
CaiI	CAGNNNCTG	1 cut(s)	208
Cfr13I	GGNCC	5 cut(s)	10, 11, 98, 365, 945
CseI	GACGC	1 cut(s)	574
Csp6I	GTAC	2 cut(s)	236, 828
CviAII	CATG	2 cut(s)	355, 575
CviQI	GTAC	2 cut(s)	236, 828
DdeI	CTNAG	2 cut(s)	83, 278
DpnI	GATC	3 cut(s)	302, 307, 493
DpnII	GATC	3 cut(s)	300, 305, 491
DraI	TTTAAA	1 cut(s)	106
EaeI	YGGCCR	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	882
EarI	CTCTTC	1 cut(s)	882
Ecl136II	GAGCTC	1 cut(s)	857
Eco130I	CCWWGG	1 cut(s)	555
Eco147I	AGGCCT	2 cut(s)	554, 613
Eco24I	GRGCYC	2 cut(s)	14, 859
Eco53kI	GAGCTC	1 cut(s)	857
Eco88I	CYCGRG	2 cut(s)	27, 661
Eco91I	GGTNACC	1 cut(s)	656
EcoICRI	GAGCTC	1 cut(s)	857
EcoO109I	RGGNCCY	1 cut(s)	945
EcoO65I	GGTNACC	1 cut(s)	656
EcoRII	CCWGG	2 cut(s)	293, 549
EcoT14I	CCWWGG	1 cut(s)	555
EcoT22I	ATGCAT	1 cut(s)	356
EcoT38I	GRGCYC	2 cut(s)	14, 859
ErhI	CCWWGG	1 cut(s)	555
Esp3I	CGTCTC	2 cut(s)	120, 174
FaeI	CATG	2 cut(s)	358, 578
FatI	CATG	2 cut(s)	354, 574
FauI	CCCGC	1 cut(s)	779
Fnu4HI	GCNGC	5 cut(s)	243, 580, 583, 709, 727
FokI	GGATG	3 cut(s)	533, 572, 926
FriOI	GRGCYC	2 cut(s)	14, 859
Fsp4HI	GCNGC	5 cut(s)	243, 580, 583, 709, 727
FspBI	CTAG	2 cut(s)	525, 807
GluI	GCNGC	5 cut(s)	243, 580, 583, 709, 727
HaeIII	GGCC	8 cut(s)	12, 23, 99, 367, 554, 579, 613, 947
HgaI	GACGC	1 cut(s)	574
Hin1II	CATG	2 cut(s)	358, 578
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HinfI	GANTC	2 cut(s)	465, 507
HphI	GGTGA	3 cut(s)	458, 604, 659
Hpy166II	GTNNAC	1 cut(s)	360
Hpy188I	TCNGA	4 cut(s)	305, 310, 405, 618
Hpy188III	TCNNGA	3 cut(s)	256, 495, 566
Hpy8I	GTNNAC	1 cut(s)	360
Hpy99I	CGWCG	1 cut(s)	334
HpyAV	CCTTC	2 cut(s)	330, 893
HpyCH4III	ACNGT	3 cut(s)	479, 734, 761
HpyCH4V	TGCA	2 cut(s)	354, 929
HpyF10VI	GCNNNNNNNGC	4 cut(s)	248, 542, 551, 783
HpyF3I	CTNAG	2 cut(s)	83, 278
Hsp92II	CATG	2 cut(s)	358, 578
Kzo9I	GATC	3 cut(s)	300, 305, 491
LguI	GCTCTTC	1 cut(s)	882
LmnI	GCTCC	2 cut(s)	568, 854
Lsp1109I	GCAGC	2 cut(s)	229, 738
LweI	GCATC	2 cut(s)	341, 545
MaeI	CTAG	2 cut(s)	525, 807
MaeIII	GTNAC	3 cut(s)	479, 511, 656
MalI	GATC	3 cut(s)	302, 307, 493
MboI	GATC	3 cut(s)	300, 305, 491
MboII	GAAGA	2 cut(s)	440, 899
MflI	RGATCY	1 cut(s)	305
MhlI	GDGCHC	3 cut(s)	14, 794, 859
MluCI	AATT	8 cut(s)	67, 75, 189, 263, 311, 431, 595, 860
Mph1103I	ATGCAT	1 cut(s)	356
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	2 cut(s)	105, 176
MslI	CAYNNNNRTG	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	786
MspR9I	CCNGG	2 cut(s)	295, 551
MvaI	CCWGG	2 cut(s)	295, 551
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	4 cut(s)	248, 542, 551, 783
NdeII	GATC	3 cut(s)	300, 305, 491
NheI	GCTAGC	1 cut(s)	806
NlaIII	CATG	2 cut(s)	358, 578
NlaIV	GGNNCC	2 cut(s)	12, 318
NmuCI	GTSAC	1 cut(s)	479
NsiI	ATGCAT	1 cut(s)	356
NspI	RCATGY	1 cut(s)	358
NspV	TTCGAA	2 cut(s)	885, 936
OliI	CACNNNNGTG	1 cut(s)	144
PceI	AGGCCT	2 cut(s)	554, 613
PciSI	GCTCTTC	1 cut(s)	882
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	465, 507
PflMI	CCANNNNNTGG	1 cut(s)	556
PkrI	GCNGC	5 cut(s)	244, 581, 584, 710, 728
Psp124BI	GAGCTC	1 cut(s)	859
Psp6I	CCWGG	2 cut(s)	293, 549
PspEI	GGTNACC	1 cut(s)	656
PspGI	CCWGG	2 cut(s)	293, 549
PspN4I	GGNNCC	2 cut(s)	12, 318
PspOMI	GGGCCC	1 cut(s)	10
PspPI	GGNCC	5 cut(s)	10, 11, 98, 365, 945
PstI	CTGCAG	1 cut(s)	931
PstNI	CAGNNNCTG	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	305
RsaI	GTAC	2 cut(s)	237, 829
RsaNI	GTAC	2 cut(s)	236, 828
RseI	CAYNNNNRTG	1 cut(s)	144
SacI	GAGCTC	1 cut(s)	859
SapI	GCTCTTC	1 cut(s)	882
SaqAI	TTAA	2 cut(s)	105, 176
SatI	GCNGC	5 cut(s)	243, 580, 583, 709, 727
Sau3AI	GATC	3 cut(s)	300, 305, 491
Sau96I	GGNCC	5 cut(s)	10, 11, 98, 365, 945
ScrFI	CCNGG	2 cut(s)	295, 551
SduI	GDGCHC	3 cut(s)	14, 794, 859
SfaNI	GCATC	2 cut(s)	341, 545
SfcI	CTRYAG	1 cut(s)	927
SfuI	TTCGAA	2 cut(s)	885, 936
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	8 cut(s)	67, 75, 189, 263, 311, 431, 595, 860
SseBI	AGGCCT	2 cut(s)	554, 613
SsiI	CCGC	7 cut(s)	288, 580, 583, 696, 708, 711, 786
SspMI	CTAG	2 cut(s)	525, 807
SstI	GAGCTC	1 cut(s)	859
StuI	AGGCCT	2 cut(s)	554, 613
StyD4I	CCNGG	2 cut(s)	293, 549
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	3 cut(s)	479, 734, 761
TaqI	TCGA	4 cut(s)	332, 494, 885, 936
TasI	AATT	8 cut(s)	67, 75, 189, 263, 311, 431, 595, 860
TatI	WGTACW	1 cut(s)	235
TauI	GCSGC	3 cut(s)	582, 585, 711
TfiI	GAWTC	2 cut(s)	465, 507
Tru1I	TTAA	2 cut(s)	105, 176
Tru9I	TTAA	2 cut(s)	105, 176
TscAI	CASTG	4 cut(s)	490, 817, 853, 931
TseFI	GTSAC	1 cut(s)	479
TseI	GCWGC	2 cut(s)	242, 726
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	2 cut(s)	206, 563
TspRI	CASTG	4 cut(s)	490, 817, 853, 931
Van91I	CCANNNNNTGG	1 cut(s)	556
XapI	RAATTY	2 cut(s)	263, 431
XceI	RCATGY	1 cut(s)	358
XcmI	CCANNNNNNNNNTGG	2 cut(s)	553, 557
XmnI	GAANNNNTTC	1 cut(s)	315
XspI	CTAG	2 cut(s)	525, 807
Zsp2I	ATGCAT	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.