Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Reverse (-)

3725176 .. 3727677

Gene Structure 2502 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG055500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCGTTCTTGAGTAAATTTGGCAATATACTTAGGCAGACCACCGCAACCAGGCAGATCAGATCTGAATTGGCTCCTTCCAAGCCGTCGATTTTTCAGGCCATAAGATGCATGTCAACTGGGCCAAGTTCTAAACTATTTATTGGAGGTGTGTCATTTCAGAGTGATGAGCAAAGTTTGAGGGAAGAATTTGCCAAATATGGTGAAGTTGTTGATGTAAGAATCATCACAGACCGTGACACTGGTAGATCGAGAGGCTTTGGATTCGTTACTTACACATCTAGCGAGGAGGCATCAAGTGCCATCCAGGCCTTGGATGGTCAGGAGCTTCATGGCCGCCGCGTCAGGGTGAATTATGCTACTGACAGGCCTCGGACTAACTTTGGAGGAGGTGGTTATGGTGGTGATGGTGGTTACTCGAGAGGTGGTGGAGGATATGGTGGTGGTGGTGGAGGTGGGGGTTATGGAGGTGGCAGCTATGGTTCTGGGAACTCTGGTGGTGGATACGGTGGAAGTGGAGTTGGCTACAACAGCGGTGGTACTTTTGATAATGCTAGCACTGGTGGTTTTGGTGGTACTGACAACAGCTTTTCTGCTGGTGGAGCTCAATTTGGAGAGGACAAAAGTGGCTTCGATGAGCCATTAGAAGGAAACAATAGGGATGATGATGACACTGCAGACTTCGAAAAAAGGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

232

Amino Acids

23.93

Weight (kDa)

5.02

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	46 - 116	7e-22	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	313
AccII	CGCG	1 cut(s)	342
AciI	CCGC	4 cut(s)	45, 337, 340, 534
AcoI	YGGCCR	1 cut(s)	334
AcsI	RAATTY	2 cut(s)	17, 188
AfaI	GTAC	2 cut(s)	541, 577
AfiI	CCNNNNNNNGG	4 cut(s)	51, 313, 346, 647
AjnI	CCWGG	2 cut(s)	50, 306
AluBI	AGCT	4 cut(s)	328, 477, 588, 605
AluI	AGCT	4 cut(s)	328, 477, 588, 605
Alw21I	GWGCWC	1 cut(s)	607
Ama87I	CYCGRG	1 cut(s)	418
AoxI	GGCC	6 cut(s)	99, 122, 309, 334, 368, 693
ApeKI	GCWGC	1 cut(s)	474
ApoI	RAATTY	2 cut(s)	17, 188
AspS9I	GGNCC	2 cut(s)	122, 693
AsuHPI	GGTGA	3 cut(s)	215, 361, 416
AsuII	TTCGAA	1 cut(s)	684
AsuNHI	GCTAGC	1 cut(s)	554
AvaI	CYCGRG	1 cut(s)	418
BanII	GRGCYC	1 cut(s)	607
Bbv12I	GWGCWC	1 cut(s)	607
BbvI	GCAGC	1 cut(s)	486
BccI	CCATC	3 cut(s)	311, 311, 401
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	2 cut(s)	52, 308
BciVI	GTATCC	1 cut(s)	497
BfaI	CTAG	2 cut(s)	282, 555
BfmI	CTRYAG	1 cut(s)	675
BfuI	GTATCC	1 cut(s)	497
BglI	GCCNNNNNGGC	1 cut(s)	308
BglII	AGATCT	1 cut(s)	62
BisI	GCNGC	3 cut(s)	337, 340, 475
BlsI	GCNGC	3 cut(s)	338, 341, 476
Bme1390I	CCNGG	2 cut(s)	52, 308
BmeT110I	CYCGRG	1 cut(s)	418
BmgT120I	GGNCC	2 cut(s)	122, 693
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	2 cut(s)	52, 308
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	2 cut(s)	98, 302
BmtI	GCTAGC	1 cut(s)	558
BmuI	ACTGGG	1 cut(s)	129
Bpu14I	TTCGAA	1 cut(s)	684
BpuEI	CTTGAG	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	312, 371
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 313, 346, 647
Bse1I	ACTGG	3 cut(s)	124, 247, 565
BseBI	CCWGG	2 cut(s)	52, 308
BseDI	CCNNGG	2 cut(s)	312, 371
BseGI	GGATG	3 cut(s)	303, 322, 667
BseLI	CCNNNNNNNGG	4 cut(s)	51, 313, 346, 647
BseNI	ACTGG	3 cut(s)	124, 247, 565
BseRI	GAGGAG	2 cut(s)	302, 402
BseXI	GCAGC	1 cut(s)	486
Bsh1236I	CGCG	1 cut(s)	342
BshFI	GGCC	6 cut(s)	101, 124, 311, 336, 370, 695
BsiHKAI	GWGCWC	1 cut(s)	607
BsiHKCI	CYCGRG	1 cut(s)	418
BslI	CCNNNNNNNGG	4 cut(s)	51, 313, 346, 647
BsnI	GGCC	6 cut(s)	101, 124, 311, 336, 370, 695
BsoBI	CYCGRG	1 cut(s)	418
Bsp119I	TTCGAA	1 cut(s)	684
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp143I	GATC	3 cut(s)	57, 62, 248
BspACI	CCGC	4 cut(s)	45, 337, 340, 534
BspANI	GGCC	6 cut(s)	101, 124, 311, 336, 370, 695
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	679
BspOI	GCTAGC	1 cut(s)	558
BspT104I	TTCGAA	1 cut(s)	684
BsrI	ACTGG	3 cut(s)	124, 247, 565
BssECI	CCNNGG	2 cut(s)	312, 371
BssMI	GATC	3 cut(s)	57, 62, 248
BssT1I	CCWWGG	1 cut(s)	312
Bst2UI	CCWGG	2 cut(s)	52, 308
Bst4CI	ACNGT	2 cut(s)	236, 509
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstBI	TTCGAA	1 cut(s)	684
BstC8I	GCNNGC	1 cut(s)	556
BstDEI	CTNAG	1 cut(s)	32
BstF5I	GGATG	3 cut(s)	303, 322, 667
BstFNI	CGCG	1 cut(s)	342
BstKTI	GATC	3 cut(s)	60, 65, 251
BstMBI	GATC	3 cut(s)	57, 62, 248
BstMWI	GCNNNNNNNGC	4 cut(s)	299, 308, 531, 602
BstNI	CCWGG	2 cut(s)	52, 308
BstNSI	RCATGY	1 cut(s)	115
BstSCI	CCNGG	2 cut(s)	50, 306
BstSFI	CTRYAG	1 cut(s)	675
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	486
BstX2I	RGATCY	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	62
BsuI	GTATCC	1 cut(s)	497
BsuRI	GGCC	6 cut(s)	101, 124, 311, 336, 370, 695
BtsCI	GGATG	3 cut(s)	303, 322, 667
BtsI	GCAGTG	1 cut(s)	672
BtsIMutI	CAGTG	3 cut(s)	240, 558, 672
Cac8I	GCNNGC	1 cut(s)	556
Cfr13I	GGNCC	2 cut(s)	122, 693
CseI	GACGC	1 cut(s)	331
Csp6I	GTAC	2 cut(s)	540, 576
CspCI	CAANNNNNGTGG	2 cut(s)	517, 552
CviAII	CATG	2 cut(s)	112, 332
CviQI	GTAC	2 cut(s)	540, 576
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	3 cut(s)	59, 64, 250
DpnII	GATC	3 cut(s)	57, 62, 248
EaeI	YGGCCR	1 cut(s)	334
Ecl136II	GAGCTC	1 cut(s)	605
Eco130I	CCWWGG	1 cut(s)	312
Eco147I	AGGCCT	2 cut(s)	311, 370
Eco24I	GRGCYC	1 cut(s)	607
Eco53kI	GAGCTC	1 cut(s)	605
Eco88I	CYCGRG	1 cut(s)	418
EcoICRI	GAGCTC	1 cut(s)	605
EcoO109I	RGGNCCY	1 cut(s)	693
EcoRII	CCWGG	2 cut(s)	50, 306
EcoT14I	CCWWGG	1 cut(s)	312
EcoT22I	ATGCAT	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	2 cut(s)	115, 335
FatI	CATG	2 cut(s)	111, 331
Fnu4HI	GCNGC	3 cut(s)	337, 340, 475
FokI	GGATG	3 cut(s)	290, 329, 674
FriOI	GRGCYC	1 cut(s)	607
Fsp4HI	GCNGC	3 cut(s)	337, 340, 475
FspBI	CTAG	2 cut(s)	282, 555
GluI	GCNGC	3 cut(s)	337, 340, 475
HaeIII	GGCC	6 cut(s)	101, 124, 311, 336, 370, 695
HgaI	GACGC	1 cut(s)	331
Hin1II	CATG	2 cut(s)	115, 335
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	2 cut(s)	222, 264
HphI	GGTGA	3 cut(s)	215, 361, 416
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	4 cut(s)	62, 67, 162, 375
Hpy188III	TCNNGA	4 cut(s)	10, 252, 323, 420
Hpy8I	GTNNAC	1 cut(s)	117
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	2 cut(s)	87, 641
HpyCH4III	ACNGT	2 cut(s)	236, 509
HpyCH4V	TGCA	2 cut(s)	111, 677
HpyF10VI	GCNNNNNNNGC	4 cut(s)	299, 308, 531, 602
HpyF3I	CTNAG	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	115, 335
Kzo9I	GATC	3 cut(s)	57, 62, 248
LmnI	GCTCC	3 cut(s)	79, 325, 602
Lsp1109I	GCAGC	1 cut(s)	486
LweI	GCATC	2 cut(s)	98, 302
MaeI	CTAG	2 cut(s)	282, 555
MaeIII	GTNAC	3 cut(s)	236, 268, 413
MalI	GATC	3 cut(s)	59, 64, 250
MboI	GATC	3 cut(s)	57, 62, 248
MboII	GAAGA	1 cut(s)	197
MflI	RGATCY	1 cut(s)	62
MhlI	GDGCHC	1 cut(s)	607
MluCI	AATT	5 cut(s)	17, 68, 188, 352, 608
Mph1103I	ATGCAT	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	534
MspR9I	CCNGG	2 cut(s)	52, 308
MvaI	CCWGG	2 cut(s)	52, 308
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	4 cut(s)	299, 308, 531, 602
NdeII	GATC	3 cut(s)	57, 62, 248
NheI	GCTAGC	1 cut(s)	554
NlaIII	CATG	2 cut(s)	115, 335
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	236
NsiI	ATGCAT	1 cut(s)	113
NspI	RCATGY	1 cut(s)	115
NspV	TTCGAA	1 cut(s)	684
PaeR7I	CTCGAG	1 cut(s)	418
PceI	AGGCCT	2 cut(s)	311, 370
PfeI	GAWTC	2 cut(s)	222, 264
PflMI	CCANNNNNTGG	1 cut(s)	313
PkrI	GCNGC	3 cut(s)	338, 341, 476
Psp124BI	GAGCTC	1 cut(s)	607
Psp6I	CCWGG	2 cut(s)	50, 306
PspGI	CCWGG	2 cut(s)	50, 306
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	2 cut(s)	122, 693
PstI	CTGCAG	1 cut(s)	679
PsuI	RGATCY	1 cut(s)	62
RsaI	GTAC	2 cut(s)	541, 577
RsaNI	GTAC	2 cut(s)	540, 576
SacI	GAGCTC	1 cut(s)	607
SatI	GCNGC	3 cut(s)	337, 340, 475
Sau3AI	GATC	3 cut(s)	57, 62, 248
Sau96I	GGNCC	2 cut(s)	122, 693
ScrFI	CCNGG	2 cut(s)	52, 308
SduI	GDGCHC	1 cut(s)	607
SetI	ASST	9 cut(s)	151, 330, 394, 427, 457, 472, 479, 590, 607
SfaNI	GCATC	2 cut(s)	98, 302
SfcI	CTRYAG	1 cut(s)	675
Sfr274I	CTCGAG	1 cut(s)	418
SfuI	TTCGAA	1 cut(s)	684
SlaI	CTCGAG	1 cut(s)	418
SmlI	CTYRAG	2 cut(s)	10, 418
SmoI	CTYRAG	2 cut(s)	10, 418
Sse9I	AATT	5 cut(s)	17, 68, 188, 352, 608
SseBI	AGGCCT	2 cut(s)	311, 370
SsiI	CCGC	4 cut(s)	45, 337, 340, 534
SspMI	CTAG	2 cut(s)	282, 555
SstI	GAGCTC	1 cut(s)	607
StuI	AGGCCT	2 cut(s)	311, 370
StyD4I	CCNGG	2 cut(s)	50, 306
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	2 cut(s)	236, 509
TaqI	TCGA	5 cut(s)	89, 251, 419, 633, 684
TasI	AATT	5 cut(s)	17, 68, 188, 352, 608
TauI	GCSGC	2 cut(s)	339, 342
TfiI	GAWTC	2 cut(s)	222, 264
TscAI	CASTG	3 cut(s)	247, 565, 679
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	1 cut(s)	474
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	320
TspRI	CASTG	3 cut(s)	247, 565, 679
Van91I	CCANNNNNTGG	1 cut(s)	313
XapI	RAATTY	2 cut(s)	17, 188
XceI	RCATGY	1 cut(s)	115
XcmI	CCANNNNNNNNNTGG	2 cut(s)	310, 314
XhoI	CTCGAG	1 cut(s)	418
XspI	CTAG	2 cut(s)	282, 555
Zsp2I	ATGCAT	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.