Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Forward (+)

39852907 .. 39854129

Gene Structure 1223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G476800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCATGTCAAACATGGTGAGTTCAAAACTCTTATTGGAGGTATTTCGTACCAAACAGATGAGCAGAGTCTGAAGGAAGCTTTTGCAAAATATGGTGAAGTTATTAATGCAAGAATCATCAGTGACCGTGAAACTGGTAGATCTAGAGGATTTGGGTTCATCACTAGCGAGGAGGCATCCAGTGCAATCCAGGCCTTGGATGGGCATGAACTTCATGGCCGTCGAGTAAGGGTGAATTATGCTACTGATAGACCTCGCCCTAACTTCGGTGATGGAGGTGGTTTTGAAACTGCTAGCACTGGAGGTGGTTTTGGCAATAACATCAATTTGGGTGTTGCTGTTGCTGTTGGTGGTGCTCATAACTTTGTTGGCGGTGCTGACAACAGCTTTGGCAGTGGTGGAGCTCAATTGGGAGAGAACAAAGGTGGTTTCAGCTTGCATGATCCCTTGAAAGGAAATGATAAGGATGATGATGATGATGCCGGCAACTTTCTCAAGAGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

169

Amino Acids

17.67

Weight (kDa)

5.64

Isoelectric Point (pI)

27.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	196
AciI	CCGC	1 cut(s)	372
AclWI	GGATC	1 cut(s)	437
AcoI	YGGCCR	1 cut(s)	217
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	4 cut(s)	196, 201, 266, 452
AgsI	TTSAA	3 cut(s)	25, 287, 451
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	4 cut(s)	80, 387, 404, 435
AluI	AGCT	4 cut(s)	80, 387, 404, 435
Alw21I	GWGCWC	2 cut(s)	358, 406
AlwI	GGATC	1 cut(s)	437
AlwNI	CAGNNNCTG	1 cut(s)	70
AoxI	GGCC	2 cut(s)	192, 217
ArsI	GACNNNNNNTTYG	2 cut(s)	371, 403
AseI	ATTAAT	1 cut(s)	105
AsuHPI	GGTGA	4 cut(s)	29, 107, 244, 281
AsuNHI	GCTAGC	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	406
Bbv12I	GWGCWC	2 cut(s)	358, 406
BccI	CCATC	2 cut(s)	194, 266
BceAI	ACGGC	1 cut(s)	204
BciT130I	CCWGG	1 cut(s)	191
BfaI	CTAG	3 cut(s)	144, 165, 294
BglII	AGATCT	1 cut(s)	140
Bme1390I	CCNGG	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	2 cut(s)	185, 469
BmtI	GCTAGC	1 cut(s)	297
BpmI	CTGGAG	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	479
BsaJI	CCNNGG	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	4 cut(s)	196, 201, 266, 452
Bse118I	RCCGGY	1 cut(s)	482
Bse1I	ACTGG	3 cut(s)	139, 180, 304
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	3 cut(s)	176, 205, 472
BseLI	CCNNNNNNNGG	4 cut(s)	196, 201, 266, 452
BseNI	ACTGG	3 cut(s)	139, 180, 304
BseRI	GAGGAG	1 cut(s)	185
BshFI	GGCC	2 cut(s)	194, 219
BsiHKAI	GWGCWC	2 cut(s)	358, 406
BsiSI	CCGG	1 cut(s)	483
BslI	CCNNNNNNNGG	4 cut(s)	196, 201, 266, 452
BsnI	GGCC	2 cut(s)	194, 219
Bsp1286I	GDGCHC	2 cut(s)	358, 406
Bsp143I	GATC	2 cut(s)	140, 442
BspACI	CCGC	1 cut(s)	372
BspANI	GGCC	2 cut(s)	194, 219
BspOI	GCTAGC	1 cut(s)	297
BspPI	GGATC	1 cut(s)	437
BsrFI	RCCGGY	1 cut(s)	482
BsrI	ACTGG	3 cut(s)	139, 180, 304
BssAI	RCCGGY	1 cut(s)	482
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	2 cut(s)	140, 442
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstC8I	GCNNGC	3 cut(s)	295, 437, 484
BstF5I	GGATG	3 cut(s)	176, 205, 472
BstKTI	GATC	2 cut(s)	143, 445
BstMBI	GATC	2 cut(s)	140, 442
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 191
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BsuRI	GGCC	2 cut(s)	194, 219
BtsCI	GGATG	3 cut(s)	176, 205, 472
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	4 cut(s)	127, 187, 297, 400
Cac8I	GCNNGC	3 cut(s)	295, 437, 484
CaiI	CAGNNNCTG	1 cut(s)	70
Cfr10I	RCCGGY	1 cut(s)	482
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	5 cut(s)	5, 14, 206, 215, 440
CviJI	RGCY	7 cut(s)	80, 194, 219, 387, 404, 435, 503
CviKI_1	RGCY	7 cut(s)	80, 194, 219, 387, 404, 435, 503
CviQI	GTAC	1 cut(s)	49
DpnI	GATC	2 cut(s)	142, 444
DpnII	GATC	2 cut(s)	140, 442
EaeI	YGGCCR	1 cut(s)	217
Ecl136II	GAGCTC	1 cut(s)	404
Eco130I	CCWWGG	1 cut(s)	195
Eco147I	AGGCCT	1 cut(s)	194
Eco24I	GRGCYC	1 cut(s)	406
Eco53kI	GAGCTC	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	5 cut(s)	8, 17, 209, 218, 443
FaiI	YATR	8 cut(s)	6, 15, 93, 207, 216, 240, 360, 441
FatI	CATG	5 cut(s)	4, 13, 205, 214, 439
FokI	GGATG	3 cut(s)	163, 212, 479
FriOI	GRGCYC	1 cut(s)	406
FspBI	CTAG	3 cut(s)	144, 165, 294
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	2 cut(s)	194, 219
HapII	CCGG	1 cut(s)	483
Hin1II	CATG	5 cut(s)	8, 17, 209, 218, 443
HindIII	AAGCTT	1 cut(s)	78
HinfI	GANTC	2 cut(s)	67, 114
HpaII	CCGG	1 cut(s)	483
HphI	GGTGA	4 cut(s)	29, 107, 244, 281
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	2 cut(s)	144, 496
Hpy99I	CGWCG	1 cut(s)	225
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4V	TGCA	5 cut(s)	4, 86, 110, 185, 439
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 191
Hsp92II	CATG	5 cut(s)	8, 17, 209, 218, 443
KroI	GCCGGC	1 cut(s)	482
KroNI	GCCGGC	1 cut(s)	484
Kzo9I	GATC	2 cut(s)	140, 442
LmnI	GCTCC	1 cut(s)	401
LpnPI	CCDG	6 cut(s)	120, 176, 193, 203, 285, 496
LweI	GCATC	2 cut(s)	185, 469
MaeI	CTAG	3 cut(s)	144, 165, 294
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	2 cut(s)	142, 444
MboI	GATC	2 cut(s)	140, 442
MfeI	CAATTG	1 cut(s)	407
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	2 cut(s)	358, 406
MluCI	AATT	3 cut(s)	235, 325, 407
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	8 cut(s)	32, 140, 163, 166, 264, 269, 296, 492
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	482
MseI	TTAA	1 cut(s)	105
MspI	CCGG	1 cut(s)	483
MspR9I	CCNGG	1 cut(s)	191
MunI	CAATTG	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	182, 191
NaeI	GCCGGC	1 cut(s)	484
NdeII	GATC	2 cut(s)	140, 442
NgoMIV	GCCGGC	1 cut(s)	482
NheI	GCTAGC	1 cut(s)	293
NlaIII	CATG	5 cut(s)	8, 17, 209, 218, 443
NmuCI	GTSAC	1 cut(s)	122
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PceI	AGGCCT	1 cut(s)	194
PdiI	GCCGGC	1 cut(s)	484
PfeI	GAWTC	1 cut(s)	114
PflMI	CCANNNNNTGG	1 cut(s)	196
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PshBI	ATTAAT	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PstNI	CAGNNNCTG	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	140
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	406
SaqAI	TTAA	1 cut(s)	105
Sau3AI	GATC	2 cut(s)	140, 442
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	2 cut(s)	358, 406
SetI	ASST	9 cut(s)	43, 82, 256, 280, 307, 389, 406, 427, 437
SfaNI	GCATC	2 cut(s)	185, 469
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	3 cut(s)	235, 325, 407
SseBI	AGGCCT	1 cut(s)	194
SsiI	CCGC	1 cut(s)	372
SspMI	CTAG	3 cut(s)	144, 165, 294
SstI	GAGCTC	1 cut(s)	406
StuI	AGGCCT	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	128
TaqI	TCGA	1 cut(s)	223
TasI	AATT	3 cut(s)	235, 325, 407
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	4 cut(s)	127, 187, 304, 400
TseFI	GTSAC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	3 cut(s)	148, 203, 222
TspRI	CASTG	4 cut(s)	127, 187, 304, 400
Van91I	CCANNNNNTGG	1 cut(s)	196
VspI	ATTAAT	1 cut(s)	105
XbaI	TCTAGA	1 cut(s)	143
XceI	RCATGY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XspI	CTAG	3 cut(s)	144, 165, 294
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.