Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Reverse (-)

4313708 .. 4316214

Gene Structure 2507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG055700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGGCCCAAGTTTGGCCTCTCGGGTTTGCCTTTATCATCAGGCTGCGATGGCGTTCTTGAGTAAATTTGGCAATATACTTAGGCAGACCGCAACCAGGCAGATCAGATCTGAATTGGTTCCTTCCAAGCCGTCGATTTTTCAGGCGATAAGATGCATGTCAACTGGGCCAAGTTCTAAACTATTTATTGGAGGTGTGTCATTTCAGAGTGATGAGCAAAGTTTGAGGGAAGAATTTGCCAAATATGGTGAAGTTGTTGATGTAAGAATCATCACAGACCGTGACACTGGTAGATCGAGAGGCTTTGGATTCGTTACTTACACATCTAGCGAGGAGGCATCAAGTGCCATCCAGGCCTTGGATGGTCAGGAGCTTCATGGCCGCCGCGTCAGGGTGAATTATGCTACTGATAGGCCTCGGACTAACTTTGGAGGAGGTGGTTATGGTGGTGATGGTGGTTACCCGAGAGGTGGTGGAGGGTATGGTGGTGGTGGTGGCGGTTATGGAGGCGGCGGTTATGGAGGTGGCAGCTACGGTTCGGGGAACTCTGGTGGTGGATACGGTGGAAGTGGAGTTGGCTACAACAGCGGGGGCACTTTTGATAATGCTAGCACTGGTGGTTTTGGTGGTACTGACAACAGCTTTTCCACTGGTGGAGCTCAATTTGGAGAGGACAAAAGTGGCTTCGAAGAGCCATTAGAAGGAAACAATAGGGATGATGATGACACTGCAGACTTCGAAAAAAGGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

250

Amino Acids

25.87

Weight (kDa)

5.31

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	61 - 131	8.1e-22	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	358
AccII	CGCG	1 cut(s)	387
AciI	CCGC	7 cut(s)	90, 382, 385, 498, 510, 513, 588
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	2 cut(s)	65, 233
AfaI	GTAC	1 cut(s)	631
AfiI	CCNNNNNNNGG	6 cut(s)	13, 96, 358, 391, 470, 701
AjnI	CCWGG	2 cut(s)	95, 351
AluBI	AGCT	4 cut(s)	373, 531, 642, 659
AluI	AGCT	4 cut(s)	373, 531, 642, 659
Alw21I	GWGCWC	1 cut(s)	661
Ama87I	CYCGRG	2 cut(s)	21, 463
AoxI	GGCC	7 cut(s)	4, 15, 167, 354, 379, 413, 747
ApaI	GGGCCC	1 cut(s)	8
ApeKI	GCWGC	2 cut(s)	44, 528
ApoI	RAATTY	2 cut(s)	65, 233
Asp700I	GAANNNNTTC	1 cut(s)	117
AspS9I	GGNCC	4 cut(s)	4, 5, 167, 747
AsuHPI	GGTGA	3 cut(s)	260, 406, 461
AsuII	TTCGAA	2 cut(s)	687, 738
AsuNHI	GCTAGC	1 cut(s)	608
AvaI	CYCGRG	2 cut(s)	21, 463
BaeGI	GKGCMC	2 cut(s)	8, 596
BanII	GRGCYC	2 cut(s)	8, 661
Bbv12I	GWGCWC	1 cut(s)	661
BbvI	GCAGC	2 cut(s)	31, 540
BccI	CCATC	4 cut(s)	43, 356, 356, 446
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	2 cut(s)	97, 353
BciVI	GTATCC	1 cut(s)	551
BfaI	CTAG	2 cut(s)	327, 609
BfmI	CTRYAG	1 cut(s)	729
BfuI	GTATCC	1 cut(s)	551
BglI	GCCNNNNNGGC	1 cut(s)	353
BglII	AGATCT	1 cut(s)	107
BisI	GCNGC	5 cut(s)	45, 382, 385, 511, 529
BlsI	GCNGC	5 cut(s)	46, 383, 386, 512, 530
Bme1390I	CCNGG	2 cut(s)	97, 353
BmeT110I	CYCGRG	2 cut(s)	21, 463
BmgT120I	GGNCC	4 cut(s)	4, 5, 167, 747
BmiI	GGNNCC	2 cut(s)	6, 120
BmrFI	CCNGG	2 cut(s)	97, 353
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	2 cut(s)	143, 347
BmtI	GCTAGC	1 cut(s)	612
BmuI	ACTGGG	1 cut(s)	174
Bpu14I	TTCGAA	2 cut(s)	687, 738
BpuEI	CTTGAG	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	357, 416
Bsc4I	CCNNNNNNNGG	6 cut(s)	13, 96, 358, 391, 470, 701
Bse1I	ACTGG	4 cut(s)	169, 292, 619, 655
BseBI	CCWGG	2 cut(s)	97, 353
BseDI	CCNNGG	2 cut(s)	357, 416
BseGI	GGATG	3 cut(s)	348, 367, 721
BseLI	CCNNNNNNNGG	6 cut(s)	13, 96, 358, 391, 470, 701
BseNI	ACTGG	4 cut(s)	169, 292, 619, 655
BseRI	GAGGAG	2 cut(s)	347, 447
BseSI	GKGCMC	2 cut(s)	8, 596
BseXI	GCAGC	2 cut(s)	31, 540
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	7 cut(s)	6, 17, 169, 356, 381, 415, 749
BsiHKAI	GWGCWC	1 cut(s)	661
BsiHKCI	CYCGRG	2 cut(s)	21, 463
BslI	CCNNNNNNNGG	6 cut(s)	13, 96, 358, 391, 470, 701
BsnI	GGCC	7 cut(s)	6, 17, 169, 356, 381, 415, 749
BsoBI	CYCGRG	2 cut(s)	21, 463
Bsp119I	TTCGAA	2 cut(s)	687, 738
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	3 cut(s)	8, 596, 661
Bsp143I	GATC	3 cut(s)	102, 107, 293
BspACI	CCGC	7 cut(s)	90, 382, 385, 498, 510, 513, 588
BspANI	GGCC	7 cut(s)	6, 17, 169, 356, 381, 415, 749
BspFNI	CGCG	1 cut(s)	387
BspLI	GGNNCC	2 cut(s)	6, 120
BspMAI	CTGCAG	1 cut(s)	733
BspOI	GCTAGC	1 cut(s)	612
BspQI	GCTCTTC	1 cut(s)	684
BspT104I	TTCGAA	2 cut(s)	687, 738
BsrI	ACTGG	4 cut(s)	169, 292, 619, 655
BssECI	CCNNGG	2 cut(s)	357, 416
BssMI	GATC	3 cut(s)	102, 107, 293
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	2 cut(s)	97, 353
Bst4CI	ACNGT	3 cut(s)	281, 536, 563
Bst6I	CTCTTC	1 cut(s)	684
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstBI	TTCGAA	2 cut(s)	687, 738
BstC8I	GCNNGC	1 cut(s)	610
BstDEI	CTNAG	1 cut(s)	80
BstEII	GGTNACC	1 cut(s)	458
BstF5I	GGATG	3 cut(s)	348, 367, 721
BstFNI	CGCG	1 cut(s)	387
BstKTI	GATC	3 cut(s)	105, 110, 296
BstMBI	GATC	3 cut(s)	102, 107, 293
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 344, 353, 585
BstNI	CCWGG	2 cut(s)	97, 353
BstNSI	RCATGY	1 cut(s)	160
BstPI	GGTNACC	1 cut(s)	458
BstSCI	CCNGG	2 cut(s)	95, 351
BstSFI	CTRYAG	1 cut(s)	729
BstSLI	GKGCMC	2 cut(s)	8, 596
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	2 cut(s)	31, 540
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BsuI	GTATCC	1 cut(s)	551
BsuRI	GGCC	7 cut(s)	6, 17, 169, 356, 381, 415, 749
BtgZI	GCGATG	1 cut(s)	62
BtsCI	GGATG	3 cut(s)	348, 367, 721
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	4 cut(s)	285, 612, 648, 726
Cac8I	GCNNGC	1 cut(s)	610
Cfr13I	GGNCC	4 cut(s)	4, 5, 167, 747
CseI	GACGC	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	630
CviAII	CATG	2 cut(s)	157, 377
CviQI	GTAC	1 cut(s)	630
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	3 cut(s)	104, 109, 295
DpnII	GATC	3 cut(s)	102, 107, 293
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	684
EarI	CTCTTC	1 cut(s)	684
Ecl136II	GAGCTC	1 cut(s)	659
Eco130I	CCWWGG	1 cut(s)	357
Eco147I	AGGCCT	2 cut(s)	356, 415
Eco24I	GRGCYC	2 cut(s)	8, 661
Eco53kI	GAGCTC	1 cut(s)	659
Eco88I	CYCGRG	2 cut(s)	21, 463
Eco91I	GGTNACC	1 cut(s)	458
EcoICRI	GAGCTC	1 cut(s)	659
EcoO109I	RGGNCCY	1 cut(s)	747
EcoO65I	GGTNACC	1 cut(s)	458
EcoRII	CCWGG	2 cut(s)	95, 351
EcoT14I	CCWWGG	1 cut(s)	357
EcoT22I	ATGCAT	1 cut(s)	158
EcoT38I	GRGCYC	2 cut(s)	8, 661
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	2 cut(s)	160, 380
FaiI	YATR	9 cut(s)	77, 158, 246, 378, 402, 444, 483, 504, 519
FatI	CATG	2 cut(s)	156, 376
FauI	CCCGC	1 cut(s)	581
Fnu4HI	GCNGC	5 cut(s)	45, 382, 385, 511, 529
FokI	GGATG	3 cut(s)	335, 374, 728
FriOI	GRGCYC	2 cut(s)	8, 661
Fsp4HI	GCNGC	5 cut(s)	45, 382, 385, 511, 529
FspBI	CTAG	2 cut(s)	327, 609
GluI	GCNGC	5 cut(s)	45, 382, 385, 511, 529
HaeIII	GGCC	7 cut(s)	6, 17, 169, 356, 381, 415, 749
HgaI	GACGC	1 cut(s)	376
Hin1II	CATG	2 cut(s)	160, 380
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HinfI	GANTC	2 cut(s)	267, 309
HphI	GGTGA	3 cut(s)	260, 406, 461
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	4 cut(s)	107, 112, 207, 420
Hpy188III	TCNNGA	3 cut(s)	58, 297, 368
Hpy8I	GTNNAC	1 cut(s)	162
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	2 cut(s)	132, 695
HpyCH4III	ACNGT	3 cut(s)	281, 536, 563
HpyCH4V	TGCA	2 cut(s)	156, 731
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 344, 353, 585
HpyF3I	CTNAG	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	160, 380
Kzo9I	GATC	3 cut(s)	102, 107, 293
LguI	GCTCTTC	1 cut(s)	684
LmnI	GCTCC	2 cut(s)	370, 656
Lsp1109I	GCAGC	2 cut(s)	31, 540
LweI	GCATC	2 cut(s)	143, 347
MaeI	CTAG	2 cut(s)	327, 609
MaeIII	GTNAC	3 cut(s)	281, 313, 458
MalI	GATC	3 cut(s)	104, 109, 295
MboI	GATC	3 cut(s)	102, 107, 293
MboII	GAAGA	2 cut(s)	242, 701
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	3 cut(s)	8, 596, 661
MluCI	AATT	5 cut(s)	65, 113, 233, 397, 662
Mph1103I	ATGCAT	1 cut(s)	158
MroXI	GAANNNNTTC	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	588
MspR9I	CCNGG	2 cut(s)	97, 353
MvaI	CCWGG	2 cut(s)	97, 353
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	4 cut(s)	50, 344, 353, 585
NdeII	GATC	3 cut(s)	102, 107, 293
NheI	GCTAGC	1 cut(s)	608
NlaIII	CATG	2 cut(s)	160, 380
NlaIV	GGNNCC	2 cut(s)	6, 120
NmuCI	GTSAC	1 cut(s)	281
NsiI	ATGCAT	1 cut(s)	158
NspI	RCATGY	1 cut(s)	160
NspV	TTCGAA	2 cut(s)	687, 738
PceI	AGGCCT	2 cut(s)	356, 415
PciSI	GCTCTTC	1 cut(s)	684
PdmI	GAANNNNTTC	1 cut(s)	117
PfeI	GAWTC	2 cut(s)	267, 309
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	5 cut(s)	46, 383, 386, 512, 530
Psp124BI	GAGCTC	1 cut(s)	661
Psp6I	CCWGG	2 cut(s)	95, 351
PspEI	GGTNACC	1 cut(s)	458
PspGI	CCWGG	2 cut(s)	95, 351
PspN4I	GGNNCC	2 cut(s)	6, 120
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	4 cut(s)	4, 5, 167, 747
PstI	CTGCAG	1 cut(s)	733
PsuI	RGATCY	1 cut(s)	107
RsaI	GTAC	1 cut(s)	631
RsaNI	GTAC	1 cut(s)	630
SacI	GAGCTC	1 cut(s)	661
SapI	GCTCTTC	1 cut(s)	684
SatI	GCNGC	5 cut(s)	45, 382, 385, 511, 529
Sau3AI	GATC	3 cut(s)	102, 107, 293
Sau96I	GGNCC	4 cut(s)	4, 5, 167, 747
ScrFI	CCNGG	2 cut(s)	97, 353
SduI	GDGCHC	3 cut(s)	8, 596, 661
SetI	ASST	8 cut(s)	196, 375, 439, 472, 526, 533, 644, 661
SfaNI	GCATC	2 cut(s)	143, 347
SfcI	CTRYAG	1 cut(s)	729
SfuI	TTCGAA	2 cut(s)	687, 738
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	5 cut(s)	65, 113, 233, 397, 662
SseBI	AGGCCT	2 cut(s)	356, 415
SsiI	CCGC	7 cut(s)	90, 382, 385, 498, 510, 513, 588
SspMI	CTAG	2 cut(s)	327, 609
SstI	GAGCTC	1 cut(s)	661
StuI	AGGCCT	2 cut(s)	356, 415
StyD4I	CCNGG	2 cut(s)	95, 351
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	3 cut(s)	281, 536, 563
TaqI	TCGA	4 cut(s)	134, 296, 687, 738
TasI	AATT	5 cut(s)	65, 113, 233, 397, 662
TauI	GCSGC	3 cut(s)	384, 387, 513
TfiI	GAWTC	2 cut(s)	267, 309
TscAI	CASTG	4 cut(s)	292, 619, 655, 733
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	2 cut(s)	44, 528
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	365
TspRI	CASTG	4 cut(s)	292, 619, 655, 733
Van91I	CCANNNNNTGG	1 cut(s)	358
XapI	RAATTY	2 cut(s)	65, 233
XceI	RCATGY	1 cut(s)	160
XcmI	CCANNNNNNNNNTGG	2 cut(s)	355, 359
XmnI	GAANNNNTTC	1 cut(s)	117
XspI	CTAG	2 cut(s)	327, 609
Zsp2I	ATGCAT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.