Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Reverse (-)

3885620 .. 3888890

Gene Structure 3271 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG056400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGAAGTCTCAGACCCGGAAAAAAAAAAAAAAAACAGAGTCTCAGAGAAGCCAGCGAGCAAGGTAACTGCGATGGCTTTCTTGAGTAAATTTGGGAATATACTTCGGCAGTCTGCAGGCAAGCAGATCAACTCTGACTTGTCTTCTTTCAAACTGTGGACCCATCAGGCTGTAAGATGCATGTCATCCATGGGAGGCTCAAAGCTTTTTATCGGAGGTATTTCGTATCAGACGGATGATGGCAGTCTGAGGGAGGCTTTTGCAAGATATGGAGATGTTGTTGATGCACGGATCATCACAGACCGTGAGAGTGGTAGATCAAGAGGATTTGGATTTGTTACTTACGCTACACCTGAGGGTGCATCAAGTGCCATTCAGGCCTTGGATGGAAAGGATCTTCATGGCCGTGTAATAAGGGTGAATTATGCCAATGAGAGGCCTCCTCGTAGTAGCTTTGGTTACGGAGGAGGTGATGGCGGTTACGGTGGTGGCGGAGGTGGTTACAGTGGTGGTGGAGGCCGTTACGGTGGCAGAGGCGGAGGTGGGGGTTACAGTGGTGGTGGAGGTGGCTACAACAGCTATGGCAATGACAGTTATAATAGTGGTGGTAATTATGGAAGTGGAAACTCTTTTGAAACTGCTAGTGGTGGAGGTTATGGCAATAGCACAAATTTTGCTCCTGGTAGTGTTGCTACTGGTAGTGCCGATAACTTTGGAGTTGGTGGTGGTGACAGCAGCTTTCCCACCGGTGGAGGTTTTGGCGATAGCCCAAATTATGGTTCTCCTGGTAGTGTTGGAACTGGTGGTGCCGATAACTTCGGTGTTGGTGGCAGTGATGACAGTAGCTTTCCCAACAGGGACGATGAGTTAGGCTATCAGAGTAGGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

296

Amino Acids

29.97

Weight (kDa)

6.74

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	69 - 139	6.4e-21	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
AccB1I	GGYRCC	1 cut(s)	806
AccB7I	CCANNNNNTGG	1 cut(s)	776
AciI	CCGC	3 cut(s)	477, 492, 537
AclWI	GGATC	2 cut(s)	299, 402
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	2 cut(s)	89, 670
AfiI	CCNNNNNNNGG	3 cut(s)	435, 749, 776
AgeI	ACCGGT	1 cut(s)	746
AgsI	TTSAA	2 cut(s)	151, 635
AjnI	CCWGG	2 cut(s)	679, 784
AjuI	GAANNNNNNNTTGG	2 cut(s)	763, 795
AluBI	AGCT	5 cut(s)	205, 453, 579, 738, 846
AluI	AGCT	5 cut(s)	205, 453, 579, 738, 846
Alw26I	GTCTC	2 cut(s)	13, 46
AlwI	GGATC	2 cut(s)	299, 402
AoxI	GGCC	5 cut(s)	378, 403, 437, 517, 885
ApeKI	GCWGC	1 cut(s)	735
ApoI	RAATTY	2 cut(s)	89, 670
AsiGI	ACCGGT	1 cut(s)	746
AspS9I	GGNCC	2 cut(s)	159, 885
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	3 cut(s)	430, 482, 740
AvaII	GGWCC	1 cut(s)	159
AxyI	CCTNAGG	1 cut(s)	354
BanI	GGYRCC	1 cut(s)	806
BbsI	GAAGAC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	747
BccI	CCATC	5 cut(s)	67, 171, 233, 380, 467
BceAI	ACGGC	2 cut(s)	390, 504
BciT130I	CCWGG	2 cut(s)	681, 786
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	2 cut(s)	13, 46
BfaI	CTAG	1 cut(s)	642
BfmI	CTRYAG	1 cut(s)	114
BglI	GCCNNNNNGGC	1 cut(s)	377
BisI	GCNGC	1 cut(s)	736
BlsI	GCNGC	1 cut(s)	737
Bme1390I	CCNGG	3 cut(s)	17, 681, 786
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	2 cut(s)	159, 885
BmiI	GGNNCC	2 cut(s)	161, 808
BmrFI	CCNGG	3 cut(s)	17, 681, 786
BmsI	GCATC	3 cut(s)	167, 274, 371
BpiI	GAAGAC	1 cut(s)	135
BplI	GAGNNNNNCTC	2 cut(s)	427, 459
BpuEI	CTTGAG	1 cut(s)	103
BpuMI	CCSGG	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	189, 381
BsaWI	WCCGGW	1 cut(s)	746
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	3 cut(s)	435, 749, 776
Bse118I	RCCGGY	1 cut(s)	746
Bse1I	ACTGG	2 cut(s)	700, 805
Bse21I	CCTNAGG	1 cut(s)	354
Bse3DI	GCAATG	1 cut(s)	592
BseBI	CCWGG	2 cut(s)	681, 786
BseDI	CCNNGG	2 cut(s)	189, 381
BseGI	GGATG	3 cut(s)	185, 241, 391
BseLI	CCNNNNNNNGG	3 cut(s)	435, 749, 776
BseMI	GCAATG	1 cut(s)	592
BseMII	CTCAG	4 cut(s)	24, 57, 239, 345
BseNI	ACTGG	2 cut(s)	700, 805
BseRI	GAGGAG	2 cut(s)	432, 480
BseXI	GCAGC	1 cut(s)	747
BshFI	GGCC	5 cut(s)	380, 405, 439, 519, 887
BshNI	GGYRCC	1 cut(s)	806
BshTI	ACCGGT	1 cut(s)	746
BsiSI	CCGG	2 cut(s)	17, 747
BslFI	GGGAC	1 cut(s)	872
BslI	CCNNNNNNNGG	3 cut(s)	435, 749, 776
BsmAI	GTCTC	2 cut(s)	13, 46
BsmFI	GGGAC	1 cut(s)	872
BsnI	GGCC	5 cut(s)	380, 405, 439, 519, 887
Bsp143I	GATC	4 cut(s)	126, 291, 317, 394
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	3 cut(s)	477, 492, 537
BspANI	GGCC	5 cut(s)	380, 405, 439, 519, 887
BspCNI	CTCAG	4 cut(s)	23, 56, 240, 346
BspLI	GGNNCC	2 cut(s)	161, 808
BspMAI	CTGCAG	1 cut(s)	118
BspPI	GGATC	2 cut(s)	299, 402
BspT107I	GGYRCC	1 cut(s)	806
BsrDI	GCAATG	1 cut(s)	592
BsrFI	RCCGGY	1 cut(s)	746
BsrI	ACTGG	2 cut(s)	700, 805
BssAI	RCCGGY	1 cut(s)	746
BssECI	CCNNGG	2 cut(s)	189, 381
BssMI	GATC	4 cut(s)	126, 291, 317, 394
BssT1I	CCWWGG	2 cut(s)	189, 381
Bst2UI	CCWGG	2 cut(s)	681, 786
Bst4CI	ACNGT	8 cut(s)	156, 305, 485, 506, 527, 554, 593, 842
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstC8I	GCNNGC	4 cut(s)	54, 58, 118, 122
BstDEI	CTNAG	4 cut(s)	10, 43, 248, 354
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	3 cut(s)	185, 241, 391
BstKTI	GATC	4 cut(s)	129, 294, 320, 397
BstMAI	GTCTC	2 cut(s)	13, 46
BstMBI	GATC	4 cut(s)	126, 291, 317, 394
BstMWI	GCNNNNNNNGC	3 cut(s)	368, 377, 576
BstNI	CCWGG	2 cut(s)	681, 786
BstNSI	RCATGY	1 cut(s)	184
BstSCI	CCNGG	3 cut(s)	15, 679, 784
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	1 cut(s)	747
BstV2I	GAAGAC	1 cut(s)	135
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
Bsu36I	CCTNAGG	1 cut(s)	354
BsuRI	GGCC	5 cut(s)	380, 405, 439, 519, 887
BtgI	CCRYGG	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	86
BtsCI	GGATG	3 cut(s)	185, 241, 391
BtsI	GCAGTG	1 cut(s)	838
BtsIMutI	CAGTG	3 cut(s)	511, 559, 838
Cac8I	GCNNGC	4 cut(s)	54, 58, 118, 122
Cfr10I	RCCGGY	1 cut(s)	746
Cfr13I	GGNCC	2 cut(s)	159, 885
CspAI	ACCGGT	1 cut(s)	746
CviAII	CATG	3 cut(s)	181, 190, 401
DdeI	CTNAG	4 cut(s)	10, 43, 248, 354
DpnI	GATC	4 cut(s)	128, 293, 319, 396
DpnII	GATC	4 cut(s)	126, 291, 317, 394
EaeI	YGGCCR	1 cut(s)	403
EciI	GGCGGA	2 cut(s)	507, 552
Eco130I	CCWWGG	2 cut(s)	189, 381
Eco147I	AGGCCT	2 cut(s)	380, 439
Eco47I	GGWCC	1 cut(s)	159
Eco81I	CCTNAGG	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	885
EcoRII	CCWGG	2 cut(s)	679, 784
EcoT14I	CCWWGG	2 cut(s)	189, 381
EcoT22I	ATGCAT	1 cut(s)	182
ErhI	CCWWGG	2 cut(s)	189, 381
FaeI	CATG	3 cut(s)	184, 193, 404
FaqI	GGGAC	1 cut(s)	872
FatI	CATG	3 cut(s)	180, 189, 400
Fnu4HI	GCNGC	1 cut(s)	736
FokI	GGATG	3 cut(s)	172, 248, 398
Fsp4HI	GCNGC	1 cut(s)	736
FspBI	CTAG	1 cut(s)	642
GluI	GCNGC	1 cut(s)	736
HaeIII	GGCC	5 cut(s)	380, 405, 439, 519, 887
HapII	CCGG	2 cut(s)	17, 747
Hin1II	CATG	3 cut(s)	184, 193, 404
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	1 cut(s)	39
HpaII	CCGG	2 cut(s)	17, 747
HphI	GGTGA	3 cut(s)	430, 482, 740
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	7 cut(s)	13, 46, 136, 215, 231, 249, 879
Hpy188III	TCNNGA	2 cut(s)	82, 321
Hpy8I	GTNNAC	1 cut(s)	159
HpyCH4III	ACNGT	8 cut(s)	156, 305, 485, 506, 527, 554, 593, 842
HpyCH4V	TGCA	5 cut(s)	116, 180, 263, 287, 362
HpyF10VI	GCNNNNNNNGC	3 cut(s)	368, 377, 576
HpyF3I	CTNAG	4 cut(s)	10, 43, 248, 354
Hsp92II	CATG	3 cut(s)	184, 193, 404
Kzo9I	GATC	4 cut(s)	126, 291, 317, 394
LmnI	GCTCC	1 cut(s)	682
Lsp1109I	GCAGC	1 cut(s)	747
LweI	GCATC	3 cut(s)	167, 274, 371
MaeI	CTAG	1 cut(s)	642
MaeIII	GTNAC	8 cut(s)	64, 337, 458, 479, 500, 521, 548, 728
MalI	GATC	4 cut(s)	128, 293, 319, 396
MboI	GATC	4 cut(s)	126, 291, 317, 394
MboII	GAAGA	2 cut(s)	135, 389
MflI	RGATCY	1 cut(s)	394
MluCI	AATT	5 cut(s)	89, 421, 610, 670, 772
MlyI	GAGTC	1 cut(s)	48
MmeI	TCCRAC	1 cut(s)	775
Mph1103I	ATGCAT	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	405
MspI	CCGG	2 cut(s)	17, 747
MspR9I	CCNGG	3 cut(s)	17, 681, 786
MvaI	CCWGG	2 cut(s)	681, 786
MwoI	GCNNNNNNNGC	3 cut(s)	368, 377, 576
NciI	CCSGG	1 cut(s)	17
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	4 cut(s)	126, 291, 317, 394
NlaIII	CATG	3 cut(s)	184, 193, 404
NlaIV	GGNNCC	2 cut(s)	161, 808
NmuCI	GTSAC	1 cut(s)	728
NsiI	ATGCAT	1 cut(s)	182
NspI	RCATGY	1 cut(s)	184
PceI	AGGCCT	2 cut(s)	380, 439
PflMI	CCANNNNNTGG	1 cut(s)	776
PinAI	ACCGGT	1 cut(s)	746
PkrI	GCNGC	1 cut(s)	737
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PsiI	TTATAA	1 cut(s)	597
Psp6I	CCWGG	2 cut(s)	679, 784
PspGI	CCWGG	2 cut(s)	679, 784
PspN4I	GGNNCC	2 cut(s)	161, 808
PspPI	GGNCC	2 cut(s)	159, 885
PstI	CTGCAG	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	394
RseI	CAYNNNNRTG	1 cut(s)	405
SatI	GCNGC	1 cut(s)	736
Sau3AI	GATC	4 cut(s)	126, 291, 317, 394
Sau96I	GGNCC	2 cut(s)	159, 885
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	3 cut(s)	17, 681, 786
SfaNI	GCATC	3 cut(s)	167, 274, 371
SfcI	CTRYAG	1 cut(s)	114
SgrAI	CRCCGGYG	1 cut(s)	746
SinI	GGWCC	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
Sse9I	AATT	5 cut(s)	89, 421, 610, 670, 772
SseBI	AGGCCT	2 cut(s)	380, 439
SsiI	CCGC	3 cut(s)	477, 492, 537
SspMI	CTAG	1 cut(s)	642
StuI	AGGCCT	2 cut(s)	380, 439
StyD4I	CCNGG	3 cut(s)	15, 679, 784
StyI	CCWWGG	2 cut(s)	189, 381
TaaI	ACNGT	8 cut(s)	156, 305, 485, 506, 527, 554, 593, 842
TasI	AATT	5 cut(s)	89, 421, 610, 670, 772
TscAI	CASTG	3 cut(s)	511, 559, 838
TseFI	GTSAC	1 cut(s)	728
TseI	GCWGC	1 cut(s)	735
Tsp45I	GTSAC	1 cut(s)	728
TspDTI	ATGAA	1 cut(s)	389
TspGWI	ACGGA	3 cut(s)	248, 304, 477
TspRI	CASTG	3 cut(s)	511, 559, 838
Van91I	CCANNNNNTGG	1 cut(s)	776
VpaK11BI	GGWCC	1 cut(s)	159
XapI	RAATTY	2 cut(s)	89, 670
XceI	RCATGY	1 cut(s)	184
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XspI	CTAG	1 cut(s)	642
Zsp2I	ATGCAT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.