Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Reverse (-)

29710418 .. 29713014

Gene Structure 2597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1212100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTGGGGGTTTTGTATACGATCCGTGATTACGATGGCTTTCTTAAGTAAAATTGGGAGCATACTTAGGCAGACTGCAAACAAGCAGATCAGGTCTGAAGTATCTCCTTTCAAACTGTCCATCCATCAAGCTATAAGATGCATGTCATCCATGGGAAGCTCAAAGCTCTTCATCGGAGGTGTTTCGTACCAGACAGATGACCAGAGTCTGAGGGAGGCTTTTCAAAAATACGGTGAAGTTGTAGACGCAAGAATCATCATGGACCGTGAAAGTGGTAGATCAAGAGGATTTGGATTCGTGACTTTCACTTCTAATGAGGAGGCAGCTAGTGCTCTCGAGGCCTTGGATGGGCAGGAGCTTCATGGCCGACGAGTAAGGGTGAATTATGCTACTGAAAGGCCTCGCCCCAGCTATAATAATTACGGTGATGGTCAAAATAGTTATGCACCTGGTGGTGGATTTGGTAACTATGGACCCGGTGGAGGTGACAGCTATGGAAGAGGAAACACTGGATATGGTCCAGGAAGCTACAACAGTCCAGGAAGCTACAACAGTCCTAGCAATTATCCAAGTGCAAACACTTACGATGCTCCCAGTGGAAGTAGCAACAATTTTGGTGTTGGTAGTGGTGATAACTTCGGTGTTGGTGGCGACAACAGCTTTGGCACTCCTGATGCTCCATTTGGAGAGAACAAACCTGGCTTTGGCCTGGATGATCCATTGGAAGCAAACGATAGGGACGATAATGACGCGGGTGACTTCGCCAAGAGGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

259

Amino Acids

27.55

Weight (kDa)

5.14

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	56 - 126	1.8e-22	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	16, 243
AccII	CGCG	1 cut(s)	752
AciI	CCGC	1 cut(s)	752
AclWI	GGATC	2 cut(s)	15, 710
AcoI	YGGCCR	1 cut(s)	364
AcuI	CTGAAG	1 cut(s)	117
AdeI	CACNNNGTG	1 cut(s)	452
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	4 cut(s)	348, 455, 482, 704
AflII	CTTAAG	1 cut(s)	43
AgsI	TTSAA	2 cut(s)	112, 224
AjnI	CCWGG	5 cut(s)	448, 520, 538, 697, 708
Alw21I	GWGCWC	1 cut(s)	334
AlwI	GGATC	2 cut(s)	15, 710
AlwNI	CAGNNNCTG	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	335
AoxI	GGCC	5 cut(s)	339, 364, 398, 706, 771
ApeKI	GCWGC	1 cut(s)	323
ArsI	GACNNNNNNTTYG	2 cut(s)	644, 676
AspS9I	GGNCC	4 cut(s)	262, 473, 518, 771
AsuC2I	CCSGG	1 cut(s)	477
AsuHPI	GGTGA	6 cut(s)	245, 391, 437, 497, 641, 767
AvaI	CYCGRG	1 cut(s)	335
AvaII	GGWCC	3 cut(s)	262, 473, 518
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	335
BccI	CCATC	5 cut(s)	28, 128, 132, 341, 422
BciT130I	CCWGG	5 cut(s)	450, 522, 540, 699, 710
BcnI	CCSGG	1 cut(s)	477
BfaI	CTAG	2 cut(s)	327, 558
BfrI	CTTAAG	1 cut(s)	43
BglI	GCCNNNNNGGC	1 cut(s)	770
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
Bme1390I	CCNGG	6 cut(s)	450, 477, 522, 540, 699, 710
Bme18I	GGWCC	3 cut(s)	262, 473, 518
BmeT110I	CYCGRG	1 cut(s)	335
BmgT120I	GGNCC	4 cut(s)	262, 473, 518, 771
BmiI	GGNNCC	1 cut(s)	475
BmrFI	CCNGG	6 cut(s)	450, 477, 522, 540, 699, 710
BmrI	ACTGGG	1 cut(s)	588
BmsI	GCATC	3 cut(s)	128, 577, 664
BmuI	ACTGGG	1 cut(s)	588
BoxI	GACNNNNGTC	1 cut(s)	204
BpuMI	CCSGG	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	150, 342
Bsc4I	CCNNNNNNNGG	4 cut(s)	348, 455, 482, 704
Bse1I	ACTGG	2 cut(s)	514, 594
BseBI	CCWGG	5 cut(s)	450, 522, 540, 699, 710
BseDI	CCNNGG	2 cut(s)	150, 342
BseGI	GGATG	4 cut(s)	120, 146, 352, 718
BseLI	CCNNNNNNNGG	4 cut(s)	348, 455, 482, 704
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	2 cut(s)	514, 594
BseRI	GAGGAG	1 cut(s)	332
BseXI	GCAGC	1 cut(s)	335
BseYI	CCCAGC	1 cut(s)	407
Bsh1236I	CGCG	1 cut(s)	752
BshFI	GGCC	5 cut(s)	341, 366, 400, 708, 773
BsiHKAI	GWGCWC	1 cut(s)	334
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	1 cut(s)	477
BslFI	GGGAC	1 cut(s)	752
BslI	CCNNNNNNNGG	4 cut(s)	348, 455, 482, 704
BsmFI	GGGAC	1 cut(s)	752
BsnI	GGCC	5 cut(s)	341, 366, 400, 708, 773
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	4 cut(s)	20, 87, 278, 715
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	1 cut(s)	752
BspANI	GGCC	5 cut(s)	341, 366, 400, 708, 773
BspCNI	CTCAG	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	752
BspLI	GGNNCC	1 cut(s)	475
BspPI	GGATC	2 cut(s)	15, 710
BspQI	GCTCTTC	1 cut(s)	173
BspTI	CTTAAG	1 cut(s)	43
BsrI	ACTGG	2 cut(s)	514, 594
BssECI	CCNNGG	2 cut(s)	150, 342
BssMI	GATC	4 cut(s)	20, 87, 278, 715
BssNAI	GTATAC	1 cut(s)	17
BssT1I	CCWWGG	2 cut(s)	150, 342
Bst1107I	GTATAC	1 cut(s)	17
Bst2UI	CCWGG	5 cut(s)	450, 522, 540, 699, 710
Bst4CI	ACNGT	6 cut(s)	117, 233, 266, 425, 536, 554
Bst6I	CTCTTC	2 cut(s)	173, 493
BstAFI	CTTAAG	1 cut(s)	43
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstDEI	CTNAG	2 cut(s)	65, 209
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	4 cut(s)	120, 146, 352, 718
BstFNI	CGCG	1 cut(s)	752
BstKTI	GATC	4 cut(s)	23, 90, 281, 718
BstMBI	GATC	4 cut(s)	20, 87, 278, 715
BstMWI	GCNNNNNNNGC	4 cut(s)	329, 338, 657, 770
BstNI	CCWGG	5 cut(s)	450, 522, 540, 699, 710
BstNSI	RCATGY	1 cut(s)	145
BstPAI	GACNNNNGTC	1 cut(s)	204
BstSCI	CCNGG	6 cut(s)	448, 475, 520, 538, 697, 708
BstUI	CGCG	1 cut(s)	752
BstV1I	GCAGC	1 cut(s)	335
BstZ17I	GTATAC	1 cut(s)	17
BsuRI	GGCC	5 cut(s)	341, 366, 400, 708, 773
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	4 cut(s)	120, 146, 352, 718
BtsIMutI	CAGTG	2 cut(s)	507, 601
CaiI	CAGNNNCTG	1 cut(s)	208
Cfr13I	GGNCC	4 cut(s)	262, 473, 518, 771
CseI	GACGC	2 cut(s)	254, 758
CsiI	ACCWGGT	1 cut(s)	448
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	4 cut(s)	142, 151, 259, 362
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	2 cut(s)	65, 209
DpnI	GATC	4 cut(s)	22, 89, 280, 717
DpnII	GATC	4 cut(s)	20, 87, 278, 715
DraIII	CACNNNGTG	1 cut(s)	452
EaeI	YGGCCR	1 cut(s)	364
Eam1104I	CTCTTC	2 cut(s)	173, 493
EarI	CTCTTC	2 cut(s)	173, 493
Eco130I	CCWWGG	2 cut(s)	150, 342
Eco147I	AGGCCT	2 cut(s)	341, 400
Eco47I	GGWCC	3 cut(s)	262, 473, 518
Eco57I	CTGAAG	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	335
EcoO109I	RGGNCCY	1 cut(s)	771
EcoRII	CCWGG	5 cut(s)	448, 520, 538, 697, 708
EcoT14I	CCWWGG	2 cut(s)	150, 342
EcoT22I	ATGCAT	1 cut(s)	143
ErhI	CCWWGG	2 cut(s)	150, 342
FaeI	CATG	4 cut(s)	145, 154, 262, 365
FaqI	GGGAC	1 cut(s)	752
FatI	CATG	4 cut(s)	141, 150, 258, 361
FauI	CCCGC	1 cut(s)	745
FblI	GTMKAC	2 cut(s)	16, 243
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	4 cut(s)	107, 133, 359, 725
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	2 cut(s)	327, 558
GluI	GCNGC	1 cut(s)	324
GsaI	CCCAGC	1 cut(s)	411
HaeIII	GGCC	5 cut(s)	341, 366, 400, 708, 773
HapII	CCGG	1 cut(s)	477
HgaI	GACGC	2 cut(s)	254, 758
Hin1II	CATG	4 cut(s)	145, 154, 262, 365
HinfI	GANTC	3 cut(s)	205, 252, 294
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	6 cut(s)	245, 391, 437, 497, 641, 767
Hpy166II	GTNNAC	2 cut(s)	17, 244
Hpy188I	TCNGA	3 cut(s)	97, 176, 210
Hpy188III	TCNNGA	4 cut(s)	282, 298, 335, 671
Hpy8I	GTNNAC	2 cut(s)	17, 244
Hpy99I	CGWCG	1 cut(s)	372
HpyCH4III	ACNGT	6 cut(s)	117, 233, 266, 425, 536, 554
HpyCH4V	TGCA	4 cut(s)	77, 141, 446, 575
HpyF10VI	GCNNNNNNNGC	4 cut(s)	329, 338, 657, 770
HpyF3I	CTNAG	2 cut(s)	65, 209
Hsp92II	CATG	4 cut(s)	145, 154, 262, 365
Kzo9I	GATC	4 cut(s)	20, 87, 278, 715
LguI	GCTCTTC	1 cut(s)	173
LmnI	GCTCC	4 cut(s)	57, 355, 595, 682
Lsp1109I	GCAGC	1 cut(s)	335
LweI	GCATC	3 cut(s)	128, 577, 664
MabI	ACCWGGT	1 cut(s)	448
MaeI	CTAG	2 cut(s)	327, 558
MaeIII	GTNAC	4 cut(s)	298, 464, 485, 755
MalI	GATC	4 cut(s)	22, 89, 280, 717
MboI	GATC	4 cut(s)	20, 87, 278, 715
MboII	GAAGA	2 cut(s)	160, 510
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	5 cut(s)	51, 382, 418, 562, 610
MlyI	GAGTC	1 cut(s)	214
Mph1103I	ATGCAT	1 cut(s)	143
MseI	TTAA	1 cut(s)	44
MspCI	CTTAAG	1 cut(s)	43
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	6 cut(s)	450, 477, 522, 540, 699, 710
MvaI	CCWGG	5 cut(s)	450, 522, 540, 699, 710
MvnI	CGCG	1 cut(s)	752
MwoI	GCNNNNNNNGC	4 cut(s)	329, 338, 657, 770
NciI	CCSGG	1 cut(s)	477
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	4 cut(s)	20, 87, 278, 715
NlaIII	CATG	4 cut(s)	145, 154, 262, 365
NlaIV	GGNNCC	1 cut(s)	475
NmuCI	GTSAC	3 cut(s)	298, 485, 755
NsiI	ATGCAT	1 cut(s)	143
NspI	RCATGY	1 cut(s)	145
PaeR7I	CTCGAG	1 cut(s)	335
PceI	AGGCCT	2 cut(s)	341, 400
PciSI	GCTCTTC	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	738
PfeI	GAWTC	2 cut(s)	252, 294
PfoI	TCCNGGA	2 cut(s)	520, 538
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
PshAI	GACNNNNGTC	1 cut(s)	204
Psp6I	CCWGG	5 cut(s)	448, 520, 538, 697, 708
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	5 cut(s)	448, 520, 538, 697, 708
PspN4I	GGNNCC	1 cut(s)	475
PspPI	GGNCC	4 cut(s)	262, 473, 518, 771
PstNI	CAGNNNCTG	1 cut(s)	208
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SapI	GCTCTTC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	4 cut(s)	20, 87, 278, 715
Sau96I	GGNCC	4 cut(s)	262, 473, 518, 771
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	6 cut(s)	450, 477, 522, 540, 699, 710
SduI	GDGCHC	1 cut(s)	334
SexAI	ACCWGGT	1 cut(s)	448
SfaNI	GCATC	3 cut(s)	128, 577, 664
Sfr274I	CTCGAG	1 cut(s)	335
SinI	GGWCC	3 cut(s)	262, 473, 518
SlaI	CTCGAG	1 cut(s)	335
SmlI	CTYRAG	2 cut(s)	43, 335
SmoI	CTYRAG	2 cut(s)	43, 335
Sse9I	AATT	5 cut(s)	51, 382, 418, 562, 610
SseBI	AGGCCT	2 cut(s)	341, 400
SsiI	CCGC	1 cut(s)	752
SspMI	CTAG	2 cut(s)	327, 558
StuI	AGGCCT	2 cut(s)	341, 400
StyD4I	CCNGG	6 cut(s)	448, 475, 520, 538, 697, 708
StyI	CCWWGG	2 cut(s)	150, 342
TaaI	ACNGT	6 cut(s)	117, 233, 266, 425, 536, 554
TaqI	TCGA	1 cut(s)	336
TasI	AATT	5 cut(s)	51, 382, 418, 562, 610
TfiI	GAWTC	2 cut(s)	252, 294
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	2 cut(s)	514, 601
TseFI	GTSAC	3 cut(s)	298, 485, 755
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	3 cut(s)	298, 485, 755
TspDTI	ATGAA	2 cut(s)	160, 350
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	2 cut(s)	514, 601
Vha464I	CTTAAG	1 cut(s)	43
VpaK11BI	GGWCC	3 cut(s)	262, 473, 518
XceI	RCATGY	1 cut(s)	145
XhoI	CTCGAG	1 cut(s)	335
XmiI	GTMKAC	2 cut(s)	16, 243
XspI	CTAG	2 cut(s)	327, 558
Zsp2I	ATGCAT	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.