Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Reverse (-)

3729361 .. 3732733

Gene Structure 3373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG055700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCTGATTGACTTGATAAATGTTGTAGCACGGATCATCACAGACCGCGAGAGTGGCAGATCAAGAGGATTTGGATTTGTTACTTACGCTACACCTGAGGGTGCATCAAGTGCCATTCAGGCCTTGGATGGGAAGGATCTTCATGGCCGAGTAATAAGGGTGAATTATGCAAATGAGAGGCCTCCTCGTAGTAGCTTTGGTTATGGAGGAGGTGATGGCGGTTACGGGGGTGGCGGAGGCGGTTACGGTGGTGGCGGAGGCGGTTACAGTGGTGGCGGAGGCGGCTACAACAGCTATGGCAATGACAGTTATAATAGTGGTGGTAATTACGGAAGTGGAAACTCTTTTGAAACTGCTAGTGGTGGAGGTTATGGCAATAGCACAAATTTTGCTCCTTCTGGTAGTGTTGCTACTGGTAGTGCCGATAACTTTGGAGTTGGTGGTGGTGACAGCAGCTTTCCCACCGGTGGAGGTTTTGGCGATAGCCCAAATTATGGTTCTCCTGGTGGTGCCGATAACTTTGGTGTTGGTGGCAGTGATGACAGTAGCTTTCCCAACAGGGACAATGAGTTAGGCTATCAGAGTAGGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

197

Amino Acids

19.37

Weight (kDa)

4.48

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	10 - 53	1.1e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	509
AccB7I	CCANNNNNTGG	1 cut(s)	494
AccII	CGCG	1 cut(s)	48
AciI	CCGC	8 cut(s)	46, 219, 234, 240, 255, 261, 276, 282
AclWI	GGATC	2 cut(s)	41, 144
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	385
AfiI	CCNNNNNNNGG	3 cut(s)	129, 467, 494
AgeI	ACCGGT	1 cut(s)	464
AgsI	TTSAA	1 cut(s)	350
AjnI	CCWGG	1 cut(s)	502
AjuI	GAANNNNNNNTTGG	2 cut(s)	481, 513
AluBI	AGCT	4 cut(s)	195, 294, 456, 549
AluI	AGCT	4 cut(s)	195, 294, 456, 549
AlwI	GGATC	2 cut(s)	41, 144
AoxI	GGCC	4 cut(s)	120, 145, 179, 588
ApeKI	GCWGC	1 cut(s)	453
ApoI	RAATTY	1 cut(s)	385
AsiGI	ACCGGT	1 cut(s)	464
AspS9I	GGNCC	1 cut(s)	588
AsuHPI	GGTGA	3 cut(s)	172, 224, 458
AxyI	CCTNAGG	1 cut(s)	96
BanI	GGYRCC	1 cut(s)	509
BbvI	GCAGC	1 cut(s)	465
BccI	CCATC	2 cut(s)	122, 209
BciT130I	CCWGG	1 cut(s)	504
BfaI	CTAG	1 cut(s)	357
BglI	GCCNNNNNGGC	1 cut(s)	119
BisI	GCNGC	2 cut(s)	283, 454
BlsI	GCNGC	2 cut(s)	284, 455
Bme1390I	CCNGG	1 cut(s)	504
BmgT120I	GGNCC	1 cut(s)	588
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	1 cut(s)	504
BmsI	GCATC	1 cut(s)	113
BplI	GAGNNNNNCTC	2 cut(s)	169, 201
BsaJI	CCNNGG	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	464
Bsc4I	CCNNNNNNNGG	3 cut(s)	129, 467, 494
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	1 cut(s)	418
Bse21I	CCTNAGG	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	3 cut(s)	129, 467, 494
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	2 cut(s)	174, 222
BseXI	GCAGC	1 cut(s)	465
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	4 cut(s)	122, 147, 181, 590
BshNI	GGYRCC	1 cut(s)	509
BshTI	ACCGGT	1 cut(s)	464
BsiSI	CCGG	1 cut(s)	465
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	3 cut(s)	129, 467, 494
BsmFI	GGGAC	1 cut(s)	575
BsnI	GGCC	4 cut(s)	122, 147, 181, 590
Bsp143I	GATC	3 cut(s)	33, 59, 136
BspACI	CCGC	8 cut(s)	46, 219, 234, 240, 255, 261, 276, 282
BspANI	GGCC	4 cut(s)	122, 147, 181, 590
BspCNI	CTCAG	1 cut(s)	88
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	511
BspPI	GGATC	2 cut(s)	41, 144
BspT107I	GGYRCC	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	307
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	1 cut(s)	418
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	3 cut(s)	33, 59, 136
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	4 cut(s)	248, 269, 308, 545
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	133
BstFNI	CGCG	1 cut(s)	48
BstKTI	GATC	3 cut(s)	36, 62, 139
BstMBI	GATC	3 cut(s)	33, 59, 136
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 110, 119, 282, 291
BstNI	CCWGG	1 cut(s)	504
BstSCI	CCNGG	1 cut(s)	502
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	465
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
Bsu36I	CCTNAGG	1 cut(s)	96
BsuRI	GGCC	4 cut(s)	122, 147, 181, 590
BtsCI	GGATG	1 cut(s)	133
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	2 cut(s)	274, 541
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	1 cut(s)	588
CspAI	ACCGGT	1 cut(s)	464
CviAII	CATG	1 cut(s)	143
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	3 cut(s)	35, 61, 138
DpnII	GATC	3 cut(s)	33, 59, 136
EaeI	YGGCCR	1 cut(s)	145
EciI	GGCGGA	3 cut(s)	249, 270, 291
Eco130I	CCWWGG	1 cut(s)	123
Eco147I	AGGCCT	2 cut(s)	122, 181
Eco81I	CCTNAGG	1 cut(s)	96
EcoO109I	RGGNCCY	1 cut(s)	588
EcoRII	CCWGG	1 cut(s)	502
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	1 cut(s)	146
FaiI	YATR	7 cut(s)	144, 168, 204, 297, 312, 372, 495
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	1 cut(s)	142
Fnu4HI	GCNGC	2 cut(s)	283, 454
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	2 cut(s)	283, 454
FspBI	CTAG	1 cut(s)	357
GluI	GCNGC	2 cut(s)	283, 454
HaeIII	GGCC	4 cut(s)	122, 147, 181, 590
HapII	CCGG	1 cut(s)	465
Hin1II	CATG	1 cut(s)	146
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	3 cut(s)	172, 224, 458
Hpy188I	TCNGA	1 cut(s)	582
Hpy188III	TCNNGA	1 cut(s)	63
HpyAV	CCTTC	2 cut(s)	127, 405
HpyCH4III	ACNGT	4 cut(s)	248, 269, 308, 545
HpyCH4V	TGCA	2 cut(s)	104, 170
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 110, 119, 282, 291
HpyF3I	CTNAG	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	146
Kzo9I	GATC	3 cut(s)	33, 59, 136
LmnI	GCTCC	1 cut(s)	397
LpnPI	CCDG	8 cut(s)	104, 108, 384, 399, 478, 489, 516, 544
Lsp1109I	GCAGC	1 cut(s)	465
LweI	GCATC	1 cut(s)	113
MaeI	CTAG	1 cut(s)	357
MaeIII	GTNAC	5 cut(s)	79, 221, 242, 263, 446
MalI	GATC	3 cut(s)	35, 61, 138
MboI	GATC	3 cut(s)	33, 59, 136
MboII	GAAGA	1 cut(s)	131
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	4 cut(s)	163, 325, 385, 490
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	1 cut(s)	504
MvaI	CCWGG	1 cut(s)	504
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	5 cut(s)	54, 110, 119, 282, 291
NdeII	GATC	3 cut(s)	33, 59, 136
NlaIII	CATG	1 cut(s)	146
NlaIV	GGNNCC	1 cut(s)	511
NmeAIII	GCCGAG	1 cut(s)	173
NmuCI	GTSAC	1 cut(s)	446
PceI	AGGCCT	2 cut(s)	122, 181
PflMI	CCANNNNNTGG	1 cut(s)	494
PinAI	ACCGGT	1 cut(s)	464
PkrI	GCNGC	2 cut(s)	284, 455
PsiI	TTATAA	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	1 cut(s)	511
PspPI	GGNCC	1 cut(s)	588
PsuI	RGATCY	1 cut(s)	136
SatI	GCNGC	2 cut(s)	283, 454
Sau3AI	GATC	3 cut(s)	33, 59, 136
Sau96I	GGNCC	1 cut(s)	588
ScrFI	CCNGG	1 cut(s)	504
SetI	ASST	8 cut(s)	97, 197, 214, 296, 370, 458, 475, 551
SfaNI	GCATC	1 cut(s)	113
SgrAI	CRCCGGYG	1 cut(s)	464
Sse9I	AATT	4 cut(s)	163, 325, 385, 490
SseBI	AGGCCT	2 cut(s)	122, 181
SsiI	CCGC	8 cut(s)	46, 219, 234, 240, 255, 261, 276, 282
SspMI	CTAG	1 cut(s)	357
StuI	AGGCCT	2 cut(s)	122, 181
StyD4I	CCNGG	1 cut(s)	502
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	4 cut(s)	248, 269, 308, 545
TasI	AATT	4 cut(s)	163, 325, 385, 490
TauI	GCSGC	1 cut(s)	285
TscAI	CASTG	2 cut(s)	274, 541
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	1 cut(s)	453
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	1 cut(s)	131
TspGWI	ACGGA	2 cut(s)	46, 345
TspRI	CASTG	2 cut(s)	274, 541
Van91I	CCANNNNNTGG	1 cut(s)	494
XapI	RAATTY	1 cut(s)	385
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.