Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Reverse (-)

19451068 .. 19452382

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g17570.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCATCCATGGGAAGCTCCAAGCTCTTCATCGGAGGTGTTTCGTACCAGACAGATGACCAGAGTCTGAGGGAAGCTTTTCAAAAATATGGTGAAGTTGTAGACGCAAGAATCATCATGGACCGTGAAAGTGGTAGATCAAGAGGATTTGGATTCGTTACTTTCACTTCTAATGAGGAGGCAGCTAGTGCTCTCGAGGCCTTGGATGGGCAGGAGCTTCATGGCCGACGAGTAAGGGTGAACTATGCTACTGAAAGGCCTCGCCCCAGCTATAATAATTACGGTGATGGTCAAAATAGTTATGCACCTGGTGGTGGATTTAGTAACTATGCACCCGGTGGAGGTGACAGCTATGGAAGAGGAAACCCTGGATATGGTCCAGGAAGCTACAACAGTCCAGGAAGCTATAACAGTCCTAGCAATTATCCAAGTGCAAACACTTACGATGCTCCCAGTGGAAGTAGCAACAATTTTGGTGTTGGTAGTGGTGATAACTTCGGTGTTGGTGGTGACAACAGCTTTGGCACTCCTGATGCTCCATTTGGAGAGAACAAACCTGGCTTTGGCCTGGACGATCCATTGGAAGGAAATGATAGGGACGATAATGACGCGGGTGACTTCGCCAAGAGGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

212

Amino Acids

22.22

Weight (kDa)

4.46

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	102
AccII	CGCG	1 cut(s)	611
AciI	CCGC	1 cut(s)	611
AclWI	GGATC	1 cut(s)	569
AcoI	YGGCCR	1 cut(s)	223
AdeI	CACNNNGTG	2 cut(s)	311, 338
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	6 cut(s)	207, 314, 341, 374, 563, 584
AgsI	TTSAA	1 cut(s)	83
AjnI	CCWGG	6 cut(s)	307, 367, 379, 397, 556, 567
Alw21I	GWGCWC	1 cut(s)	193
AlwI	GGATC	1 cut(s)	569
AlwNI	CAGNNNCTG	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	5 cut(s)	198, 223, 257, 565, 630
ApeKI	GCWGC	1 cut(s)	182
ArsI	GACNNNNNNTTYG	2 cut(s)	503, 535
Asp700I	GAANNNNTTC	1 cut(s)	78
AspS9I	GGNCC	3 cut(s)	121, 377, 630
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	7 cut(s)	104, 250, 296, 356, 500, 521, 626
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	2 cut(s)	121, 377
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	2 cut(s)	200, 281
BciT130I	CCWGG	6 cut(s)	309, 369, 381, 399, 558, 569
BcnI	CCSGG	1 cut(s)	336
BfaI	CTAG	2 cut(s)	186, 417
BglI	GCCNNNNNGGC	1 cut(s)	629
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme1390I	CCNGG	7 cut(s)	309, 336, 369, 381, 399, 558, 569
Bme18I	GGWCC	2 cut(s)	121, 377
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	3 cut(s)	121, 377, 630
BmrFI	CCNGG	7 cut(s)	309, 336, 369, 381, 399, 558, 569
BmrI	ACTGGG	1 cut(s)	447
BmsI	GCATC	2 cut(s)	436, 523
BmuI	ACTGGG	1 cut(s)	447
BoxI	GACNNNNGTC	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	336
BsaJI	CCNNGG	3 cut(s)	9, 201, 367
Bsc4I	CCNNNNNNNGG	6 cut(s)	207, 314, 341, 374, 563, 584
Bse1I	ACTGG	1 cut(s)	453
BseBI	CCWGG	6 cut(s)	309, 369, 381, 399, 558, 569
BseDI	CCNNGG	3 cut(s)	9, 201, 367
BseGI	GGATG	2 cut(s)	5, 211
BseLI	CCNNNNNNNGG	6 cut(s)	207, 314, 341, 374, 563, 584
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	453
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	194
BseYI	CCCAGC	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	611
BshFI	GGCC	5 cut(s)	200, 225, 259, 567, 632
BsiHKAI	GWGCWC	1 cut(s)	193
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	611
BslI	CCNNNNNNNGG	6 cut(s)	207, 314, 341, 374, 563, 584
BsmFI	GGGAC	1 cut(s)	611
BsnI	GGCC	5 cut(s)	200, 225, 259, 567, 632
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	137, 574
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	1 cut(s)	611
BspANI	GGCC	5 cut(s)	200, 225, 259, 567, 632
BspCNI	CTCAG	1 cut(s)	60
BspFNI	CGCG	1 cut(s)	611
BspPI	GGATC	1 cut(s)	569
BspQI	GCTCTTC	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	453
BssECI	CCNNGG	3 cut(s)	9, 201, 367
BssMI	GATC	2 cut(s)	137, 574
BssT1I	CCWWGG	2 cut(s)	9, 201
Bst2UI	CCWGG	6 cut(s)	309, 369, 381, 399, 558, 569
Bst4CI	ACNGT	4 cut(s)	125, 284, 395, 413
Bst6I	CTCTTC	2 cut(s)	32, 352
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	5, 211
BstFNI	CGCG	1 cut(s)	611
BstKTI	GATC	2 cut(s)	140, 577
BstMBI	GATC	2 cut(s)	137, 574
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 197, 629
BstNI	CCWGG	6 cut(s)	309, 369, 381, 399, 558, 569
BstPAI	GACNNNNGTC	1 cut(s)	63
BstSCI	CCNGG	7 cut(s)	307, 334, 367, 379, 397, 556, 567
BstUI	CGCG	1 cut(s)	611
BstV1I	GCAGC	1 cut(s)	194
BsuRI	GGCC	5 cut(s)	200, 225, 259, 567, 632
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	5, 211
BtsIMutI	CAGTG	1 cut(s)	460
CaiI	CAGNNNCTG	1 cut(s)	67
Cfr13I	GGNCC	3 cut(s)	121, 377, 630
CseI	GACGC	2 cut(s)	113, 617
CsiI	ACCWGGT	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	3 cut(s)	10, 118, 221
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	2 cut(s)	139, 576
DpnII	GATC	2 cut(s)	137, 574
DraIII	CACNNNGTG	2 cut(s)	311, 338
EaeI	YGGCCR	1 cut(s)	223
Eam1104I	CTCTTC	2 cut(s)	32, 352
EarI	CTCTTC	2 cut(s)	32, 352
Eco130I	CCWWGG	2 cut(s)	9, 201
Eco147I	AGGCCT	2 cut(s)	200, 259
Eco47I	GGWCC	2 cut(s)	121, 377
Eco88I	CYCGRG	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	630
EcoRII	CCWGG	6 cut(s)	307, 367, 379, 397, 556, 567
EcoT14I	CCWWGG	2 cut(s)	9, 201
ErhI	CCWWGG	2 cut(s)	9, 201
FaeI	CATG	3 cut(s)	13, 121, 224
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	3 cut(s)	9, 117, 220
FauI	CCCGC	1 cut(s)	604
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	2 cut(s)	186, 417
GluI	GCNGC	1 cut(s)	183
GsaI	CCCAGC	1 cut(s)	270
HaeIII	GGCC	5 cut(s)	200, 225, 259, 567, 632
HapII	CCGG	1 cut(s)	336
HgaI	GACGC	2 cut(s)	113, 617
Hin1II	CATG	3 cut(s)	13, 121, 224
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	3 cut(s)	64, 111, 153
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	7 cut(s)	104, 250, 296, 356, 500, 521, 626
Hpy166II	GTNNAC	2 cut(s)	103, 241
Hpy188I	TCNGA	2 cut(s)	35, 69
Hpy188III	TCNNGA	3 cut(s)	141, 194, 530
Hpy8I	GTNNAC	2 cut(s)	103, 241
Hpy99I	CGWCG	1 cut(s)	231
HpyAV	CCTTC	1 cut(s)	578
HpyCH4III	ACNGT	4 cut(s)	125, 284, 395, 413
HpyCH4V	TGCA	3 cut(s)	305, 332, 434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 197, 629
HpyF3I	CTNAG	1 cut(s)	68
Hsp92II	CATG	3 cut(s)	13, 121, 224
Kzo9I	GATC	2 cut(s)	137, 574
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	4 cut(s)	23, 214, 454, 541
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	2 cut(s)	436, 523
MabI	ACCWGGT	1 cut(s)	307
MaeI	CTAG	2 cut(s)	186, 417
MaeIII	GTNAC	5 cut(s)	157, 323, 344, 509, 614
MalI	GATC	2 cut(s)	139, 576
MboI	GATC	2 cut(s)	137, 574
MboII	GAAGA	2 cut(s)	19, 369
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	3 cut(s)	277, 421, 469
MlyI	GAGTC	1 cut(s)	73
MroXI	GAANNNNTTC	1 cut(s)	78
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	7 cut(s)	309, 336, 369, 381, 399, 558, 569
MvaI	CCWGG	6 cut(s)	309, 369, 381, 399, 558, 569
MvnI	CGCG	1 cut(s)	611
MwoI	GCNNNNNNNGC	3 cut(s)	188, 197, 629
NciI	CCSGG	1 cut(s)	336
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	2 cut(s)	137, 574
NlaIII	CATG	3 cut(s)	13, 121, 224
NmuCI	GTSAC	3 cut(s)	344, 509, 614
PaeR7I	CTCGAG	1 cut(s)	194
PceI	AGGCCT	2 cut(s)	200, 259
PciSI	GCTCTTC	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	111, 153
PfoI	TCCNGGA	2 cut(s)	379, 397
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PshAI	GACNNNNGTC	1 cut(s)	63
Psp6I	CCWGG	6 cut(s)	307, 367, 379, 397, 556, 567
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	6 cut(s)	307, 367, 379, 397, 556, 567
PspPI	GGNCC	3 cut(s)	121, 377, 630
PstNI	CAGNNNCTG	1 cut(s)	67
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SapI	GCTCTTC	1 cut(s)	32
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	2 cut(s)	137, 574
Sau96I	GGNCC	3 cut(s)	121, 377, 630
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	7 cut(s)	309, 336, 369, 381, 399, 558, 569
SduI	GDGCHC	1 cut(s)	193
SexAI	ACCWGGT	1 cut(s)	307
SfaNI	GCATC	2 cut(s)	436, 523
Sfr274I	CTCGAG	1 cut(s)	194
SinI	GGWCC	2 cut(s)	121, 377
SlaI	CTCGAG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	3 cut(s)	277, 421, 469
SseBI	AGGCCT	2 cut(s)	200, 259
SsiI	CCGC	1 cut(s)	611
SspMI	CTAG	2 cut(s)	186, 417
StuI	AGGCCT	2 cut(s)	200, 259
StyD4I	CCNGG	7 cut(s)	307, 334, 367, 379, 397, 556, 567
StyI	CCWWGG	2 cut(s)	9, 201
TaaI	ACNGT	4 cut(s)	125, 284, 395, 413
TaqI	TCGA	1 cut(s)	195
TasI	AATT	3 cut(s)	277, 421, 469
TfiI	GAWTC	2 cut(s)	111, 153
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	3 cut(s)	344, 509, 614
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	3 cut(s)	344, 509, 614
TspDTI	ATGAA	2 cut(s)	19, 209
TspRI	CASTG	1 cut(s)	460
VpaK11BI	GGWCC	2 cut(s)	121, 377
XhoI	CTCGAG	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	2 cut(s)	186, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.