Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Forward (+)

58227939 .. 58229303

Gene Structure 1365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0453500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGCATCAGTCTTAAGAGTTCTATCAGCGACGAGAAGAGTTTTGGAAATTCCGAGTAGCTCTCAGTCTCAGCGTTGTTGGCTAAGTAACCAAGCGTGCTTGCTTCGGAGGTTGATGGAGGAACCCAAATCGCGAATCAAAACCCTTCTTGCTTCTGCGGCGGAGAAAGACTCTGCCTCTGATTTTTCTTGGGAATCACTTGTTAGTTCTCTCGCTTCTTCTTCCTCTCCTGACAAAACCCACTTGGTTCTGGAATGGAAATTGGAGAAGTTGCTAAAGGAGAATGAGAGAGATCATGATCGTTACTGTGAGCTGATATCTCTATGTGGAAAAGTTCGGAATCTCCCACTTGCAATGCAAGTCTTTTCTTCTATGGAGGCCAATGGAGTTCAACCCACTTGTGCAGTTTTCAATTCCCTTATTCATGTTTGCTTCTCTTCCGGGAATTTGTTCACTGCTATCAGCTTGTTTGAGATTATGGAGAGCTCAGAGGGACTTAAACCCAATTCCGACACTCATGATGCATTCATGTTTGCTTTCTTAAAGTCGGGCAAAATTGATATGATGCAAGCTTGGTACTCTGCCAAGAAATCTGCTGGCTTTGATTCTGATATTCAAACCTATCAGTCTTTGATTTCGGGTTGTATCAAATTGAAAAATTACGAGCTTGGGGATATGTTTTACAAAGAAATGGTATTTTCGGGAATCATGCCCAACTTGCCCATATTGGAGTATATGCTGGAAGGGCTTTGTAAGAGGAGAAGCTCTAGCCAAGTCAAAGAATTCTTGGAGATGGTGTGTGGTTATGGGTGGAAGATGAGTGGGAAAATGGCTGAGATGGTTGTGGGGTTGCATATCGAACTTGGGAAGGTGGAGCGATTGGAGGAGCTACTCGAGACTTTAATGGAGAGTGATCAGACTTCGGAAGTTTTGTTGCCGGTCCACTGTGGGATTATAAGGATGTTCGCCATGTTGGATAGATTAGATGATGTAGAGTACTCTGTGGGTAGAATGTTGAAACAAGGATTGTCATTTAAACATCCGGATGATGTAGAAAAGGTGATATGCTCGTACTTCAGGCTCTCGGAGTATGATAGGCTGGAGTTGTTCTTGGAATGTATCAAGGGTTCTTATGAACTTACAGGATCGACTTATGATTTATTGGTTGCTGGCTATCGAAGAGCCGGGTTATCTGACAAGTTGAGTGATATGAAACTAGATGGTGGATCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

411

Amino Acids

46.37

Weight (kDa)

5.48

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	101 - 144	2.6e-08	Pentatricopeptide repeat domain
TPR_24	PF23276	106 - 230	2.6e-06	Fungal tetratrico peptide repeats
PPR_long	PF17177	115 - 187	6e-06	Pentacotripeptide-repeat region of PRORP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	956
AccII	CGCG	1 cut(s)	133
AccIII	TCCGGA	1 cut(s)	1042
AciI	CCGC	2 cut(s)	158, 161
AclWI	GGATC	2 cut(s)	1153, 1234
AcsI	RAATTY	3 cut(s)	48, 445, 782
AcuI	CTGAAG	1 cut(s)	1060
AfaI	GTAC	3 cut(s)	578, 998, 1073
AflII	CTTAAG	1 cut(s)	13
AgsI	TTSAA	5 cut(s)	392, 412, 617, 655, 1018
AluBI	AGCT	8 cut(s)	60, 313, 465, 486, 572, 667, 765, 889
AluI	AGCT	8 cut(s)	60, 313, 465, 486, 572, 667, 765, 889
Alw21I	GWGCWC	1 cut(s)	488
Alw26I	GTCTC	2 cut(s)	72, 890
AlwI	GGATC	2 cut(s)	1153, 1234
Ama87I	CYCGRG	1 cut(s)	893
Aor13HI	TCCGGA	1 cut(s)	1042
AoxI	GGCC	1 cut(s)	378
ApoI	RAATTY	3 cut(s)	48, 445, 782
Asp700I	GAANNNNTTC	1 cut(s)	449
AspS9I	GGNCC	1 cut(s)	940
AsuC2I	CCSGG	2 cut(s)	442, 1186
AsuHPI	GGTGA	1 cut(s)	1072
AvaI	CYCGRG	1 cut(s)	893
AvaII	GGWCC	1 cut(s)	940
BanII	GRGCYC	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	488
BccI	CCATC	4 cut(s)	109, 787, 832, 1214
BclI	TGATCA	1 cut(s)	913
BcnI	CCSGG	2 cut(s)	442, 1186
BcoDI	GTCTC	2 cut(s)	72, 890
BfaI	CTAG	2 cut(s)	768, 1217
BfrI	CTTAAG	1 cut(s)	13
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
BmcAI	AGTACT	1 cut(s)	998
Bme1390I	CCNGG	2 cut(s)	442, 1186
Bme18I	GGWCC	1 cut(s)	940
BmeT110I	CYCGRG	1 cut(s)	893
BmgT120I	GGNCC	1 cut(s)	940
BmiI	GGNNCC	1 cut(s)	123
BmrFI	CCNGG	2 cut(s)	442, 1186
BmsI	GCATC	3 cut(s)	14, 511, 555
BplI	GAGNNNNNCTC	4 cut(s)	46, 78, 155, 187
BpmI	CTGGAG	1 cut(s)	1121
BpuMI	CCSGG	2 cut(s)	442, 1186
BsaBI	GATNNNNATC	1 cut(s)	297
BsaWI	WCCGGW	1 cut(s)	1042
BsaXI	ACNNNNNCTCC	2 cut(s)	782, 812
Bse118I	RCCGGY	1 cut(s)	937
Bse3DI	GCAATG	1 cut(s)	360
Bse8I	GATNNNNATC	1 cut(s)	297
BseAI	TCCGGA	1 cut(s)	1042
BseGI	GGATG	3 cut(s)	966, 1039, 1051
BseJI	GATNNNNATC	1 cut(s)	297
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	4 cut(s)	77, 83, 501, 825
BseRI	GAGGAG	2 cut(s)	772, 899
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	1 cut(s)	133
BshFI	GGCC	1 cut(s)	380
BsiHKAI	GWGCWC	1 cut(s)	488
BsiHKCI	CYCGRG	1 cut(s)	893
BsiSI	CCGG	4 cut(s)	441, 938, 1043, 1185
BslFI	GGGAC	1 cut(s)	507
BsmAI	GTCTC	2 cut(s)	72, 890
BsmFI	GGGAC	1 cut(s)	507
BsmI	GAATGC	1 cut(s)	524
BsnI	GGCC	1 cut(s)	380
BsoBI	CYCGRG	1 cut(s)	893
Bsp1286I	GDGCHC	1 cut(s)	488
Bsp13I	TCCGGA	1 cut(s)	1042
Bsp143I	GATC	5 cut(s)	292, 298, 913, 1145, 1226
Bsp68I	TCGCGA	1 cut(s)	133
BspACI	CCGC	2 cut(s)	158, 161
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	4 cut(s)	76, 82, 500, 826
BspEI	TCCGGA	1 cut(s)	1042
BspFNI	CGCG	1 cut(s)	133
BspHI	TCATGA	2 cut(s)	295, 517
BspLI	GGNNCC	1 cut(s)	123
BspPI	GGATC	2 cut(s)	1153, 1234
BspQI	GCTCTTC	1 cut(s)	1174
BspTI	CTTAAG	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	360
BsrFI	RCCGGY	1 cut(s)	937
BssAI	RCCGGY	1 cut(s)	937
BssMI	GATC	5 cut(s)	292, 298, 913, 1145, 1226
Bst4CI	ACNGT	2 cut(s)	308, 947
Bst6I	CTCTTC	3 cut(s)	31, 442, 1174
BstAFI	CTTAAG	1 cut(s)	13
BstC8I	GCNNGC	5 cut(s)	97, 101, 570, 598, 1171
BstDEI	CTNAG	5 cut(s)	63, 69, 83, 487, 834
BstF5I	GGATG	3 cut(s)	966, 1039, 1051
BstFNI	CGCG	1 cut(s)	133
BstKTI	GATC	5 cut(s)	295, 301, 916, 1148, 1229
BstMAI	GTCTC	2 cut(s)	72, 890
BstMBI	GATC	5 cut(s)	292, 298, 913, 1145, 1226
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 158, 718, 745
BstSCI	CCNGG	2 cut(s)	440, 1184
BstUI	CGCG	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	1226
BstYI	RGATCY	1 cut(s)	1226
BsuRI	GGCC	1 cut(s)	380
BtsCI	GGATG	3 cut(s)	966, 1039, 1051
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	2 cut(s)	453, 943
BtuMI	TCGCGA	1 cut(s)	133
Cac8I	GCNNGC	5 cut(s)	97, 101, 570, 598, 1171
CciI	TCATGA	2 cut(s)	295, 517
Cfr10I	RCCGGY	1 cut(s)	937
Cfr13I	GGNCC	1 cut(s)	940
Csp6I	GTAC	3 cut(s)	577, 997, 1072
CviAII	CATG	6 cut(s)	296, 425, 518, 529, 709, 970
CviQI	GTAC	3 cut(s)	577, 997, 1072
DdeI	CTNAG	5 cut(s)	63, 69, 83, 487, 834
DpnI	GATC	5 cut(s)	294, 300, 915, 1147, 1228
DpnII	GATC	5 cut(s)	292, 298, 913, 1145, 1226
DraI	TTTAAA	1 cut(s)	1036
Eam1104I	CTCTTC	3 cut(s)	31, 442, 1174
EarI	CTCTTC	3 cut(s)	31, 442, 1174
EciI	GGCGGA	1 cut(s)	176
Ecl136II	GAGCTC	1 cut(s)	486
Eco24I	GRGCYC	1 cut(s)	488
Eco32I	GATATC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	940
Eco53kI	GAGCTC	1 cut(s)	486
Eco57I	CTGAAG	1 cut(s)	1060
Eco88I	CYCGRG	1 cut(s)	893
EcoICRI	GAGCTC	1 cut(s)	486
EcoRI	GAATTC	1 cut(s)	782
EcoRV	GATATC	1 cut(s)	318
EcoT22I	ATGCAT	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	488
FaeI	CATG	6 cut(s)	299, 428, 521, 532, 712, 973
FaqI	GGGAC	1 cut(s)	507
FatI	CATG	6 cut(s)	295, 424, 517, 528, 708, 969
FbaI	TGATCA	1 cut(s)	913
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	3 cut(s)	973, 1026, 1058
FriOI	GRGCYC	1 cut(s)	488
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	2 cut(s)	768, 1217
GluI	GCNGC	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	1121
HaeIII	GGCC	1 cut(s)	380
HapII	CCGG	4 cut(s)	441, 938, 1043, 1185
Hin1II	CATG	6 cut(s)	299, 428, 521, 532, 712, 973
HindIII	AAGCTT	1 cut(s)	570
HinfI	GANTC	6 cut(s)	135, 170, 194, 340, 605, 705
HpaII	CCGG	4 cut(s)	441, 938, 1043, 1185
HphI	GGTGA	1 cut(s)	1072
Hpy166II	GTNNAC	2 cut(s)	453, 943
Hpy188III	TCNNGA	8 cut(s)	132, 230, 251, 296, 518, 702, 895, 1043
Hpy8I	GTNNAC	2 cut(s)	453, 943
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	3 cut(s)	155, 737, 862
HpyCH4III	ACNGT	2 cut(s)	308, 947
HpyCH4V	TGCA	6 cut(s)	353, 358, 404, 524, 568, 853
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 158, 718, 745
HpyF3I	CTNAG	5 cut(s)	63, 69, 83, 487, 834
Hsp92II	CATG	6 cut(s)	299, 428, 521, 532, 712, 973
Kpn2I	TCCGGA	1 cut(s)	1042
Ksp22I	TGATCA	1 cut(s)	913
Kzo9I	GATC	5 cut(s)	292, 298, 913, 1145, 1226
LguI	GCTCTTC	1 cut(s)	1174
LmnI	GCTCC	2 cut(s)	874, 886
LweI	GCATC	3 cut(s)	14, 511, 555
MaeI	CTAG	2 cut(s)	768, 1217
MaeIII	GTNAC	2 cut(s)	86, 302
MalI	GATC	5 cut(s)	294, 300, 915, 1147, 1228
MboI	GATC	5 cut(s)	292, 298, 913, 1145, 1226
MboII	GAAGA	8 cut(s)	48, 210, 213, 360, 429, 826, 1191, 1221
MflI	RGATCY	1 cut(s)	1226
MhlI	GDGCHC	1 cut(s)	488
MluCI	AATT	9 cut(s)	48, 260, 412, 445, 505, 555, 650, 658, 782
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	2 cut(s)	534, 954
MnlI	CCTC	8 cut(s)	102, 112, 187, 235, 370, 484, 750, 877
Mph1103I	ATGCAT	1 cut(s)	526
MroI	TCCGGA	1 cut(s)	1042
MroXI	GAANNNNTTC	1 cut(s)	449
MseI	TTAA	5 cut(s)	14, 498, 542, 902, 1035
MslI	CAYNNNNRTG	1 cut(s)	1044
MspCI	CTTAAG	1 cut(s)	13
MspI	CCGG	4 cut(s)	441, 938, 1043, 1185
MspR9I	CCNGG	2 cut(s)	442, 1186
Mva1269I	GAATGC	1 cut(s)	524
MvnI	CGCG	1 cut(s)	133
MwoI	GCNNNNNNNGC	4 cut(s)	79, 158, 718, 745
NciI	CCSGG	2 cut(s)	442, 1186
NdeII	GATC	5 cut(s)	292, 298, 913, 1145, 1226
NlaIII	CATG	6 cut(s)	299, 428, 521, 532, 712, 973
NlaIV	GGNNCC	1 cut(s)	123
NruI	TCGCGA	1 cut(s)	133
NsiI	ATGCAT	1 cut(s)	526
PaeR7I	CTCGAG	1 cut(s)	893
PagI	TCATGA	2 cut(s)	295, 517
PciSI	GCTCTTC	1 cut(s)	1174
PctI	GAATGC	1 cut(s)	524
PdmI	GAANNNNTTC	1 cut(s)	449
PfeI	GAWTC	5 cut(s)	135, 194, 340, 605, 705
PfoI	TCCNGGA	1 cut(s)	440
PkrI	GCNGC	1 cut(s)	160
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PsiI	TTATAA	1 cut(s)	956
Psp124BI	GAGCTC	1 cut(s)	488
PspN4I	GGNNCC	1 cut(s)	123
PspPI	GGNCC	1 cut(s)	940
PsrI	GAACNNNNNNTAC	2 cut(s)	1111, 1143
PsuI	RGATCY	1 cut(s)	1226
RruI	TCGCGA	1 cut(s)	133
RsaI	GTAC	3 cut(s)	578, 998, 1073
RsaNI	GTAC	3 cut(s)	577, 997, 1072
RseI	CAYNNNNRTG	1 cut(s)	1044
SacI	GAGCTC	1 cut(s)	488
SapI	GCTCTTC	1 cut(s)	1174
SaqAI	TTAA	5 cut(s)	14, 498, 542, 902, 1035
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	5 cut(s)	292, 298, 913, 1145, 1226
Sau96I	GGNCC	1 cut(s)	940
ScaI	AGTACT	1 cut(s)	998
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	442, 1186
SduI	GDGCHC	1 cut(s)	488
SfaNI	GCATC	3 cut(s)	14, 511, 555
Sfr274I	CTCGAG	1 cut(s)	893
SinI	GGWCC	1 cut(s)	940
SlaI	CTCGAG	1 cut(s)	893
SmiMI	CAYNNNNRTG	1 cut(s)	1044
SmlI	CTYRAG	2 cut(s)	13, 893
SmoI	CTYRAG	2 cut(s)	13, 893
Sse9I	AATT	9 cut(s)	48, 260, 412, 445, 505, 555, 650, 658, 782
SsiI	CCGC	2 cut(s)	158, 161
SspMI	CTAG	2 cut(s)	768, 1217
SstI	GAGCTC	1 cut(s)	488
StyD4I	CCNGG	2 cut(s)	440, 1184
TaaI	ACNGT	2 cut(s)	308, 947
TaqI	TCGA	4 cut(s)	858, 894, 1148, 1177
TasI	AATT	9 cut(s)	48, 260, 412, 445, 505, 555, 650, 658, 782
TatI	WGTACW	1 cut(s)	996
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	5 cut(s)	135, 194, 340, 605, 705
Tru1I	TTAA	5 cut(s)	14, 498, 542, 902, 1035
Tru9I	TTAA	5 cut(s)	14, 498, 542, 902, 1035
TscAI	CASTG	2 cut(s)	460, 950
TspDTI	ATGAA	5 cut(s)	413, 517, 1149, 1221, 1226
TspRI	CASTG	2 cut(s)	460, 950
Vha464I	CTTAAG	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	940
XapI	RAATTY	3 cut(s)	48, 445, 782
XhoI	CTCGAG	1 cut(s)	893
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	2 cut(s)	768, 1217
ZrmI	AGTACT	1 cut(s)	998
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.