Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Forward (+)

7800284 .. 7803159

Gene Structure 2876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g13810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCTTTCTTAAGTAAGTTTGGGAATGTACTTCGGCAGTCTGCAAGCAAGCAGATCAACTCTGACTTGTCTCCCTTCAAACTGTGGACCCATCAGGCTGTAAGATGCATGTCGTCCATGGGAAGCTCAAAGGTCTTTATAGGAGGTGTATCGTATCAGACAGATGATGCCGGTCTGAGGGAGGCTTTTGGAAGATATGGTGATGTTGTTGATGCACGAATCATCACAGACCGCGAGACTGGCAGATCGAGAGGATTTGGATTTGTTACTTACACTACACCTGAGGAAGCATCAAGTGCCATTCAGGGTTTGGATGGGAAGGATCTTCATGGCCGTATAATAAGGGTGAATTATGCAACTGACAGGCCTCGTGGCAATTTCAGTTATGGTGGTGGTGATGGTAGTTACAGTGGTGGTGGCGGCGGTGGCTACGGGGGTGGCAGTTATGGCGGTAGTTACAGTGGTGGCTACGGTGGTGGCAGGGGCGGAGGCGGCAGTTACAGTGGTGGTGGTGGAGGCGGAGGCGGGCACAACAGCTTTGGCAATGACAGCTATAGTAGGGCCGGTAACTATGGAAGTTTAAACTCATTAGAGATTGCTAGTGGTGGAGGATTTGGCAACAACACAGATTTTGGTCCTCCCAGCGGTGTTGGTACTGGTGGTGCCGATAACTTTGGTGTTGGCGGTGGCAGTGACAATAGCTTTCCTGACGGGGACGATCAGTTTGGCTATCAGAATAGGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

249

Amino Acids

25.12

Weight (kDa)

5.89

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	45 - 114	2.2e-21	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	662
AccII	CGCG	1 cut(s)	234
AclWI	GGATC	1 cut(s)	330
AcoI	YGGCCR	1 cut(s)	331
AfaI	GTAC	2 cut(s)	30, 655
AfiI	CCNNNNNNNGG	2 cut(s)	177, 644
AflII	CTTAAG	1 cut(s)	10
AgsI	TTSAA	1 cut(s)	79
AluBI	AGCT	4 cut(s)	126, 537, 552, 702
AluI	AGCT	4 cut(s)	126, 537, 552, 702
Alw26I	GTCTC	2 cut(s)	75, 230
AlwI	GGATC	1 cut(s)	330
AoxI	GGCC	4 cut(s)	331, 365, 561, 741
ArsI	GACNNNNNNTTYG	2 cut(s)	707, 739
AspS9I	GGNCC	4 cut(s)	87, 561, 635, 741
AsuHPI	GGTGA	3 cut(s)	212, 358, 407
AvaII	GGWCC	2 cut(s)	87, 635
AxyI	CCTNAGG	1 cut(s)	282
BaeGI	GKGCMC	1 cut(s)	531
BanI	GGYRCC	1 cut(s)	662
BauI	CACGAG	1 cut(s)	369
BccI	CCATC	3 cut(s)	99, 308, 392
BceAI	ACGGC	1 cut(s)	318
BcoDI	GTCTC	2 cut(s)	75, 230
BfaI	CTAG	1 cut(s)	600
BfmI	CTRYAG	1 cut(s)	553
BfrI	CTTAAG	1 cut(s)	10
BisI	GCNGC	2 cut(s)	421, 493
BlsI	GCNGC	2 cut(s)	422, 494
Bme18I	GGWCC	2 cut(s)	87, 635
BmgT120I	GGNCC	4 cut(s)	87, 561, 635, 741
BmiI	GGNNCC	2 cut(s)	89, 664
BmsI	GCATC	4 cut(s)	95, 157, 202, 299
BsaJI	CCNNGG	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 644
Bse118I	RCCGGY	2 cut(s)	170, 563
Bse1I	ACTGG	2 cut(s)	244, 661
Bse21I	CCTNAGG	1 cut(s)	282
Bse3DI	GCAATG	1 cut(s)	550
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	2 cut(s)	177, 644
BseMI	GCAATG	1 cut(s)	550
BseMII	CTCAG	2 cut(s)	167, 273
BseNI	ACTGG	2 cut(s)	244, 661
BseSI	GKGCMC	1 cut(s)	531
BseYI	CCCAGC	1 cut(s)	641
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	4 cut(s)	333, 367, 563, 743
BshNI	GGYRCC	1 cut(s)	662
BsiSI	CCGG	2 cut(s)	171, 564
BslFI	GGGAC	1 cut(s)	728
BslI	CCNNNNNNNGG	2 cut(s)	177, 644
BsmAI	GTCTC	2 cut(s)	75, 230
BsmFI	GGGAC	1 cut(s)	728
BsnI	GGCC	4 cut(s)	333, 367, 563, 743
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp143I	GATC	4 cut(s)	54, 245, 322, 718
Bsp19I	CCATGG	1 cut(s)	117
BspANI	GGCC	4 cut(s)	333, 367, 563, 743
BspCNI	CTCAG	2 cut(s)	168, 274
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	89, 664
BspPI	GGATC	1 cut(s)	330
BspT107I	GGYRCC	1 cut(s)	662
BspTI	CTTAAG	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	550
BsrFI	RCCGGY	2 cut(s)	170, 563
BsrI	ACTGG	2 cut(s)	244, 661
BssAI	RCCGGY	2 cut(s)	170, 563
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	4 cut(s)	54, 245, 322, 718
BssSI	CACGAG	1 cut(s)	369
BssT1I	CCWWGG	1 cut(s)	117
Bst2BI	CACGAG	1 cut(s)	369
Bst4CI	ACNGT	5 cut(s)	84, 410, 461, 473, 503
BstAFI	CTTAAG	1 cut(s)	10
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	3 cut(s)	46, 50, 527
BstDEI	CTNAG	2 cut(s)	176, 282
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	319
BstFNI	CGCG	1 cut(s)	234
BstKTI	GATC	4 cut(s)	57, 248, 325, 721
BstMAI	GTCTC	2 cut(s)	75, 230
BstMBI	GATC	4 cut(s)	54, 245, 322, 718
BstMWI	GCNNNNNNNGC	6 cut(s)	240, 296, 426, 447, 492, 549
BstNSI	RCATGY	1 cut(s)	112
BstSFI	CTRYAG	1 cut(s)	553
BstSLI	GKGCMC	1 cut(s)	531
BstUI	CGCG	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
Bsu36I	CCTNAGG	1 cut(s)	282
BsuRI	GGCC	4 cut(s)	333, 367, 563, 743
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	319
BtsI	GCAGTG	1 cut(s)	697
BtsIMutI	CAGTG	4 cut(s)	415, 466, 508, 697
Cac8I	GCNNGC	3 cut(s)	46, 50, 527
Cfr10I	RCCGGY	2 cut(s)	170, 563
Cfr13I	GGNCC	4 cut(s)	87, 561, 635, 741
Csp6I	GTAC	2 cut(s)	29, 654
CviAII	CATG	3 cut(s)	109, 118, 329
CviQI	GTAC	2 cut(s)	29, 654
DdeI	CTNAG	2 cut(s)	176, 282
DpnI	GATC	4 cut(s)	56, 247, 324, 720
DpnII	GATC	4 cut(s)	54, 245, 322, 718
DraI	TTTAAA	1 cut(s)	582
EaeI	YGGCCR	1 cut(s)	331
EciI	GGCGGA	2 cut(s)	501, 534
Eco130I	CCWWGG	1 cut(s)	117
Eco147I	AGGCCT	1 cut(s)	367
Eco47I	GGWCC	2 cut(s)	87, 635
Eco81I	CCTNAGG	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	741
EcoT14I	CCWWGG	1 cut(s)	117
EcoT22I	ATGCAT	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	3 cut(s)	112, 121, 332
FaqI	GGGAC	1 cut(s)	728
FatI	CATG	3 cut(s)	108, 117, 328
FauI	CCCGC	1 cut(s)	518
Fnu4HI	GCNGC	2 cut(s)	421, 493
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	2 cut(s)	421, 493
FspBI	CTAG	1 cut(s)	600
GluI	GCNGC	2 cut(s)	421, 493
GsaI	CCCAGC	1 cut(s)	645
HaeIII	GGCC	4 cut(s)	333, 367, 563, 743
HapII	CCGG	2 cut(s)	171, 564
Hin1II	CATG	3 cut(s)	112, 121, 332
HinfI	GANTC	1 cut(s)	219
HpaII	CCGG	2 cut(s)	171, 564
HphI	GGTGA	3 cut(s)	212, 358, 407
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	4 cut(s)	64, 159, 177, 735
Hpy188III	TCNNGA	2 cut(s)	249, 707
Hpy8I	GTNNAC	1 cut(s)	87
HpyAV	CCTTC	2 cut(s)	85, 313
HpyCH4III	ACNGT	5 cut(s)	84, 410, 461, 473, 503
HpyCH4V	TGCA	4 cut(s)	44, 108, 215, 356
HpyF10VI	GCNNNNNNNGC	6 cut(s)	240, 296, 426, 447, 492, 549
HpyF3I	CTNAG	2 cut(s)	176, 282
Hsp92II	CATG	3 cut(s)	112, 121, 332
Kzo9I	GATC	4 cut(s)	54, 245, 322, 718
LweI	GCATC	4 cut(s)	95, 157, 202, 299
MaeI	CTAG	1 cut(s)	600
MaeIII	GTNAC	6 cut(s)	265, 404, 455, 497, 566, 692
MalI	GATC	4 cut(s)	56, 247, 324, 720
MboI	GATC	4 cut(s)	54, 245, 322, 718
MboII	GAAGA	2 cut(s)	204, 317
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	531
MluCI	AATT	2 cut(s)	349, 376
Mph1103I	ATGCAT	1 cut(s)	110
MseI	TTAA	2 cut(s)	11, 581
MspA1I	CMGCKG	1 cut(s)	645
MspCI	CTTAAG	1 cut(s)	10
MspI	CCGG	2 cut(s)	171, 564
MssI	GTTTAAAC	1 cut(s)	582
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	6 cut(s)	240, 296, 426, 447, 492, 549
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	4 cut(s)	54, 245, 322, 718
NlaIII	CATG	3 cut(s)	112, 121, 332
NlaIV	GGNNCC	2 cut(s)	89, 664
NmuCI	GTSAC	1 cut(s)	692
NsiI	ATGCAT	1 cut(s)	110
NspI	RCATGY	1 cut(s)	112
PceI	AGGCCT	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	219
PkrI	GCNGC	2 cut(s)	422, 494
PmeI	GTTTAAAC	1 cut(s)	582
PspFI	CCCAGC	1 cut(s)	641
PspN4I	GGNNCC	2 cut(s)	89, 664
PspPI	GGNCC	4 cut(s)	87, 561, 635, 741
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	2 cut(s)	30, 655
RsaNI	GTAC	2 cut(s)	29, 654
SaqAI	TTAA	2 cut(s)	11, 581
SatI	GCNGC	2 cut(s)	421, 493
Sau3AI	GATC	4 cut(s)	54, 245, 322, 718
Sau96I	GGNCC	4 cut(s)	87, 561, 635, 741
SduI	GDGCHC	1 cut(s)	531
SetI	ASST	7 cut(s)	128, 135, 148, 283, 539, 554, 704
SfaNI	GCATC	4 cut(s)	95, 157, 202, 299
SfcI	CTRYAG	1 cut(s)	553
SinI	GGWCC	2 cut(s)	87, 635
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	2 cut(s)	349, 376
SseBI	AGGCCT	1 cut(s)	367
SspMI	CTAG	1 cut(s)	600
StuI	AGGCCT	1 cut(s)	367
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	5 cut(s)	84, 410, 461, 473, 503
TaqI	TCGA	1 cut(s)	248
TasI	AATT	2 cut(s)	349, 376
TatI	WGTACW	1 cut(s)	28
TauI	GCSGC	2 cut(s)	423, 495
TfiI	GAWTC	1 cut(s)	219
Tru1I	TTAA	2 cut(s)	11, 581
Tru9I	TTAA	2 cut(s)	11, 581
TscAI	CASTG	4 cut(s)	415, 466, 508, 697
TseFI	GTSAC	1 cut(s)	692
Tsp45I	GTSAC	1 cut(s)	692
TspDTI	ATGAA	1 cut(s)	317
TspRI	CASTG	4 cut(s)	415, 466, 508, 697
Vha464I	CTTAAG	1 cut(s)	10
VpaK11BI	GGWCC	2 cut(s)	87, 635
XceI	RCATGY	1 cut(s)	112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	307
XspI	CTAG	1 cut(s)	600
Zsp2I	ATGCAT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.