Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Forward (+)

58220982 .. 58227422

Gene Structure 6441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0453400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2538 bp

ATGGCTCCTCCGGCCATATCGCAGCGATCTTCGTCGCCGTCGCAGCCCTCCGGAAAAGGCGAAGTGGCGGATGTGAAAGCACAGCTCCGGCTTCTGGCTGGCAGCAGAGCCCCGGGAGCGGATGATTCGAAGCGTGAACTTTTCAAGAAGGTTATCTCTTACATGACGATTGGCATTGATGTGTCCTCTGTTTTTGGAGAGATGGTGATGTGCTCAGCAACGTCCGATATTGTTTTGAAGAAAATGTGTTATCTCTATGTTGGGAATTATGCAAAGGTCAATCCTGACCTCGCACTTTTGACGATCAATTTTCTTCAAAGAGATTGCAAGGATGCAGACCCAATGATCCGTGGTCTTGCTTTGAGGAGCTTGTGTTCGTTACGAGTGACGAATCTGGTGGAGTATTTGGTGGGGCCTTTGGGTGCTGGGTTGAAGGATAATAATAGTTATGTGAGGATGGTAGCAGCTATGGGGGTTCTGAAGCTGTATCACATATCAGCTTCAACTTGTGTCGATGCAGATTTTCCCGCAATGCTTAAGCATTTGTTGCTTAACGATCCAGATACACAGGTGGTTGCAAATTGTTTATCTGCCCTGCAAGAGATTTGGAGTTTAGAAGGAAGCAGCTCTGAGGAGGTATCCAGGGAGAGAGAAATTTTGCTCAGCAAATCAGTTATATACTATCTTTTGAATCGGATTAGGGAATTCAGTGAATGGGCACAATGTCTTGTGCTTGAGTTGGTAGCTAAGTATGTACCCTCAGATAGCAATGAGATATTTGATGTCATGAATCTGCTCGAGGATAGACTGCAGCATGCAAATGGTGCCGTTGTCTTGGCAACCATAAAAGTATTTCTTCAATTGACTTTATCGATGACTGATGTTCATCAGCAGGTATATGAGCGTATTAAAGCTCCTCTTCTAACCTTAGTGAGCTCAGGAAGTCCAGAGCAATCTTATGCAGTTCTAAGCCACCTGCATCTTTTGGTGATGCGTGCTCCTTTCATATTTTCTTCAGACTATAAACACTTTTATTGCCAGTACAATGAGCCATCCTATGTCAAAAAATTGAAGCTTGAGATGTTGACTGCAGTGGCAAATGAGAGCAATACATATGAAATCGTGACGGAATTATGTGAATATGCTGCAAATGTTGATATTCCCATTGCAAGAGAGTCAATCCGTGCGGTTGGTAAAATAGCTCTTCAGCAGTATGATGTGAATGCAATTGTTGATCGGCTTCTTCAGTTTCTGGAGATGGAGAAGGACTATGTAACTGCTGAAGCTCTGGTTCTTGTAAAAGATCTGCTAAGAAAATATCCCCAATGGAGTCAAGATTGCATTGCAGTTGTTGGGAACATAAGCAGCAATAATGTCCAAGAACCCAAGGCCAAGGCGGCTCTTATATGGATGCTGGGCGAGTATTCTCAGGATATGCATGATGCACCTTATATCTTAGAGGGTTTGGTTGAAAATTGGGAGGATGAGCACTCTGCCGAGGTTCGCTTACATCTTCTCACAGCAGTGATGAAGTGCTTTTTTAAGAGGCCACCTGAGACTCAGAATTCCTTGGGAGCTGCACTGGCTGCAGGTCTTGCTGATTTTCACCAGGATGTTCATGATAGAGCCTTATTCTACTACAGGCTTTTGCAATATGACATAAGTGTTGCCGAACGAGTGGTAAACCCTCCAAAGCAAGCTGTTTCTGTCTTTGCTGATACCCAAAGCAGTGAAATCAAAGATCGGATCTTTGATGAATTTAACAGTTTGTCTGTTGTATATCAAAAGCCATCATACATGTTCACTCATAAGGAACACAGAGGTCCTTTCGAGTTTTCAGACGAAATTGGACATGTATCTATTGGGACGGAATCTGCAGATACTGTTGTTCCAGCTAATAGAGTCGAGGCAAATGATAAGGATCTGCTTTTAAGTACATCAGAGAAGGAGGAGACAAAAGTTCCCAATAACAATTCCTCTGCATATAGTGCTCCTTCATACGATCTTACCTCTGTGTCTGTTCCCACTTCTCAACTATCGGATTTGGTGATTTCAAATTCCACTGTGCCAGATGCTCCACAGTCTTCTAGCTTTGCAATTGATGATCTACTTGGATTGGGTTCACCTGCTGCTCCTGCTCCTGCTCCTGCACCTTCGCCTCCTCCTTTGAAGCTTAACCCAAAAGCTGTTTTGGATCCAACTACTTTTCAGCAGAAATGGCGCCAACTGCCCATATCATTATCACAGGATTATTCTATTAACCCTCAAGGTGTTGCGGCATTGACAACGCCCCAATCACTCCTGAAACATATGCAAGGCCATTCCATCCACTGCATCGCTTCTGGTGGCAAATCTCCCAACTTCAAGTTCTTCTTCTTTGCACAAAAAGCAGAAGGATCTTCAACATTTTTGGTAGAATGTATAGTCAACACATCCTCTGCGAAAGCTCAAATAAAGATCAAAGCTGATGATCAGAGTACAACTGAGCCCTTTTCATCTGTATTCCAATCTGCTTTGTCCAAATTTGGCATGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

845

Amino Acids

93.36

Weight (kDa)

5.37

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_N	PF01602	39 - 551	5.2e-94	Adaptin N terminal region
Cnd1	PF12717	115 - 287	7.1e-46	non-SMC mitotic condensation complex subunit 1
B2-adapt-app_C	PF09066	727 - 839	6.1e-25	Beta2-adaptin appendage, C-terminal sub-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	984, 2134
Acc36I	ACCTGC	4 cut(s)	883, 984, 1580, 2134
AccB1I	GGYRCC	2 cut(s)	824, 2220
AccBSI	CCGCTC	1 cut(s)	119
AccIII	TCCGGA	1 cut(s)	50
AciI	CCGC	6 cut(s)	68, 119, 528, 1187, 1397, 2276
AclWI	GGATC	7 cut(s)	340, 551, 1754, 1929, 2189, 2202, 2404
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	6 cut(s)	654, 704, 1564, 1757, 2056, 2522
AcuI	CTGAAG	5 cut(s)	500, 999, 1190, 1229, 1302
AcyI	GRCGYC	1 cut(s)	2221
AfaI	GTAC	4 cut(s)	756, 1043, 1936, 2479
AfiI	CCNNNNNNNGG	2 cut(s)	94, 118
AflII	CTTAAG	1 cut(s)	536
AflIII	ACRYGT	2 cut(s)	1797, 1852
AjnI	CCWGG	2 cut(s)	641, 1608
AjuI	GAANNNNNNNTTGG	2 cut(s)	2351, 2383
AleI	CACNNNNGTG	1 cut(s)	1523
AloI	GAACNNNNNNTCC	2 cut(s)	358, 390
Alw21I	GWGCWC	5 cut(s)	215, 938, 1000, 1491, 1993
Alw26I	GTCTC	2 cut(s)	1550, 1946
AlwI	GGATC	7 cut(s)	340, 551, 1754, 1929, 2189, 2202, 2404
AlwNI	CAGNNNCTG	2 cut(s)	1252, 1883
Ama87I	CYCGRG	2 cut(s)	112, 797
Aor13HI	TCCGGA	1 cut(s)	50
AoxI	GGCC	5 cut(s)	12, 413, 1389, 1547, 2317
ApoI	RAATTY	6 cut(s)	654, 704, 1564, 1757, 2056, 2522
AspLEI	GCGC	1 cut(s)	2223
AspS9I	GGNCC	2 cut(s)	413, 1823
AsuC2I	CCSGG	2 cut(s)	113, 114
AsuHPI	GGTGA	5 cut(s)	217, 1000, 1598, 2059, 2115
AsuII	TTCGAA	1 cut(s)	128
AvaI	CYCGRG	2 cut(s)	112, 797
AvaII	GGWCC	1 cut(s)	1823
BaeGI	GKGCMC	1 cut(s)	721
BaeI	ACNNNNGTAYC	4 cut(s)	555, 588, 1872, 1905
BamHI	GGATCC	1 cut(s)	2194
BanI	GGYRCC	2 cut(s)	824, 2220
BanII	GRGCYC	3 cut(s)	112, 938, 2490
BbsI	GAAGAC	1 cut(s)	2076
Bbv12I	GWGCWC	5 cut(s)	215, 938, 1000, 1491, 1993
BccI	CCATC	6 cut(s)	196, 451, 1060, 1252, 1798, 2333
BceAI	ACGGC	2 cut(s)	22, 812
BciT130I	CCWGG	2 cut(s)	643, 1610
BciVI	GTATCC	1 cut(s)	649
BclI	TGATCA	1 cut(s)	2470
BcnI	CCSGG	2 cut(s)	113, 114
BcoDI	GTCTC	2 cut(s)	1550, 1946
BfaI	CTAG	1 cut(s)	2088
BfmI	CTRYAG	5 cut(s)	809, 1089, 1587, 1639, 1875
BfoI	RGCGCY	1 cut(s)	2224
BfrI	CTTAAG	1 cut(s)	536
BfuAI	ACCTGC	4 cut(s)	883, 984, 1580, 2134
BfuI	GTATCC	1 cut(s)	649
BglI	GCCNNNNNGGC	1 cut(s)	1397
BglII	AGATCT	1 cut(s)	1303
BlpI	GCTNAGC	2 cut(s)	214, 662
Bme1390I	CCNGG	4 cut(s)	113, 114, 643, 1610
Bme18I	GGWCC	1 cut(s)	1823
BmeT110I	CYCGRG	2 cut(s)	112, 797
BmgT120I	GGNCC	2 cut(s)	413, 1823
BmiI	GGNNCC	5 cut(s)	6, 414, 826, 2196, 2222
BmrFI	CCNGG	4 cut(s)	113, 114, 643, 1610
BmsI	GCATC	8 cut(s)	322, 505, 981, 988, 1401, 1432, 2062, 2343
BpiI	GAAGAC	1 cut(s)	2076
BpmI	CTGGAG	1 cut(s)	1274
Bpu10I	CCTNAGC	1 cut(s)	937
Bpu1102I	GCTNAGC	2 cut(s)	214, 662
Bpu14I	TTCGAA	1 cut(s)	128
BpuEI	CTTGAG	3 cut(s)	755, 1097, 2250
BpuMI	CCSGG	2 cut(s)	113, 114
Bsa29I	ATCGAT	1 cut(s)	872
BsaBI	GATNNNNATC	2 cut(s)	885, 1920
BsaHI	GRCGYC	1 cut(s)	2221
BsaJI	CCNNGG	8 cut(s)	111, 112, 349, 642, 1386, 1392, 1497, 1569
BsaWI	WCCGGW	1 cut(s)	50
BsaXI	ACNNNNNCTCC	4 cut(s)	189, 219, 358, 388
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 118
Bse1I	ACTGG	2 cut(s)	1039, 1587
Bse3DI	GCAATG	4 cut(s)	537, 775, 1164, 1341
Bse8I	GATNNNNATC	2 cut(s)	885, 1920
BseAI	TCCGGA	1 cut(s)	50
BseBI	CCWGG	2 cut(s)	643, 1610
BseCI	ATCGAT	1 cut(s)	872
BseDI	CCNNGG	8 cut(s)	111, 112, 349, 642, 1386, 1392, 1497, 1569
BseJI	GATNNNNATC	2 cut(s)	885, 1920
BseLI	CCNNNNNNNGG	2 cut(s)	94, 118
BseMI	GCAATG	4 cut(s)	537, 775, 1164, 1341
BseMII	CTCAG	9 cut(s)	228, 621, 676, 774, 951, 1442, 1545, 1574, 2475
BseNI	ACTGG	2 cut(s)	1039, 1587
BseRI	GAGGAG	5 cut(s)	379, 647, 906, 1964, 2151
BseSI	GKGCMC	1 cut(s)	721
BseYI	CCCAGC	2 cut(s)	425, 1414
BsgI	GTGCAG	2 cut(s)	1563, 2133
BshFI	GGCC	5 cut(s)	14, 415, 1391, 1549, 2319
BshNI	GGYRCC	2 cut(s)	824, 2220
BshVI	ATCGAT	1 cut(s)	872
BsiHKAI	GWGCWC	5 cut(s)	215, 938, 1000, 1491, 1993
BsiHKCI	CYCGRG	2 cut(s)	112, 797
BsiSI	CCGG	4 cut(s)	11, 51, 88, 113
BslFI	GGGAC	1 cut(s)	1879
BslI	CCNNNNNNNGG	2 cut(s)	94, 118
BsmAI	GTCTC	2 cut(s)	1550, 1946
BsmFI	GGGAC	1 cut(s)	1879
BsmI	GAATGC	1 cut(s)	1228
BsnI	GGCC	5 cut(s)	14, 415, 1391, 1549, 2319
BsoBI	CYCGRG	2 cut(s)	112, 797
Bsp119I	TTCGAA	1 cut(s)	128
Bsp1286I	GDGCHC	8 cut(s)	112, 215, 721, 938, 1000, 1491, 1993, 2490
Bsp13I	TCCGGA	1 cut(s)	50
Bsp1720I	GCTNAGC	2 cut(s)	214, 662
BspACI	CCGC	6 cut(s)	68, 119, 528, 1187, 1397, 2276
BspANI	GGCC	5 cut(s)	14, 415, 1391, 1549, 2319
BspCNI	CTCAG	9 cut(s)	227, 622, 675, 773, 950, 1441, 1546, 1573, 2476
BspDI	ATCGAT	1 cut(s)	872
BspEI	TCCGGA	1 cut(s)	50
BspHI	TCATGA	2 cut(s)	786, 1618
BspLI	GGNNCC	5 cut(s)	6, 414, 826, 2196, 2222
BspMAI	CTGCAG	4 cut(s)	813, 1093, 1591, 1879
BspMI	ACCTGC	4 cut(s)	883, 984, 1580, 2134
BspPI	GGATC	7 cut(s)	340, 551, 1754, 1929, 2189, 2202, 2404
BspQI	GCTCTTC	1 cut(s)	1209
BspT104I	TTCGAA	1 cut(s)	128
BspT107I	GGYRCC	2 cut(s)	824, 2220
BspTI	CTTAAG	1 cut(s)	536
BsrBI	CCGCTC	1 cut(s)	119
BsrDI	GCAATG	4 cut(s)	537, 775, 1164, 1341
BsrI	ACTGG	2 cut(s)	1039, 1587
BssECI	CCNNGG	8 cut(s)	111, 112, 349, 642, 1386, 1392, 1497, 1569
BssNI	GRCGYC	1 cut(s)	2221
BssT1I	CCWWGG	3 cut(s)	1386, 1392, 1569
Bst2UI	CCWGG	2 cut(s)	643, 1610
Bst4CI	ACNGT	4 cut(s)	1766, 1885, 2065, 2082
Bst6I	CTCTTC	2 cut(s)	924, 1209
BstACI	GRCGYC	1 cut(s)	2221
BstAFI	CTTAAG	1 cut(s)	536
BstAPI	GCANNNNNTGC	5 cut(s)	547, 824, 1586, 1595, 1988
BstBI	TTCGAA	1 cut(s)	128
BstC8I	GCNNGC	5 cut(s)	100, 816, 996, 1698, 2531
BstDSI	CCRYGG	1 cut(s)	349
BstH2I	RGCGCY	1 cut(s)	2224
BstHHI	GCGC	1 cut(s)	2223
BstMAI	GTCTC	2 cut(s)	1550, 1946
BstNI	CCWGG	2 cut(s)	643, 1610
BstNSI	RCATGY	4 cut(s)	818, 1801, 1856, 2533
BstSCI	CCNGG	4 cut(s)	111, 112, 641, 1608
BstSFI	CTRYAG	5 cut(s)	809, 1089, 1587, 1639, 1875
BstSLI	GKGCMC	1 cut(s)	721
BstV2I	GAAGAC	1 cut(s)	2076
BstX2I	RGATCY	5 cut(s)	1303, 1746, 1921, 2194, 2396
BstYI	RGATCY	5 cut(s)	1303, 1746, 1921, 2194, 2396
Bsu15I	ATCGAT	1 cut(s)	872
BsuI	GTATCC	1 cut(s)	649
BsuRI	GGCC	5 cut(s)	14, 415, 1391, 1549, 2319
BsuTUI	ATCGAT	1 cut(s)	872
BtgI	CCRYGG	1 cut(s)	349
BtgZI	GCGATG	1 cut(s)	2320
BtsI	GCAGTG	4 cut(s)	1098, 1530, 1735, 2329
BtsIMutI	CAGTG	7 cut(s)	715, 1098, 1530, 1580, 1735, 2061, 2329
BveI	ACCTGC	4 cut(s)	883, 984, 1580, 2134
Cac8I	GCNNGC	5 cut(s)	100, 816, 996, 1698, 2531
CaiI	CAGNNNCTG	2 cut(s)	1252, 1883
CciI	TCATGA	2 cut(s)	786, 1618
CfoI	GCGC	1 cut(s)	2223
Cfr13I	GGNCC	2 cut(s)	413, 1823
Cfr9I	CCCGGG	1 cut(s)	112
ClaI	ATCGAT	1 cut(s)	872
Csp6I	GTAC	4 cut(s)	755, 1042, 1935, 2478
CviAII	CATG	9 cut(s)	163, 787, 815, 1439, 1619, 1798, 1853, 2530, 2535
CviQI	GTAC	4 cut(s)	755, 1042, 1935, 2478
DinI	GGCGCC	1 cut(s)	2222
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	2 cut(s)	924, 1209
EarI	CTCTTC	2 cut(s)	924, 1209
EciI	GGCGGA	1 cut(s)	83
Ecl136II	GAGCTC	1 cut(s)	936
Eco130I	CCWWGG	3 cut(s)	1386, 1392, 1569
Eco24I	GRGCYC	3 cut(s)	112, 938, 2490
Eco47I	GGWCC	1 cut(s)	1823
Eco53kI	GAGCTC	1 cut(s)	936
Eco57I	CTGAAG	5 cut(s)	500, 999, 1190, 1229, 1302
Eco88I	CYCGRG	2 cut(s)	112, 797
EcoICRI	GAGCTC	1 cut(s)	936
EcoO109I	RGGNCCY	2 cut(s)	413, 1823
EcoRI	GAATTC	2 cut(s)	704, 1564
EcoRII	CCWGG	2 cut(s)	641, 1608
EcoT14I	CCWWGG	3 cut(s)	1386, 1392, 1569
EcoT22I	ATGCAT	1 cut(s)	1440
EcoT38I	GRGCYC	3 cut(s)	112, 938, 2490
EgeI	GGCGCC	1 cut(s)	2222
EheI	GGCGCC	1 cut(s)	2222
ErhI	CCWWGG	3 cut(s)	1386, 1392, 1569
FaeI	CATG	9 cut(s)	166, 790, 818, 1442, 1622, 1801, 1856, 2533, 2538
FalI	AAGNNNNNCTT	6 cut(s)	840, 872, 903, 935, 2357, 2389
FaqI	GGGAC	1 cut(s)	1879
FatI	CATG	9 cut(s)	162, 786, 814, 1438, 1618, 1797, 1852, 2529, 2534
FauI	CCCGC	1 cut(s)	535
FauNDI	CATATG	2 cut(s)	1114, 2310
FbaI	TGATCA	1 cut(s)	2470
FriOI	GRGCYC	3 cut(s)	112, 938, 2490
FspBI	CTAG	1 cut(s)	2088
GlaI	GCGC	1 cut(s)	2222
GsaI	CCCAGC	2 cut(s)	429, 1418
GsuI	CTGGAG	1 cut(s)	1274
HaeII	RGCGCY	1 cut(s)	2224
HaeIII	GGCC	5 cut(s)	14, 415, 1391, 1549, 2319
HapII	CCGG	4 cut(s)	11, 51, 88, 113
HhaI	GCGC	1 cut(s)	2223
Hin1I	GRCGYC	1 cut(s)	2221
Hin1II	CATG	9 cut(s)	166, 790, 818, 1442, 1622, 1801, 1856, 2533, 2538
Hin6I	GCGC	1 cut(s)	2221
HinP1I	GCGC	1 cut(s)	2221
HincII	GTYRAC	2 cut(s)	1086, 2428
HindII	GTYRAC	2 cut(s)	1086, 2428
HindIII	AAGCTT	2 cut(s)	1073, 2171
HinfI	GANTC	9 cut(s)	125, 391, 691, 790, 1175, 1330, 1558, 1871, 1902
HpaII	CCGG	4 cut(s)	11, 51, 88, 113
HphI	GGTGA	5 cut(s)	217, 1000, 1598, 2059, 2115
Hpy166II	GTNNAC	6 cut(s)	137, 1086, 1684, 1803, 2123, 2428
Hpy8I	GTNNAC	6 cut(s)	137, 1086, 1684, 1803, 2123, 2428
Hpy99I	CGWCG	2 cut(s)	37, 43
HpyAV	CCTTC	8 cut(s)	142, 427, 611, 1258, 1939, 2004, 2163, 2387
HpyCH4III	ACNGT	4 cut(s)	1766, 1885, 2065, 2082
HpyCH4IV	ACGT	1 cut(s)	221
HpySE526I	ACGT	1 cut(s)	221
Hsp92I	GRCGYC	1 cut(s)	2221
Hsp92II	CATG	9 cut(s)	166, 790, 818, 1442, 1622, 1801, 1856, 2533, 2538
HspAI	GCGC	1 cut(s)	2221
KasI	GGCGCC	1 cut(s)	2220
Kpn2I	TCCGGA	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	2470
LguI	GCTCTTC	1 cut(s)	1209
LweI	GCATC	8 cut(s)	322, 505, 981, 988, 1401, 1432, 2062, 2343
MaeI	CTAG	1 cut(s)	2088
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	4 cut(s)	378, 385, 1123, 1273
MbiI	CCGCTC	1 cut(s)	119
MfeI	CAATTG	3 cut(s)	860, 1227, 2097
MflI	RGATCY	5 cut(s)	1303, 1746, 1921, 2194, 2396
MhlI	GDGCHC	8 cut(s)	112, 215, 721, 938, 1000, 1491, 1993, 2490
Mly113I	GGCGCC	1 cut(s)	2221
MlyI	GAGTC	4 cut(s)	1184, 1339, 1552, 1911
MmeI	TCCRAC	1 cut(s)	2222
Mph1103I	ATGCAT	1 cut(s)	1440
MroI	TCCGGA	1 cut(s)	50
MseI	TTAA	8 cut(s)	537, 552, 909, 1542, 1761, 1931, 2175, 2259
MslI	CAYNNNNRTG	4 cut(s)	179, 819, 1523, 1611
MspCI	CTTAAG	1 cut(s)	536
MspI	CCGG	4 cut(s)	11, 51, 88, 113
MspR9I	CCNGG	4 cut(s)	113, 114, 643, 1610
MunI	CAATTG	3 cut(s)	860, 1227, 2097
Mva1269I	GAATGC	1 cut(s)	1228
MvaI	CCWGG	2 cut(s)	643, 1610
NarI	GGCGCC	1 cut(s)	2221
NciI	CCSGG	2 cut(s)	113, 114
NdeI	CATATG	2 cut(s)	1114, 2310
NlaIII	CATG	9 cut(s)	166, 790, 818, 1442, 1622, 1801, 1856, 2533, 2538
NlaIV	GGNNCC	5 cut(s)	6, 414, 826, 2196, 2222
NmeAIII	GCCGAG	1 cut(s)	1522
NmuCI	GTSAC	2 cut(s)	385, 1123
NsiI	ATGCAT	1 cut(s)	1440
NspI	RCATGY	4 cut(s)	818, 1801, 1856, 2533
NspV	TTCGAA	1 cut(s)	128
OliI	CACNNNNGTG	1 cut(s)	1523
PaeI	GCATGC	2 cut(s)	818, 2533
PaeR7I	CTCGAG	1 cut(s)	797
PagI	TCATGA	2 cut(s)	786, 1618
PaqCI	CACCTGC	2 cut(s)	984, 2134
PciI	ACATGT	2 cut(s)	1797, 1852
PciSI	GCTCTTC	1 cut(s)	1209
PctI	GAATGC	1 cut(s)	1228
PfeI	GAWTC	5 cut(s)	125, 391, 691, 790, 1871
PleI	GAGTC	4 cut(s)	1183, 1338, 1552, 1910
PluTI	GGCGCC	1 cut(s)	2224
PpsI	GAGTC	4 cut(s)	1183, 1338, 1552, 1910
PpuMI	RGGWCCY	1 cut(s)	1823
PscI	ACATGT	2 cut(s)	1797, 1852
Psp124BI	GAGCTC	1 cut(s)	938
Psp5II	RGGWCCY	1 cut(s)	1823
Psp6I	CCWGG	2 cut(s)	641, 1608
PspFI	CCCAGC	2 cut(s)	425, 1414
PspGI	CCWGG	2 cut(s)	641, 1608
PspN4I	GGNNCC	5 cut(s)	6, 414, 826, 2196, 2222
PspPI	GGNCC	2 cut(s)	413, 1823
PspPPI	RGGWCCY	1 cut(s)	1823
PspXI	VCTCGAGB	1 cut(s)	797
PstI	CTGCAG	4 cut(s)	813, 1093, 1591, 1879
PstNI	CAGNNNCTG	2 cut(s)	1252, 1883
PsuI	RGATCY	5 cut(s)	1303, 1746, 1921, 2194, 2396
RsaI	GTAC	4 cut(s)	756, 1043, 1936, 2479
RsaNI	GTAC	4 cut(s)	755, 1042, 1935, 2478
RseI	CAYNNNNRTG	4 cut(s)	179, 819, 1523, 1611
SacI	GAGCTC	1 cut(s)	938
SapI	GCTCTTC	1 cut(s)	1209
SaqAI	TTAA	8 cut(s)	537, 552, 909, 1542, 1761, 1931, 2175, 2259
Sau96I	GGNCC	2 cut(s)	413, 1823
SchI	GAGTC	4 cut(s)	1184, 1339, 1552, 1911
ScrFI	CCNGG	4 cut(s)	113, 114, 643, 1610
SduI	GDGCHC	8 cut(s)	112, 215, 721, 938, 1000, 1491, 1993, 2490
SfaNI	GCATC	8 cut(s)	322, 505, 981, 988, 1401, 1432, 2062, 2343
SfcI	CTRYAG	5 cut(s)	809, 1089, 1587, 1639, 1875
SfoI	GGCGCC	1 cut(s)	2222
Sfr274I	CTCGAG	1 cut(s)	797
SfuI	TTCGAA	1 cut(s)	128
SinI	GGWCC	1 cut(s)	1823
SlaI	CTCGAG	1 cut(s)	797
SmaI	CCCGGG	1 cut(s)	114
SmiMI	CAYNNNNRTG	4 cut(s)	179, 819, 1523, 1611
SmlI	CTYRAG	5 cut(s)	536, 734, 797, 1076, 2265
SmoI	CTYRAG	5 cut(s)	536, 734, 797, 1076, 2265
SphI	GCATGC	2 cut(s)	818, 2533
SsiI	CCGC	6 cut(s)	68, 119, 528, 1187, 1397, 2276
SspDI	GGCGCC	1 cut(s)	2220
SspMI	CTAG	1 cut(s)	2088
SstI	GAGCTC	1 cut(s)	938
StyD4I	CCNGG	4 cut(s)	111, 112, 641, 1608
StyI	CCWWGG	3 cut(s)	1386, 1392, 1569
TaaI	ACNGT	4 cut(s)	1766, 1885, 2065, 2082
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	6 cut(s)	128, 513, 798, 872, 1830, 1905
TatI	WGTACW	3 cut(s)	1041, 1934, 2477
TauI	GCSGC	2 cut(s)	1400, 2279
TfiI	GAWTC	5 cut(s)	125, 391, 691, 790, 1871
Tru1I	TTAA	8 cut(s)	537, 552, 909, 1542, 1761, 1931, 2175, 2259
Tru9I	TTAA	8 cut(s)	537, 552, 909, 1542, 1761, 1931, 2175, 2259
TscAI	CASTG	7 cut(s)	715, 1098, 1530, 1587, 1735, 2068, 2336
TseFI	GTSAC	2 cut(s)	385, 1123
Tsp45I	GTSAC	2 cut(s)	385, 1123
TspDTI	ATGAA	9 cut(s)	803, 875, 994, 1131, 1544, 1607, 1770, 1986, 2484
TspGWI	ACGGA	4 cut(s)	338, 1142, 1172, 1883
TspMI	CCCGGG	1 cut(s)	112
TspRI	CASTG	7 cut(s)	715, 1098, 1530, 1587, 1735, 2068, 2336
Vha464I	CTTAAG	1 cut(s)	536
VpaK11BI	GGWCC	1 cut(s)	1823
XapI	RAATTY	6 cut(s)	654, 704, 1564, 1757, 2056, 2522
XceI	RCATGY	4 cut(s)	818, 1801, 1856, 2533
XhoI	CTCGAG	1 cut(s)	797
XmaI	CCCGGG	1 cut(s)	112
XspI	CTAG	1 cut(s)	2088
Zsp2I	ATGCAT	1 cut(s)	1440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.