Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Reverse (-)

4162659 .. 4164910

Gene Structure 2252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG057000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCGTTCTTGAGTAAATTTGGCAATATACTTAGGCAGACCGCAACCAGGCAGATCAGATCTGAATTGGCTCCTTCCAAGCCGTCGATTTTTCAGGCCATAAGATGCATGTCAACTGGGCCAAGTTCTAAACTATTTATTGGAGGTGTGTCATTTCAGAGTGATGAGCAAAGTTTGAGGGAAGAATTTGCCAAATATGGTGAAGTTGTTGATGTAAGAATCATCACAGACCGTGACACTGGTAGATCGAGAGGCTTTGGATTCGTTACTTACACATCTAGCGAGGAGGCATCAAGTGCCATCCAGGCCTTGGATGGTCAGGAGCTTCATGGCCGCCGCGTCAGGGTGAATTATGCTACTGATAGGCCTCGGACTAACTTTGGAGGAGGTGGTTATGGTGGTGATGGTGGTTACCCGAGAGGTGGTGGAGGATATGGTGGTGGAGGTGGCGGTTATGGAGGTGGCAGCTACGGTTCTGGGAACTCTGGTGGTGGATACGGTGGAAGTGGAGTTGGCTACAACAGCGGGGGCACTTTTGATAATGCTAGCACTGGTGGTTTTGGTGGTACTGACAACAGCTTTTCCACTGGTGGAGCTCAATTTGGAGAGGACAAAAGTGGCTTCGATGAGCCATTAGAAGGAAACAATAGGGATGATGATGACACTGCAGACTTCGAAAAAAGGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

229

Amino Acids

23.75

Weight (kDa)

5.02

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	45 - 115	6.8e-22	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	310
AccII	CGCG	1 cut(s)	339
AciI	CCGC	5 cut(s)	42, 334, 337, 450, 525
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	2 cut(s)	17, 185
AfaI	GTAC	1 cut(s)	568
AfiI	CCNNNNNNNGG	5 cut(s)	48, 310, 343, 422, 638
AjnI	CCWGG	2 cut(s)	47, 303
AluBI	AGCT	4 cut(s)	325, 468, 579, 596
AluI	AGCT	4 cut(s)	325, 468, 579, 596
Alw21I	GWGCWC	1 cut(s)	598
Ama87I	CYCGRG	1 cut(s)	415
AoxI	GGCC	6 cut(s)	96, 119, 306, 331, 365, 684
ApeKI	GCWGC	1 cut(s)	465
ApoI	RAATTY	2 cut(s)	17, 185
AspS9I	GGNCC	2 cut(s)	119, 684
AsuHPI	GGTGA	3 cut(s)	212, 358, 413
AsuII	TTCGAA	1 cut(s)	675
AsuNHI	GCTAGC	1 cut(s)	545
AvaI	CYCGRG	1 cut(s)	415
BaeGI	GKGCMC	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	598
Bbv12I	GWGCWC	1 cut(s)	598
BbvI	GCAGC	1 cut(s)	477
BccI	CCATC	3 cut(s)	308, 308, 398
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	2 cut(s)	49, 305
BciVI	GTATCC	1 cut(s)	488
BfaI	CTAG	2 cut(s)	279, 546
BfmI	CTRYAG	1 cut(s)	666
BfuI	GTATCC	1 cut(s)	488
BglI	GCCNNNNNGGC	1 cut(s)	305
BglII	AGATCT	1 cut(s)	59
BisI	GCNGC	3 cut(s)	334, 337, 466
BlsI	GCNGC	3 cut(s)	335, 338, 467
Bme1390I	CCNGG	2 cut(s)	49, 305
BmeT110I	CYCGRG	1 cut(s)	415
BmgT120I	GGNCC	2 cut(s)	119, 684
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	2 cut(s)	49, 305
BmrI	ACTGGG	1 cut(s)	126
BmsI	GCATC	2 cut(s)	95, 299
BmtI	GCTAGC	1 cut(s)	549
BmuI	ACTGGG	1 cut(s)	126
Bpu14I	TTCGAA	1 cut(s)	675
BpuEI	CTTGAG	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	309, 368
Bsc4I	CCNNNNNNNGG	5 cut(s)	48, 310, 343, 422, 638
Bse1I	ACTGG	4 cut(s)	121, 244, 556, 592
BseBI	CCWGG	2 cut(s)	49, 305
BseDI	CCNNGG	2 cut(s)	309, 368
BseGI	GGATG	3 cut(s)	300, 319, 658
BseLI	CCNNNNNNNGG	5 cut(s)	48, 310, 343, 422, 638
BseNI	ACTGG	4 cut(s)	121, 244, 556, 592
BseRI	GAGGAG	2 cut(s)	299, 399
BseSI	GKGCMC	1 cut(s)	533
BseXI	GCAGC	1 cut(s)	477
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	6 cut(s)	98, 121, 308, 333, 367, 686
BsiHKAI	GWGCWC	1 cut(s)	598
BsiHKCI	CYCGRG	1 cut(s)	415
BslI	CCNNNNNNNGG	5 cut(s)	48, 310, 343, 422, 638
BsnI	GGCC	6 cut(s)	98, 121, 308, 333, 367, 686
BsoBI	CYCGRG	1 cut(s)	415
Bsp119I	TTCGAA	1 cut(s)	675
Bsp1286I	GDGCHC	2 cut(s)	533, 598
Bsp143I	GATC	3 cut(s)	54, 59, 245
BspACI	CCGC	5 cut(s)	42, 334, 337, 450, 525
BspANI	GGCC	6 cut(s)	98, 121, 308, 333, 367, 686
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	1 cut(s)	72
BspMAI	CTGCAG	1 cut(s)	670
BspOI	GCTAGC	1 cut(s)	549
BspT104I	TTCGAA	1 cut(s)	675
BsrI	ACTGG	4 cut(s)	121, 244, 556, 592
BssECI	CCNNGG	2 cut(s)	309, 368
BssMI	GATC	3 cut(s)	54, 59, 245
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	2 cut(s)	49, 305
Bst4CI	ACNGT	3 cut(s)	233, 473, 500
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstBI	TTCGAA	1 cut(s)	675
BstC8I	GCNNGC	1 cut(s)	547
BstDEI	CTNAG	1 cut(s)	32
BstEII	GGTNACC	1 cut(s)	410
BstF5I	GGATG	3 cut(s)	300, 319, 658
BstFNI	CGCG	1 cut(s)	339
BstKTI	GATC	3 cut(s)	57, 62, 248
BstMBI	GATC	3 cut(s)	54, 59, 245
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 305, 522
BstNI	CCWGG	2 cut(s)	49, 305
BstNSI	RCATGY	1 cut(s)	112
BstPI	GGTNACC	1 cut(s)	410
BstSCI	CCNGG	2 cut(s)	47, 303
BstSFI	CTRYAG	1 cut(s)	666
BstSLI	GKGCMC	1 cut(s)	533
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	477
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BsuI	GTATCC	1 cut(s)	488
BsuRI	GGCC	6 cut(s)	98, 121, 308, 333, 367, 686
BtsCI	GGATG	3 cut(s)	300, 319, 658
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	4 cut(s)	237, 549, 585, 663
Cac8I	GCNNGC	1 cut(s)	547
Cfr13I	GGNCC	2 cut(s)	119, 684
CseI	GACGC	1 cut(s)	328
Csp6I	GTAC	1 cut(s)	567
CviAII	CATG	2 cut(s)	109, 329
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	3 cut(s)	56, 61, 247
DpnII	GATC	3 cut(s)	54, 59, 245
EaeI	YGGCCR	1 cut(s)	331
Ecl136II	GAGCTC	1 cut(s)	596
Eco130I	CCWWGG	1 cut(s)	309
Eco147I	AGGCCT	2 cut(s)	308, 367
Eco24I	GRGCYC	1 cut(s)	598
Eco53kI	GAGCTC	1 cut(s)	596
Eco88I	CYCGRG	1 cut(s)	415
Eco91I	GGTNACC	1 cut(s)	410
EcoICRI	GAGCTC	1 cut(s)	596
EcoO109I	RGGNCCY	1 cut(s)	684
EcoO65I	GGTNACC	1 cut(s)	410
EcoRII	CCWGG	2 cut(s)	47, 303
EcoT14I	CCWWGG	1 cut(s)	309
EcoT22I	ATGCAT	1 cut(s)	110
EcoT38I	GRGCYC	1 cut(s)	598
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	2 cut(s)	112, 332
FaiI	YATR	9 cut(s)	29, 101, 110, 198, 330, 354, 396, 435, 456
FatI	CATG	2 cut(s)	108, 328
FauI	CCCGC	1 cut(s)	518
Fnu4HI	GCNGC	3 cut(s)	334, 337, 466
FokI	GGATG	3 cut(s)	287, 326, 665
FriOI	GRGCYC	1 cut(s)	598
Fsp4HI	GCNGC	3 cut(s)	334, 337, 466
FspBI	CTAG	2 cut(s)	279, 546
GluI	GCNGC	3 cut(s)	334, 337, 466
HaeIII	GGCC	6 cut(s)	98, 121, 308, 333, 367, 686
HgaI	GACGC	1 cut(s)	328
Hin1II	CATG	2 cut(s)	112, 332
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	2 cut(s)	219, 261
HphI	GGTGA	3 cut(s)	212, 358, 413
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	4 cut(s)	59, 64, 159, 372
Hpy188III	TCNNGA	3 cut(s)	10, 249, 320
Hpy8I	GTNNAC	1 cut(s)	114
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	2 cut(s)	84, 632
HpyCH4III	ACNGT	3 cut(s)	233, 473, 500
HpyCH4V	TGCA	2 cut(s)	108, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 305, 522
HpyF3I	CTNAG	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	112, 332
Kzo9I	GATC	3 cut(s)	54, 59, 245
LmnI	GCTCC	3 cut(s)	76, 322, 593
Lsp1109I	GCAGC	1 cut(s)	477
LweI	GCATC	2 cut(s)	95, 299
MaeI	CTAG	2 cut(s)	279, 546
MaeIII	GTNAC	3 cut(s)	233, 265, 410
MalI	GATC	3 cut(s)	56, 61, 247
MboI	GATC	3 cut(s)	54, 59, 245
MboII	GAAGA	1 cut(s)	194
MflI	RGATCY	1 cut(s)	59
MhlI	GDGCHC	2 cut(s)	533, 598
MluCI	AATT	5 cut(s)	17, 65, 185, 349, 599
Mph1103I	ATGCAT	1 cut(s)	110
MspA1I	CMGCKG	1 cut(s)	525
MspR9I	CCNGG	2 cut(s)	49, 305
MvaI	CCWGG	2 cut(s)	49, 305
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	3 cut(s)	296, 305, 522
NdeII	GATC	3 cut(s)	54, 59, 245
NheI	GCTAGC	1 cut(s)	545
NlaIII	CATG	2 cut(s)	112, 332
NlaIV	GGNNCC	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	233
NsiI	ATGCAT	1 cut(s)	110
NspI	RCATGY	1 cut(s)	112
NspV	TTCGAA	1 cut(s)	675
PceI	AGGCCT	2 cut(s)	308, 367
PfeI	GAWTC	2 cut(s)	219, 261
PflMI	CCANNNNNTGG	1 cut(s)	310
PkrI	GCNGC	3 cut(s)	335, 338, 467
Psp124BI	GAGCTC	1 cut(s)	598
Psp6I	CCWGG	2 cut(s)	47, 303
PspEI	GGTNACC	1 cut(s)	410
PspGI	CCWGG	2 cut(s)	47, 303
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	2 cut(s)	119, 684
PstI	CTGCAG	1 cut(s)	670
PsuI	RGATCY	1 cut(s)	59
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
SacI	GAGCTC	1 cut(s)	598
SatI	GCNGC	3 cut(s)	334, 337, 466
Sau3AI	GATC	3 cut(s)	54, 59, 245
Sau96I	GGNCC	2 cut(s)	119, 684
ScrFI	CCNGG	2 cut(s)	49, 305
SduI	GDGCHC	2 cut(s)	533, 598
SetI	ASST	9 cut(s)	148, 327, 391, 424, 448, 463, 470, 581, 598
SfaNI	GCATC	2 cut(s)	95, 299
SfcI	CTRYAG	1 cut(s)	666
SfuI	TTCGAA	1 cut(s)	675
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	5 cut(s)	17, 65, 185, 349, 599
SseBI	AGGCCT	2 cut(s)	308, 367
SsiI	CCGC	5 cut(s)	42, 334, 337, 450, 525
SspMI	CTAG	2 cut(s)	279, 546
SstI	GAGCTC	1 cut(s)	598
StuI	AGGCCT	2 cut(s)	308, 367
StyD4I	CCNGG	2 cut(s)	47, 303
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	3 cut(s)	233, 473, 500
TaqI	TCGA	4 cut(s)	86, 248, 624, 675
TasI	AATT	5 cut(s)	17, 65, 185, 349, 599
TauI	GCSGC	2 cut(s)	336, 339
TfiI	GAWTC	2 cut(s)	219, 261
TscAI	CASTG	4 cut(s)	244, 556, 592, 670
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	1 cut(s)	465
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	317
TspRI	CASTG	4 cut(s)	244, 556, 592, 670
Van91I	CCANNNNNTGG	1 cut(s)	310
XapI	RAATTY	2 cut(s)	17, 185
XceI	RCATGY	1 cut(s)	112
XcmI	CCANNNNNNNNNTGG	2 cut(s)	307, 311
XspI	CTAG	2 cut(s)	279, 546
Zsp2I	ATGCAT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.