Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Reverse (-)

7834657 .. 7836173

Gene Structure 1517 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031728

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGACAGATGATGGCAGTCTGAGGGAGGCTTTTGCAAGATATGGAGATGTTGTTGATGCACGGATCATCACAGACCGCGAGAGTGGTAGATCAAGAGGATTTGGATTTGTTACTTACGCTACACCTGAGGGTGCATCAAGTGCCATTCAGGCCTTGGATGGGAAGGATCTTCATGGCCGTGTAATAAGGGTGAATTATGCAAATGAGAGGCCTCCTCGTAGTAGCTTTGGTTATGGTGGAGGTGATGGCGGTTACGGGGGTGGCGGAGGCAGTTACGGTGGTGGCGGAGGCGGTTACAGTGGTGGTGGAGGCGGTTACAGTGGTGGTGGAGGCGGCTACAACAGCTATGGCAATGACAGTTATAATAGTGGTGGTAATTATGGAAGTGGAAACTCTTTTGAAACTGCTAGTGGTGGAGGTTATGGCAATAGCACAAATTTTGCTCCTCATGGTAGTGTTGCTACTGGTAGTGCCGATAACTTTGGAGTTGGTGGTGGTGACAGCAGCTTTCCCACCGGTGGAGGTTTTGGTGATAGCCCAAATTATGGTTCTCCTGGTAGTGTTGGAACTGGTGGTGCCGATAACTTCGGTGTTGGTGGCAGTGATGACAGTAGCTTTTCCAACAGGGACGATGAGTTAAGCTATCAGAGTAGGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

220

Amino Acids

21.49

Weight (kDa)

4.44

Isoelectric Point (pI)

35.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	3 - 63	9.7e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	363
AccB1I	GGYRCC	1 cut(s)	575
AccB7I	CCANNNNNTGG	1 cut(s)	545
AccII	CGCG	1 cut(s)	78
AciI	CCGC	7 cut(s)	76, 249, 264, 285, 291, 312, 333
AclWI	GGATC	2 cut(s)	71, 174
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	436
AfiI	CCNNNNNNNGG	3 cut(s)	159, 518, 545
AgeI	ACCGGT	1 cut(s)	515
AgsI	TTSAA	1 cut(s)	401
AjnI	CCWGG	1 cut(s)	553
AjuI	GAANNNNNNNTTGG	2 cut(s)	532, 564
AluBI	AGCT	5 cut(s)	225, 345, 507, 615, 642
AluI	AGCT	5 cut(s)	225, 345, 507, 615, 642
AlwI	GGATC	2 cut(s)	71, 174
AoxI	GGCC	4 cut(s)	150, 175, 209, 654
ApeKI	GCWGC	1 cut(s)	504
ApoI	RAATTY	1 cut(s)	436
AsiGI	ACCGGT	1 cut(s)	515
AspS9I	GGNCC	1 cut(s)	654
AsuHPI	GGTGA	4 cut(s)	202, 254, 509, 542
AxyI	CCTNAGG	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	575
BbvI	GCAGC	1 cut(s)	516
BccI	CCATC	3 cut(s)	5, 152, 239
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	555
BfaI	CTAG	1 cut(s)	408
BglI	GCCNNNNNGGC	1 cut(s)	149
BisI	GCNGC	2 cut(s)	334, 505
BlsI	GCNGC	2 cut(s)	335, 506
Bme1390I	CCNGG	1 cut(s)	555
BmgT120I	GGNCC	1 cut(s)	654
BmiI	GGNNCC	1 cut(s)	577
BmrFI	CCNGG	1 cut(s)	555
BmsI	GCATC	2 cut(s)	46, 143
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
BsaJI	CCNNGG	1 cut(s)	153
BsaWI	WCCGGW	1 cut(s)	515
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 518, 545
Bse118I	RCCGGY	1 cut(s)	515
Bse1I	ACTGG	2 cut(s)	469, 574
Bse21I	CCTNAGG	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	555
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	3 cut(s)	159, 518, 545
BseMI	GCAATG	1 cut(s)	358
BseMII	CTCAG	2 cut(s)	11, 117
BseNI	ACTGG	2 cut(s)	469, 574
BseRI	GAGGAG	2 cut(s)	204, 435
BseXI	GCAGC	1 cut(s)	516
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	4 cut(s)	152, 177, 211, 656
BshNI	GGYRCC	1 cut(s)	575
BshTI	ACCGGT	1 cut(s)	515
BsiSI	CCGG	1 cut(s)	516
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	3 cut(s)	159, 518, 545
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	4 cut(s)	152, 177, 211, 656
Bsp143I	GATC	3 cut(s)	63, 89, 166
BspACI	CCGC	7 cut(s)	76, 249, 264, 285, 291, 312, 333
BspANI	GGCC	4 cut(s)	152, 177, 211, 656
BspCNI	CTCAG	2 cut(s)	12, 118
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	577
BspPI	GGATC	2 cut(s)	71, 174
BspT107I	GGYRCC	1 cut(s)	575
BsrDI	GCAATG	1 cut(s)	358
BsrFI	RCCGGY	1 cut(s)	515
BsrI	ACTGG	2 cut(s)	469, 574
BssAI	RCCGGY	1 cut(s)	515
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	3 cut(s)	63, 89, 166
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	555
Bst4CI	ACNGT	5 cut(s)	278, 299, 320, 359, 611
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstDEI	CTNAG	2 cut(s)	20, 126
BstF5I	GGATG	1 cut(s)	163
BstFNI	CGCG	1 cut(s)	78
BstKTI	GATC	3 cut(s)	66, 92, 169
BstMBI	GATC	3 cut(s)	63, 89, 166
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 149, 342
BstNI	CCWGG	1 cut(s)	555
BstSCI	CCNGG	1 cut(s)	553
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	516
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
Bsu36I	CCTNAGG	1 cut(s)	126
BsuRI	GGCC	4 cut(s)	152, 177, 211, 656
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	607
BtsIMutI	CAGTG	3 cut(s)	304, 325, 607
Cfr10I	RCCGGY	1 cut(s)	515
Cfr13I	GGNCC	1 cut(s)	654
CspAI	ACCGGT	1 cut(s)	515
CviAII	CATG	2 cut(s)	173, 449
DdeI	CTNAG	2 cut(s)	20, 126
DpnI	GATC	3 cut(s)	65, 91, 168
DpnII	GATC	3 cut(s)	63, 89, 166
EaeI	YGGCCR	1 cut(s)	175
EciI	GGCGGA	2 cut(s)	279, 300
Eco130I	CCWWGG	1 cut(s)	153
Eco147I	AGGCCT	2 cut(s)	152, 211
Eco81I	CCTNAGG	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	654
EcoRII	CCWGG	1 cut(s)	553
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	2 cut(s)	176, 452
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	2 cut(s)	172, 448
Fnu4HI	GCNGC	2 cut(s)	334, 505
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	2 cut(s)	334, 505
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	2 cut(s)	334, 505
HaeIII	GGCC	4 cut(s)	152, 177, 211, 656
HapII	CCGG	1 cut(s)	516
Hin1II	CATG	2 cut(s)	176, 452
HpaII	CCGG	1 cut(s)	516
HphI	GGTGA	4 cut(s)	202, 254, 509, 542
Hpy188I	TCNGA	2 cut(s)	21, 648
Hpy188III	TCNNGA	1 cut(s)	93
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	5 cut(s)	278, 299, 320, 359, 611
HpyCH4V	TGCA	4 cut(s)	35, 59, 134, 200
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 149, 342
HpyF3I	CTNAG	2 cut(s)	20, 126
Hsp92II	CATG	2 cut(s)	176, 452
Kzo9I	GATC	3 cut(s)	63, 89, 166
LmnI	GCTCC	1 cut(s)	448
LpnPI	CCDG	8 cut(s)	134, 138, 450, 529, 540, 555, 567, 610
Lsp1109I	GCAGC	1 cut(s)	516
LweI	GCATC	2 cut(s)	46, 143
MaeI	CTAG	1 cut(s)	408
MaeIII	GTNAC	6 cut(s)	109, 251, 272, 293, 314, 497
MalI	GATC	3 cut(s)	65, 91, 168
MboI	GATC	3 cut(s)	63, 89, 166
MboII	GAAGA	1 cut(s)	161
MflI	RGATCY	1 cut(s)	166
MluCI	AATT	4 cut(s)	193, 376, 436, 541
MmeI	TCCRAC	2 cut(s)	544, 645
MseI	TTAA	1 cut(s)	638
MslI	CAYNNNNRTG	2 cut(s)	177, 453
MspI	CCGG	1 cut(s)	516
MspR9I	CCNGG	1 cut(s)	555
MvaI	CCWGG	1 cut(s)	555
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	3 cut(s)	140, 149, 342
NdeII	GATC	3 cut(s)	63, 89, 166
NlaIII	CATG	2 cut(s)	176, 452
NlaIV	GGNNCC	1 cut(s)	577
NmuCI	GTSAC	1 cut(s)	497
PceI	AGGCCT	2 cut(s)	152, 211
PflMI	CCANNNNNTGG	1 cut(s)	545
PinAI	ACCGGT	1 cut(s)	515
PkrI	GCNGC	2 cut(s)	335, 506
PsiI	TTATAA	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	553
PspN4I	GGNNCC	1 cut(s)	577
PspPI	GGNCC	1 cut(s)	654
PsuI	RGATCY	1 cut(s)	166
RseI	CAYNNNNRTG	2 cut(s)	177, 453
SaqAI	TTAA	1 cut(s)	638
SatI	GCNGC	2 cut(s)	334, 505
Sau3AI	GATC	3 cut(s)	63, 89, 166
Sau96I	GGNCC	1 cut(s)	654
ScrFI	CCNGG	1 cut(s)	555
SetI	ASST	9 cut(s)	127, 227, 244, 347, 421, 509, 526, 617, 644
SfaNI	GCATC	2 cut(s)	46, 143
SgrAI	CRCCGGYG	1 cut(s)	515
SmiMI	CAYNNNNRTG	2 cut(s)	177, 453
Sse9I	AATT	4 cut(s)	193, 376, 436, 541
SseBI	AGGCCT	2 cut(s)	152, 211
SsiI	CCGC	7 cut(s)	76, 249, 264, 285, 291, 312, 333
SspMI	CTAG	1 cut(s)	408
StuI	AGGCCT	2 cut(s)	152, 211
StyD4I	CCNGG	1 cut(s)	553
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	5 cut(s)	278, 299, 320, 359, 611
TasI	AATT	4 cut(s)	193, 376, 436, 541
TauI	GCSGC	1 cut(s)	336
Tru1I	TTAA	1 cut(s)	638
Tru9I	TTAA	1 cut(s)	638
TscAI	CASTG	3 cut(s)	304, 325, 607
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	1 cut(s)	504
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	1 cut(s)	161
TspGWI	ACGGA	1 cut(s)	76
TspRI	CASTG	3 cut(s)	304, 325, 607
Van91I	CCANNNNNTGG	1 cut(s)	545
XapI	RAATTY	1 cut(s)	436
XcmI	CCANNNNNNNNNTGG	1 cut(s)	151
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.