Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Forward (+)

64839963 .. 64843182

Gene Structure 3220 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005076

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGATGACAATACACCAGAATTTCGAAGTGGATGTGGTTTTCCTCACGCATACCTAAACACAAGGGTTTTAGAAGTCTCAGACCCAGAAAAAAACAGAGTCTCAGAGAAACCAGCGAGCAAGGTAACTACGATGGCTTTCTTGAGTAAATTTGGGAATATACTTCGGCAGTCTGCAGGCAGGCAGATCAACTCTGACTTGTCTTCCTTCAAACTGTGGACCCATCAGCCTGTAAGATGCATGTCATCCATGGGAAGCTCAAAGCTTTTTATCGGAGGTATTTCGTATCAGACAGATGATGGCAGTCTGAGGGAGGCTTTTGCAAGATATGGAGATGTTGTTGATGCACGGATCATCACAGACCGCGAGAGTGGTAGATCAAGAGGGTTTGGATTTGTTACTTACGCTACACCTGAGGGTGCATCAAGTGCCATTCAGGCCTTGGATGGGAAGGATCTTCATGGCCGTGTAATAAGGGTGAATTATGCAAATGAGAGGCCTCCTCGTAGTAGCTTTGGTTATGGTGGAGGTGATGGCGGTTACGGGGGTGGTGGAGGCAGTTACGGTGGTGGCGGAGGTGGTTACGGTGGTGGTGGAGGCGGCTACAACAGCTATGGCAATGACAGTTATAATAGTGGTGGTAATTACGGAAGTGGAAACTCTTTTGAATCTGCTAGTGGTGGAGGTTATGGCAATAGCACAAATTTTGCTCCTCCTGGTAGTGTTGCTACTGGTAGTGCCGATAACTTTGGAGTTGGTGGTGGTGACAGCAGCTTTCCCACTGGTGGAGGTTTTGGCGATAGCCTAAATTATGGTTCTCCTGGTAGTGTTGGAACTGGTGGTGCTGATAACTTTGGTGTTGGTGGCAGTGATGACAGTAGCTTTCCCAACAGGGACGATGAGTTAGGCTATCAGAGTAGGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

309

Amino Acids

31.54

Weight (kDa)

5.13

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	89 - 159	6.9e-21	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	630
AccII	CGCG	1 cut(s)	366
AciI	CCGC	4 cut(s)	364, 537, 573, 600
AclWI	GGATC	2 cut(s)	359, 462
AcoI	YGGCCR	1 cut(s)	463
AcsI	RAATTY	3 cut(s)	20, 149, 703
AfiI	CCNNNNNNNGG	2 cut(s)	447, 785
AgsI	TTSAA	2 cut(s)	211, 668
AjnI	CCWGG	2 cut(s)	715, 820
AluBI	AGCT	6 cut(s)	258, 265, 513, 612, 774, 882
AluI	AGCT	6 cut(s)	258, 265, 513, 612, 774, 882
Alw26I	GTCTC	2 cut(s)	82, 106
AlwI	GGATC	2 cut(s)	359, 462
AoxI	GGCC	4 cut(s)	438, 463, 497, 921
ApeKI	GCWGC	1 cut(s)	771
ApoI	RAATTY	3 cut(s)	20, 149, 703
AspS9I	GGNCC	2 cut(s)	219, 921
AsuHPI	GGTGA	3 cut(s)	490, 542, 776
AsuII	TTCGAA	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	219
AxyI	CCTNAGG	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	783
BccI	CCATC	5 cut(s)	127, 231, 293, 440, 527
BceAI	ACGGC	1 cut(s)	450
BciT130I	CCWGG	2 cut(s)	717, 822
BcoDI	GTCTC	2 cut(s)	82, 106
BfaI	CTAG	1 cut(s)	675
BfmI	CTRYAG	1 cut(s)	174
BglI	GCCNNNNNGGC	1 cut(s)	437
BisI	GCNGC	2 cut(s)	601, 772
BlsI	GCNGC	2 cut(s)	602, 773
Bme1390I	CCNGG	2 cut(s)	717, 822
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	2 cut(s)	219, 921
BmiI	GGNNCC	1 cut(s)	221
BmrFI	CCNGG	2 cut(s)	717, 822
BmsI	GCATC	3 cut(s)	227, 334, 431
BpiI	GAAGAC	1 cut(s)	195
BplI	GAGNNNNNCTC	2 cut(s)	487, 519
Bpu14I	TTCGAA	1 cut(s)	25
BpuEI	CTTGAG	1 cut(s)	163
BsaJI	CCNNGG	2 cut(s)	249, 441
BsaXI	ACNNNNNCTCC	2 cut(s)	324, 354
Bsc4I	CCNNNNNNNGG	2 cut(s)	447, 785
Bse1I	ACTGG	3 cut(s)	736, 787, 841
Bse21I	CCTNAGG	1 cut(s)	414
Bse3DI	GCAATG	1 cut(s)	625
BseBI	CCWGG	2 cut(s)	717, 822
BseDI	CCNNGG	2 cut(s)	249, 441
BseGI	GGATG	4 cut(s)	10, 38, 245, 451
BseLI	CCNNNNNNNGG	2 cut(s)	447, 785
BseMI	GCAATG	1 cut(s)	625
BseMII	CTCAG	4 cut(s)	93, 117, 299, 405
BseNI	ACTGG	3 cut(s)	736, 787, 841
BseRI	GAGGAG	2 cut(s)	492, 702
BseXI	GCAGC	1 cut(s)	783
Bsh1236I	CGCG	1 cut(s)	366
BshFI	GGCC	4 cut(s)	440, 465, 499, 923
BslFI	GGGAC	1 cut(s)	908
BslI	CCNNNNNNNGG	2 cut(s)	447, 785
BsmAI	GTCTC	2 cut(s)	82, 106
BsmFI	GGGAC	1 cut(s)	908
BsnI	GGCC	4 cut(s)	440, 465, 499, 923
Bsp119I	TTCGAA	1 cut(s)	25
Bsp143I	GATC	4 cut(s)	186, 351, 377, 454
Bsp19I	CCATGG	1 cut(s)	249
BspACI	CCGC	4 cut(s)	364, 537, 573, 600
BspANI	GGCC	4 cut(s)	440, 465, 499, 923
BspCNI	CTCAG	4 cut(s)	92, 116, 300, 406
BspFNI	CGCG	1 cut(s)	366
BspLI	GGNNCC	1 cut(s)	221
BspMAI	CTGCAG	1 cut(s)	178
BspPI	GGATC	2 cut(s)	359, 462
BspT104I	TTCGAA	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	625
BsrI	ACTGG	3 cut(s)	736, 787, 841
BssECI	CCNNGG	2 cut(s)	249, 441
BssMI	GATC	4 cut(s)	186, 351, 377, 454
BssT1I	CCWWGG	2 cut(s)	249, 441
Bst2UI	CCWGG	2 cut(s)	717, 822
Bst4CI	ACNGT	5 cut(s)	216, 566, 587, 626, 878
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstBI	TTCGAA	1 cut(s)	25
BstC8I	GCNNGC	3 cut(s)	118, 178, 182
BstDEI	CTNAG	4 cut(s)	79, 103, 308, 414
BstDSI	CCRYGG	1 cut(s)	249
BstF5I	GGATG	4 cut(s)	10, 38, 245, 451
BstFNI	CGCG	1 cut(s)	366
BstKTI	GATC	4 cut(s)	189, 354, 380, 457
BstMAI	GTCTC	2 cut(s)	82, 106
BstMBI	GATC	4 cut(s)	186, 351, 377, 454
BstMWI	GCNNNNNNNGC	3 cut(s)	428, 437, 609
BstNI	CCWGG	2 cut(s)	717, 822
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	2 cut(s)	715, 820
BstSFI	CTRYAG	1 cut(s)	174
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	1 cut(s)	783
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
Bsu36I	CCTNAGG	1 cut(s)	414
BsuRI	GGCC	4 cut(s)	440, 465, 499, 923
BtgI	CCRYGG	1 cut(s)	249
BtsCI	GGATG	4 cut(s)	10, 38, 245, 451
BtsI	GCAGTG	1 cut(s)	874
BtsIMutI	CAGTG	2 cut(s)	780, 874
Cac8I	GCNNGC	3 cut(s)	118, 178, 182
Cfr13I	GGNCC	2 cut(s)	219, 921
CviAII	CATG	3 cut(s)	241, 250, 461
DdeI	CTNAG	4 cut(s)	79, 103, 308, 414
DpnI	GATC	4 cut(s)	188, 353, 379, 456
DpnII	GATC	4 cut(s)	186, 351, 377, 454
EaeI	YGGCCR	1 cut(s)	463
EciI	GGCGGA	1 cut(s)	588
Eco130I	CCWWGG	2 cut(s)	249, 441
Eco147I	AGGCCT	2 cut(s)	440, 499
Eco47I	GGWCC	1 cut(s)	219
Eco81I	CCTNAGG	1 cut(s)	414
EcoO109I	RGGNCCY	1 cut(s)	921
EcoRII	CCWGG	2 cut(s)	715, 820
EcoT14I	CCWWGG	2 cut(s)	249, 441
EcoT22I	ATGCAT	1 cut(s)	242
ErhI	CCWWGG	2 cut(s)	249, 441
FaeI	CATG	3 cut(s)	244, 253, 464
FaqI	GGGAC	1 cut(s)	908
FatI	CATG	3 cut(s)	240, 249, 460
Fnu4HI	GCNGC	2 cut(s)	601, 772
FokI	GGATG	4 cut(s)	17, 45, 232, 458
Fsp4HI	GCNGC	2 cut(s)	601, 772
FspBI	CTAG	1 cut(s)	675
GluI	GCNGC	2 cut(s)	601, 772
HaeIII	GGCC	4 cut(s)	440, 465, 499, 923
Hin1II	CATG	3 cut(s)	244, 253, 464
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	2 cut(s)	99, 668
HphI	GGTGA	3 cut(s)	490, 542, 776
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	7 cut(s)	82, 106, 196, 275, 291, 309, 915
Hpy188III	TCNNGA	2 cut(s)	142, 381
Hpy8I	GTNNAC	1 cut(s)	219
HpyAV	CCTTC	2 cut(s)	217, 445
HpyCH4III	ACNGT	5 cut(s)	216, 566, 587, 626, 878
HpyCH4V	TGCA	6 cut(s)	176, 240, 323, 347, 422, 488
HpyF10VI	GCNNNNNNNGC	3 cut(s)	428, 437, 609
HpyF3I	CTNAG	4 cut(s)	79, 103, 308, 414
Hsp92II	CATG	3 cut(s)	244, 253, 464
Kzo9I	GATC	4 cut(s)	186, 351, 377, 454
LmnI	GCTCC	1 cut(s)	715
Lsp1109I	GCAGC	1 cut(s)	783
LweI	GCATC	3 cut(s)	227, 334, 431
MaeI	CTAG	1 cut(s)	675
MaeIII	GTNAC	6 cut(s)	124, 397, 539, 560, 581, 764
MalI	GATC	4 cut(s)	188, 353, 379, 456
MboI	GATC	4 cut(s)	186, 351, 377, 454
MboII	GAAGA	2 cut(s)	195, 449
MflI	RGATCY	1 cut(s)	454
MluCI	AATT	6 cut(s)	20, 149, 481, 643, 703, 808
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	811
Mph1103I	ATGCAT	1 cut(s)	242
MslI	CAYNNNNRTG	1 cut(s)	465
MspR9I	CCNGG	2 cut(s)	717, 822
MvaI	CCWGG	2 cut(s)	717, 822
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	3 cut(s)	428, 437, 609
NcoI	CCATGG	1 cut(s)	249
NdeII	GATC	4 cut(s)	186, 351, 377, 454
NlaIII	CATG	3 cut(s)	244, 253, 464
NlaIV	GGNNCC	1 cut(s)	221
NmuCI	GTSAC	1 cut(s)	764
NsiI	ATGCAT	1 cut(s)	242
NspI	RCATGY	1 cut(s)	244
NspV	TTCGAA	1 cut(s)	25
PceI	AGGCCT	2 cut(s)	440, 499
PfeI	GAWTC	1 cut(s)	668
PkrI	GCNGC	2 cut(s)	602, 773
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
PsiI	TTATAA	1 cut(s)	630
Psp6I	CCWGG	2 cut(s)	715, 820
PspGI	CCWGG	2 cut(s)	715, 820
PspN4I	GGNNCC	1 cut(s)	221
PspPI	GGNCC	2 cut(s)	219, 921
PstI	CTGCAG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	454
RseI	CAYNNNNRTG	1 cut(s)	465
SatI	GCNGC	2 cut(s)	601, 772
Sau3AI	GATC	4 cut(s)	186, 351, 377, 454
Sau96I	GGNCC	2 cut(s)	219, 921
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	2 cut(s)	717, 822
SfaNI	GCATC	3 cut(s)	227, 334, 431
SfcI	CTRYAG	1 cut(s)	174
SfuI	TTCGAA	1 cut(s)	25
SinI	GGWCC	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	465
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
Sse9I	AATT	6 cut(s)	20, 149, 481, 643, 703, 808
SseBI	AGGCCT	2 cut(s)	440, 499
SsiI	CCGC	4 cut(s)	364, 537, 573, 600
SspMI	CTAG	1 cut(s)	675
StuI	AGGCCT	2 cut(s)	440, 499
StyD4I	CCNGG	2 cut(s)	715, 820
StyI	CCWWGG	2 cut(s)	249, 441
TaaI	ACNGT	5 cut(s)	216, 566, 587, 626, 878
TaqI	TCGA	1 cut(s)	25
TasI	AATT	6 cut(s)	20, 149, 481, 643, 703, 808
TauI	GCSGC	1 cut(s)	603
TfiI	GAWTC	1 cut(s)	668
TscAI	CASTG	2 cut(s)	787, 874
TseFI	GTSAC	1 cut(s)	764
TseI	GCWGC	1 cut(s)	771
Tsp45I	GTSAC	1 cut(s)	764
TspDTI	ATGAA	1 cut(s)	449
TspGWI	ACGGA	2 cut(s)	364, 663
TspRI	CASTG	2 cut(s)	787, 874
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	3 cut(s)	20, 149, 703
XceI	RCATGY	1 cut(s)	244
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XspI	CTAG	1 cut(s)	675
Zsp2I	ATGCAT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.