Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Forward (+)

7804722 .. 7806969

Gene Structure 2248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g13820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGTTTTTGAGTAAATTCGGCAATATACTTAGGCATACTGCAACCAAGCAGACTGGATCTGCATTGGCTCCTTCCAGGCCGTCCATCTTTCAGGCCATAAGATGCATGACAACTGGGGCAAGTTCTAAGCTGTTTATTGGAGGTATTTCGTTTCAGAGTGATGAACAAAGTTTGAGAGATGAATTTGCCAAATATGGTGAAGTTGTTGATGTAAGAATCATCACAGACCGTGACACTGGTAGATCGAGAGGATTTGGATTCGTCACTTACACTTCCAGCGAGGAGGCATCAAGTGCCATCCAGGCATTGGATGGTAATGAGCTTCATGGCCGCCGTGTAAGGGTGAATTATGCTACTGATAGGCCTCGCAATAACTTTGGAGGAGGTGGTTATGGTGGTGGAGGCGGCAGTTATGGAGGTGGTAGCTACGGTTCTGGAAACGCTGATGGTGGATACGGTGGAAGTGGAGTTGGCTACAACAGCAGTGCCAATTATGCATCTGGAAACACTTTTGACAATGCTGGCACTGGTGGTTTCGGTGCTACTGACAACAGCTTCTCTGCTGGTGGAGCTCAATTTGGAGAGGACAAAAGTGGTTTTGATGAGCCATTAGAAGGAAACAATAGGGATGATGATGACACTGCAGACTTCGAGAAAAGGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

223

Amino Acids

23.1

Weight (kDa)

4.97

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	45 - 115	1.3e-21	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	310
AciI	CCGC	2 cut(s)	334, 408
AclWI	GGATC	1 cut(s)	67
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	2 cut(s)	17, 185
AfiI	CCNNNNNNNGG	3 cut(s)	310, 343, 617
AjnI	CCWGG	2 cut(s)	77, 303
AluBI	AGCT	5 cut(s)	133, 325, 429, 558, 575
AluI	AGCT	5 cut(s)	133, 325, 429, 558, 575
Alw21I	GWGCWC	1 cut(s)	577
AlwI	GGATC	1 cut(s)	67
AoxI	GGCC	5 cut(s)	80, 96, 331, 365, 663
ApoI	RAATTY	2 cut(s)	17, 185
AspS9I	GGNCC	1 cut(s)	663
AsuHPI	GGTGA	2 cut(s)	212, 358
BanII	GRGCYC	1 cut(s)	577
Bbv12I	GWGCWC	1 cut(s)	577
BccI	CCATC	4 cut(s)	95, 308, 308, 443
BceAI	ACGGC	2 cut(s)	67, 321
BciT130I	CCWGG	2 cut(s)	79, 305
BciVI	GTATCC	1 cut(s)	449
BfmI	CTRYAG	1 cut(s)	645
BfuI	GTATCC	1 cut(s)	449
BglI	GCCNNNNNGGC	1 cut(s)	305
BisI	GCNGC	2 cut(s)	334, 409
BlsI	GCNGC	2 cut(s)	335, 410
Bme1390I	CCNGG	2 cut(s)	79, 305
BmgT120I	GGNCC	1 cut(s)	663
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	2 cut(s)	79, 305
BmrI	ACTGGG	1 cut(s)	126
BmsI	GCATC	3 cut(s)	95, 299, 509
BmuI	ACTGGG	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	3 cut(s)	310, 343, 617
Bse1I	ACTGG	4 cut(s)	61, 121, 244, 535
BseBI	CCWGG	2 cut(s)	79, 305
BseGI	GGATG	3 cut(s)	300, 319, 637
BseLI	CCNNNNNNNGG	3 cut(s)	310, 343, 617
BseNI	ACTGG	4 cut(s)	61, 121, 244, 535
BseRI	GAGGAG	2 cut(s)	299, 399
BshFI	GGCC	5 cut(s)	82, 98, 333, 367, 665
BsiHKAI	GWGCWC	1 cut(s)	577
BslI	CCNNNNNNNGG	3 cut(s)	310, 343, 617
BsnI	GGCC	5 cut(s)	82, 98, 333, 367, 665
Bsp1286I	GDGCHC	1 cut(s)	577
Bsp143I	GATC	2 cut(s)	59, 245
BspACI	CCGC	2 cut(s)	334, 408
BspANI	GGCC	5 cut(s)	82, 98, 333, 367, 665
BspLI	GGNNCC	1 cut(s)	72
BspMAI	CTGCAG	1 cut(s)	649
BspPI	GGATC	1 cut(s)	67
BsrI	ACTGG	4 cut(s)	61, 121, 244, 535
BssMI	GATC	2 cut(s)	59, 245
Bst2UI	CCWGG	2 cut(s)	79, 305
Bst4CI	ACNGT	3 cut(s)	233, 434, 461
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	526
BstDEI	CTNAG	2 cut(s)	32, 129
BstF5I	GGATG	3 cut(s)	300, 319, 637
BstKTI	GATC	2 cut(s)	62, 248
BstMBI	GATC	2 cut(s)	59, 245
BstMWI	GCNNNNNNNGC	5 cut(s)	296, 305, 483, 497, 572
BstNI	CCWGG	2 cut(s)	79, 305
BstSCI	CCNGG	2 cut(s)	77, 303
BstSFI	CTRYAG	1 cut(s)	645
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BsuI	GTATCC	1 cut(s)	449
BsuRI	GGCC	5 cut(s)	82, 98, 333, 367, 665
BtsCI	GGATG	3 cut(s)	300, 319, 637
BtsI	GCAGTG	2 cut(s)	493, 642
BtsIMutI	CAGTG	4 cut(s)	237, 493, 528, 642
Cac8I	GCNNGC	1 cut(s)	526
Cfr13I	GGNCC	1 cut(s)	663
CviAII	CATG	2 cut(s)	109, 329
DdeI	CTNAG	2 cut(s)	32, 129
DpnI	GATC	2 cut(s)	61, 247
DpnII	GATC	2 cut(s)	59, 245
EaeI	YGGCCR	1 cut(s)	331
Ecl136II	GAGCTC	1 cut(s)	575
Eco147I	AGGCCT	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	577
Eco53kI	GAGCTC	1 cut(s)	575
EcoICRI	GAGCTC	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	663
EcoRII	CCWGG	2 cut(s)	77, 303
EcoT22I	ATGCAT	2 cut(s)	110, 502
EcoT38I	GRGCYC	1 cut(s)	577
FaeI	CATG	2 cut(s)	112, 332
FatI	CATG	2 cut(s)	108, 328
Fnu4HI	GCNGC	2 cut(s)	334, 409
FokI	GGATG	3 cut(s)	287, 326, 644
FriOI	GRGCYC	1 cut(s)	577
Fsp4HI	GCNGC	2 cut(s)	334, 409
GluI	GCNGC	2 cut(s)	334, 409
HaeIII	GGCC	5 cut(s)	82, 98, 333, 367, 665
Hin1II	CATG	2 cut(s)	112, 332
HinfI	GANTC	2 cut(s)	219, 261
HphI	GGTGA	2 cut(s)	212, 358
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	4 cut(s)	249, 438, 504, 655
HpyAV	CCTTC	2 cut(s)	84, 611
HpyCH4III	ACNGT	3 cut(s)	233, 434, 461
HpyCH4V	TGCA	5 cut(s)	44, 65, 108, 500, 647
HpyF10VI	GCNNNNNNNGC	5 cut(s)	296, 305, 483, 497, 572
HpyF3I	CTNAG	2 cut(s)	32, 129
Hsp92II	CATG	2 cut(s)	112, 332
Kzo9I	GATC	2 cut(s)	59, 245
LmnI	GCTCC	2 cut(s)	76, 572
LweI	GCATC	3 cut(s)	95, 299, 509
MaeIII	GTNAC	2 cut(s)	233, 265
MalI	GATC	2 cut(s)	61, 247
MboI	GATC	2 cut(s)	59, 245
MflI	RGATCY	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	577
MluCI	AATT	5 cut(s)	17, 185, 349, 493, 578
Mph1103I	ATGCAT	2 cut(s)	110, 502
MspR9I	CCNGG	2 cut(s)	79, 305
MvaI	CCWGG	2 cut(s)	79, 305
MwoI	GCNNNNNNNGC	5 cut(s)	296, 305, 483, 497, 572
NdeII	GATC	2 cut(s)	59, 245
NlaIII	CATG	2 cut(s)	112, 332
NlaIV	GGNNCC	1 cut(s)	72
NmuCI	GTSAC	2 cut(s)	233, 265
NsiI	ATGCAT	2 cut(s)	110, 502
PceI	AGGCCT	1 cut(s)	367
PfeI	GAWTC	2 cut(s)	219, 261
PflMI	CCANNNNNTGG	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	335, 410
Psp124BI	GAGCTC	1 cut(s)	577
Psp6I	CCWGG	2 cut(s)	77, 303
PspGI	CCWGG	2 cut(s)	77, 303
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	663
PsrI	GAACNNNNNNTAC	2 cut(s)	418, 450
PstI	CTGCAG	1 cut(s)	649
PsuI	RGATCY	1 cut(s)	59
SacI	GAGCTC	1 cut(s)	577
SatI	GCNGC	2 cut(s)	334, 409
Sau3AI	GATC	2 cut(s)	59, 245
Sau96I	GGNCC	1 cut(s)	663
ScrFI	CCNGG	2 cut(s)	79, 305
SduI	GDGCHC	1 cut(s)	577
SetI	ASST	8 cut(s)	135, 148, 327, 391, 424, 431, 560, 577
SfaNI	GCATC	3 cut(s)	95, 299, 509
SfcI	CTRYAG	1 cut(s)	645
Sse9I	AATT	5 cut(s)	17, 185, 349, 493, 578
SseBI	AGGCCT	1 cut(s)	367
SsiI	CCGC	2 cut(s)	334, 408
SstI	GAGCTC	1 cut(s)	577
StuI	AGGCCT	1 cut(s)	367
StyD4I	CCNGG	2 cut(s)	77, 303
TaaI	ACNGT	3 cut(s)	233, 434, 461
TaqI	TCGA	2 cut(s)	248, 654
TasI	AATT	5 cut(s)	17, 185, 349, 493, 578
TauI	GCSGC	2 cut(s)	336, 411
TfiI	GAWTC	2 cut(s)	219, 261
TscAI	CASTG	4 cut(s)	244, 493, 535, 649
TseFI	GTSAC	2 cut(s)	233, 265
Tsp45I	GTSAC	2 cut(s)	233, 265
TspDTI	ATGAA	3 cut(s)	180, 198, 317
TspRI	CASTG	4 cut(s)	244, 493, 535, 649
Van91I	CCANNNNNTGG	1 cut(s)	310
XapI	RAATTY	2 cut(s)	17, 185
XcmI	CCANNNNNNNNNTGG	2 cut(s)	307, 311
Zsp2I	ATGCAT	2 cut(s)	110, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.