Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Reverse (-)

16430847 .. 16433395

Gene Structure 2549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G205300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCTTTCTTAAGTAAAATTGGGAATATACTCAGACAGACTGCAAACAAGCAGATCAGATCTGAATTATCTCCTTTCAAACTGTCCATCCATCAAGCAGTAAGATGCATGTCAAGCATGGCGAGTTCAAAACTCTTTATTGGAGGTATTTCGTACCAGACAGATGAGCAGAGTCTGAGGGAAGCTTTTGCAAAATATGGTGAAGTTATTGATGCAAGAATCATCAGTGACCGTGAAACTGGTAGATCTAGAGGATTTGGGTTCATCACTTTCACCAGTAGCGAGGAGGCATCCAGTGCCATCCAGGCCTTGGATGGGCAGGAGCTTCATGGCCGCCGAGTAAGGGTGAATTATGCTACTGATAGGCCTCGCCCTAACTTCGGTGATGGCGGCTACAACGGAGGTGGTGGAGGTTATGGCGGTGGTGGTGGTTACGGTGGCGGTGGCGGTGGTTATGGCGGTGGCGGTAGTTATGGCGGTGGTGGTTATGGTGGTGGGAACACTGGTGGTGGATATGGTGGAAGTGGAGGTGGCTACAGCAGTGGTGGTAATTACCCAAGTGGAAACACTTTTGAAACTGCTAGCACTGGAGGTGCTTTTGGCAATAGCAGCAATTTTGGTGTTGCTGGCGGTGTTGGTGGTGCTGATGACTTTGTTGGCGGTGCTGACAACAACTTTGGCAGTGGTGGAGCTCAATTGGGAGAGAACAAAGGTGGTTTCAGCTTGGATGATCCATTGGAAGGAAATGATAGGGATGACGATAACGACGGCAACTTTCTCAAGAGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

264

Amino Acids

26.52

Weight (kDa)

5.11

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	310
AclWI	GGATC	1 cut(s)	725
AcoI	YGGCCR	1 cut(s)	331
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	5 cut(s)	310, 315, 343, 380, 740
AflII	CTTAAG	1 cut(s)	10
AgsI	TTSAA	3 cut(s)	79, 129, 575
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	4 cut(s)	185, 325, 692, 723
AluI	AGCT	4 cut(s)	185, 325, 692, 723
Alw21I	GWGCWC	1 cut(s)	694
AlwI	GGATC	1 cut(s)	725
AlwNI	CAGNNNCTG	1 cut(s)	175
AoxI	GGCC	3 cut(s)	306, 331, 365
ApeKI	GCWGC	1 cut(s)	609
ArsI	GACNNNNNNTTYG	2 cut(s)	659, 691
AsuHPI	GGTGA	4 cut(s)	212, 265, 358, 395
AsuNHI	GCTAGC	1 cut(s)	581
BanII	GRGCYC	1 cut(s)	694
Bbv12I	GWGCWC	1 cut(s)	694
BbvI	GCAGC	1 cut(s)	621
BccI	CCATC	5 cut(s)	95, 99, 308, 308, 380
BceAI	ACGGC	1 cut(s)	784
BciT130I	CCWGG	1 cut(s)	305
BfaI	CTAG	2 cut(s)	249, 582
BfmI	CTRYAG	1 cut(s)	535
BfrI	CTTAAG	1 cut(s)	10
BglI	GCCNNNNNGGC	1 cut(s)	305
BglII	AGATCT	2 cut(s)	59, 245
BisI	GCNGC	3 cut(s)	334, 391, 610
BlsI	GCNGC	3 cut(s)	335, 392, 611
Bme1390I	CCNGG	1 cut(s)	305
BmrFI	CCNGG	1 cut(s)	305
BmsI	GCATC	3 cut(s)	95, 202, 299
BmtI	GCTAGC	1 cut(s)	585
BpmI	CTGGAG	1 cut(s)	609
BpuEI	CTTGAG	1 cut(s)	764
BsaJI	CCNNGG	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	5 cut(s)	310, 315, 343, 380, 740
Bse1I	ACTGG	5 cut(s)	244, 276, 294, 508, 592
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	6 cut(s)	87, 290, 300, 319, 733, 760
BseLI	CCNNNNNNNGG	5 cut(s)	310, 315, 343, 380, 740
BseMII	CTCAG	2 cut(s)	46, 167
BseNI	ACTGG	5 cut(s)	244, 276, 294, 508, 592
BseRI	GAGGAG	1 cut(s)	299
BseXI	GCAGC	1 cut(s)	621
BshFI	GGCC	3 cut(s)	308, 333, 367
BsiHKAI	GWGCWC	1 cut(s)	694
BslI	CCNNNNNNNGG	5 cut(s)	310, 315, 343, 380, 740
BsnI	GGCC	3 cut(s)	308, 333, 367
Bsp1286I	GDGCHC	1 cut(s)	694
Bsp143I	GATC	4 cut(s)	54, 59, 245, 730
BspANI	GGCC	3 cut(s)	308, 333, 367
BspCNI	CTCAG	2 cut(s)	45, 168
BspOI	GCTAGC	1 cut(s)	585
BspPI	GGATC	1 cut(s)	725
BspTI	CTTAAG	1 cut(s)	10
BsrI	ACTGG	5 cut(s)	244, 276, 294, 508, 592
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	4 cut(s)	54, 59, 245, 730
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	3 cut(s)	84, 233, 437
BstAFI	CTTAAG	1 cut(s)	10
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	583, 628
BstDEI	CTNAG	2 cut(s)	32, 176
BstF5I	GGATG	6 cut(s)	87, 290, 300, 319, 733, 760
BstKTI	GATC	4 cut(s)	57, 62, 248, 733
BstMBI	GATC	4 cut(s)	54, 59, 245, 730
BstMWI	GCNNNNNNNGC	4 cut(s)	114, 296, 305, 609
BstNI	CCWGG	1 cut(s)	305
BstNSI	RCATGY	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	535
BstV1I	GCAGC	1 cut(s)	621
BstX2I	RGATCY	2 cut(s)	59, 245
BstYI	RGATCY	2 cut(s)	59, 245
BsuRI	GGCC	3 cut(s)	308, 333, 367
BtsCI	GGATG	6 cut(s)	87, 290, 300, 319, 733, 760
BtsI	GCAGTG	2 cut(s)	547, 688
BtsIMutI	CAGTG	6 cut(s)	232, 301, 501, 547, 585, 688
Cac8I	GCNNGC	2 cut(s)	583, 628
CaiI	CAGNNNCTG	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	154
CspCI	CAANNNNNGTGG	2 cut(s)	385, 420
CviAII	CATG	3 cut(s)	109, 118, 329
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	2 cut(s)	32, 176
DpnI	GATC	4 cut(s)	56, 61, 247, 732
DpnII	GATC	4 cut(s)	54, 59, 245, 730
EaeI	YGGCCR	1 cut(s)	331
Ecl136II	GAGCTC	1 cut(s)	692
Eco130I	CCWWGG	1 cut(s)	309
Eco147I	AGGCCT	2 cut(s)	308, 367
Eco24I	GRGCYC	1 cut(s)	694
Eco53kI	GAGCTC	1 cut(s)	692
EcoICRI	GAGCTC	1 cut(s)	692
EcoRII	CCWGG	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	309
EcoT22I	ATGCAT	1 cut(s)	110
EcoT38I	GRGCYC	1 cut(s)	694
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	3 cut(s)	112, 121, 332
FatI	CATG	3 cut(s)	108, 117, 328
Fnu4HI	GCNGC	3 cut(s)	334, 391, 610
FokI	GGATG	6 cut(s)	74, 277, 287, 326, 740, 767
FriOI	GRGCYC	1 cut(s)	694
Fsp4HI	GCNGC	3 cut(s)	334, 391, 610
FspBI	CTAG	2 cut(s)	249, 582
GluI	GCNGC	3 cut(s)	334, 391, 610
GsuI	CTGGAG	1 cut(s)	609
HaeIII	GGCC	3 cut(s)	308, 333, 367
Hin1II	CATG	3 cut(s)	112, 121, 332
HindIII	AAGCTT	1 cut(s)	183
HinfI	GANTC	2 cut(s)	172, 219
HphI	GGTGA	4 cut(s)	212, 265, 358, 395
Hpy188I	TCNGA	4 cut(s)	35, 59, 64, 177
Hpy188III	TCNNGA	2 cut(s)	249, 781
Hpy99I	CGWCG	1 cut(s)	770
HpyAV	CCTTC	1 cut(s)	734
HpyCH4III	ACNGT	3 cut(s)	84, 233, 437
HpyCH4V	TGCA	4 cut(s)	44, 108, 191, 215
HpyF10VI	GCNNNNNNNGC	4 cut(s)	114, 296, 305, 609
HpyF3I	CTNAG	2 cut(s)	32, 176
Hsp92II	CATG	3 cut(s)	112, 121, 332
Kzo9I	GATC	4 cut(s)	54, 59, 245, 730
LmnI	GCTCC	2 cut(s)	322, 689
Lsp1109I	GCAGC	1 cut(s)	621
LweI	GCATC	3 cut(s)	95, 202, 299
MaeI	CTAG	2 cut(s)	249, 582
MaeIII	GTNAC	2 cut(s)	227, 431
MalI	GATC	4 cut(s)	56, 61, 247, 732
MboI	GATC	4 cut(s)	54, 59, 245, 730
MfeI	CAATTG	1 cut(s)	695
MflI	RGATCY	2 cut(s)	59, 245
MhlI	GDGCHC	1 cut(s)	694
MluCI	AATT	6 cut(s)	18, 65, 349, 550, 613, 695
MlyI	GAGTC	1 cut(s)	181
Mph1103I	ATGCAT	1 cut(s)	110
MseI	TTAA	1 cut(s)	11
MspCI	CTTAAG	1 cut(s)	10
MspR9I	CCNGG	1 cut(s)	305
MunI	CAATTG	1 cut(s)	695
MvaI	CCWGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	4 cut(s)	114, 296, 305, 609
NdeII	GATC	4 cut(s)	54, 59, 245, 730
NheI	GCTAGC	1 cut(s)	581
NlaIII	CATG	3 cut(s)	112, 121, 332
NmeAIII	GCCGAG	1 cut(s)	362
NmuCI	GTSAC	1 cut(s)	227
NsiI	ATGCAT	1 cut(s)	110
NspI	RCATGY	1 cut(s)	112
PceI	AGGCCT	2 cut(s)	308, 367
PfeI	GAWTC	1 cut(s)	219
PflMI	CCANNNNNTGG	1 cut(s)	310
PkrI	GCNGC	3 cut(s)	335, 392, 611
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	694
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PstNI	CAGNNNCTG	1 cut(s)	175
PsuI	RGATCY	2 cut(s)	59, 245
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SacI	GAGCTC	1 cut(s)	694
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	3 cut(s)	334, 391, 610
Sau3AI	GATC	4 cut(s)	54, 59, 245, 730
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	694
SfaNI	GCATC	3 cut(s)	95, 202, 299
SfcI	CTRYAG	1 cut(s)	535
SmlI	CTYRAG	2 cut(s)	10, 779
SmoI	CTYRAG	2 cut(s)	10, 779
Sse9I	AATT	6 cut(s)	18, 65, 349, 550, 613, 695
SseBI	AGGCCT	2 cut(s)	308, 367
SspMI	CTAG	2 cut(s)	249, 582
SstI	GAGCTC	1 cut(s)	694
StuI	AGGCCT	2 cut(s)	308, 367
StyD4I	CCNGG	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	3 cut(s)	84, 233, 437
TasI	AATT	6 cut(s)	18, 65, 349, 550, 613, 695
TauI	GCSGC	2 cut(s)	336, 393
TfiI	GAWTC	1 cut(s)	219
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	6 cut(s)	232, 301, 508, 547, 592, 688
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	1 cut(s)	609
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	2 cut(s)	253, 317
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	6 cut(s)	232, 301, 508, 547, 592, 688
Van91I	CCANNNNNTGG	1 cut(s)	310
Vha464I	CTTAAG	1 cut(s)	10
XbaI	TCTAGA	1 cut(s)	248
XceI	RCATGY	1 cut(s)	112
XcmI	CCANNNNNNNNNTGG	2 cut(s)	307, 311
XspI	CTAG	2 cut(s)	249, 582
Zsp2I	ATGCAT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.