Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Forward (+)

63274384 .. 63276769

Gene Structure 2386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00270750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCGTTCTTGAGTAAATTTGGCAATATACTTAGGCAGACCGCAACCAGGCAGATCAGATCTGAATTGGCTCCTTCCAAGCCGTCGATTTTTCAGGCCATAAGATGCATGTCAACTGGGCCAAGTTCTAAACTATTTATTGGAGGTGTGTCATTTCAGAGTGATGAGCAAAGTCTGAGGGAAGAATTTGCCAAATATGGTGAAGTTGTTGATGTAAGAATCATCACAGACCGTGACACCGGTAGATCGAGAGGCTTTGGATTCGTTACTTACACATCTAGCGAGGAGGCATCAAGTGCCATCCAGGCCTTGGATGGTCAGGAGCTTCATGGCCGCCGCGTCAGGGTGAATTATGCTACTGACAGGCCTCGGACTAACTTTGGAGGAGGTGGTTATGGTGGTGATGGTGGTTACTCGAGAGGTGGTGGAGGATATAGTGGTGGTGGTGGGGGCGGTTATGGAGGTGGCGGTTATGGAGGTGGCGGTTATGGAGGTGGCAGCTACGGTTCAGGGAACTCTGGTGGTGGATACGGTGGAAGTGGAGTTGGCTACAGCAGCGGTGGGACTTTTGATAATGCTAGCACTGGTGGTTTTGGTGGTACTGACAACAGCTTTTCCGCTGGTGGAGCTCAATTTGGAGAGGACAAAAGTGGCTTCGATGAGCCATTAGAAGGAAACAATAGGGATGATGACGACACTGCAGACTTCGAAAAAAGGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

240

Amino Acids

24.55

Weight (kDa)

5.02

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	45 - 115	7.5e-22	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	310
AccII	CGCG	1 cut(s)	339
AciI	CCGC	8 cut(s)	42, 334, 337, 453, 468, 483, 558, 618
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	2 cut(s)	17, 185
AfaI	GTAC	1 cut(s)	601
AfiI	CCNNNNNNNGG	4 cut(s)	48, 310, 343, 671
AgeI	ACCGGT	1 cut(s)	239
AjnI	CCWGG	2 cut(s)	47, 303
AluBI	AGCT	4 cut(s)	325, 501, 612, 629
AluI	AGCT	4 cut(s)	325, 501, 612, 629
Alw21I	GWGCWC	1 cut(s)	631
Ama87I	CYCGRG	1 cut(s)	415
AoxI	GGCC	6 cut(s)	96, 119, 306, 331, 365, 717
ApeKI	GCWGC	2 cut(s)	498, 555
ApoI	RAATTY	2 cut(s)	17, 185
AsiGI	ACCGGT	1 cut(s)	239
AspS9I	GGNCC	2 cut(s)	119, 717
AsuHPI	GGTGA	3 cut(s)	212, 358, 413
AsuII	TTCGAA	1 cut(s)	708
AsuNHI	GCTAGC	1 cut(s)	578
AvaI	CYCGRG	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	631
Bbv12I	GWGCWC	1 cut(s)	631
BbvI	GCAGC	2 cut(s)	510, 567
BccI	CCATC	3 cut(s)	308, 308, 398
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	2 cut(s)	49, 305
BciVI	GTATCC	1 cut(s)	521
BfaI	CTAG	2 cut(s)	279, 579
BfmI	CTRYAG	2 cut(s)	550, 699
BfuI	GTATCC	1 cut(s)	521
BglI	GCCNNNNNGGC	1 cut(s)	305
BglII	AGATCT	1 cut(s)	59
BisI	GCNGC	4 cut(s)	334, 337, 499, 556
BlsI	GCNGC	4 cut(s)	335, 338, 500, 557
Bme1390I	CCNGG	2 cut(s)	49, 305
BmeT110I	CYCGRG	1 cut(s)	415
BmgT120I	GGNCC	2 cut(s)	119, 717
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	2 cut(s)	49, 305
BmrI	ACTGGG	1 cut(s)	126
BmsI	GCATC	2 cut(s)	95, 299
BmtI	GCTAGC	1 cut(s)	582
BmuI	ACTGGG	1 cut(s)	126
Bpu14I	TTCGAA	1 cut(s)	708
BpuEI	CTTGAG	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	309, 368
BsaWI	WCCGGW	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 310, 343, 671
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	2 cut(s)	121, 589
BseBI	CCWGG	2 cut(s)	49, 305
BseDI	CCNNGG	2 cut(s)	309, 368
BseGI	GGATG	3 cut(s)	300, 319, 691
BseLI	CCNNNNNNNGG	4 cut(s)	48, 310, 343, 671
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	2 cut(s)	121, 589
BseRI	GAGGAG	2 cut(s)	299, 399
BseXI	GCAGC	2 cut(s)	510, 567
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	6 cut(s)	98, 121, 308, 333, 367, 719
BshTI	ACCGGT	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	631
BsiHKCI	CYCGRG	1 cut(s)	415
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	577
BslI	CCNNNNNNNGG	4 cut(s)	48, 310, 343, 671
BsmFI	GGGAC	1 cut(s)	577
BsnI	GGCC	6 cut(s)	98, 121, 308, 333, 367, 719
BsoBI	CYCGRG	1 cut(s)	415
Bsp119I	TTCGAA	1 cut(s)	708
Bsp1286I	GDGCHC	1 cut(s)	631
Bsp143I	GATC	3 cut(s)	54, 59, 245
BspACI	CCGC	8 cut(s)	42, 334, 337, 453, 468, 483, 558, 618
BspANI	GGCC	6 cut(s)	98, 121, 308, 333, 367, 719
BspCNI	CTCAG	1 cut(s)	168
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	1 cut(s)	72
BspMAI	CTGCAG	1 cut(s)	703
BspOI	GCTAGC	1 cut(s)	582
BspT104I	TTCGAA	1 cut(s)	708
BsrFI	RCCGGY	1 cut(s)	239
BsrI	ACTGG	2 cut(s)	121, 589
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	2 cut(s)	309, 368
BssMI	GATC	3 cut(s)	54, 59, 245
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	2 cut(s)	49, 305
Bst4CI	ACNGT	3 cut(s)	233, 506, 533
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstBI	TTCGAA	1 cut(s)	708
BstC8I	GCNNGC	1 cut(s)	580
BstDEI	CTNAG	2 cut(s)	32, 176
BstF5I	GGATG	3 cut(s)	300, 319, 691
BstFNI	CGCG	1 cut(s)	339
BstKTI	GATC	3 cut(s)	57, 62, 248
BstMBI	GATC	3 cut(s)	54, 59, 245
BstMWI	GCNNNNNNNGC	4 cut(s)	296, 305, 555, 626
BstNI	CCWGG	2 cut(s)	49, 305
BstNSI	RCATGY	1 cut(s)	112
BstSCI	CCNGG	2 cut(s)	47, 303
BstSFI	CTRYAG	2 cut(s)	550, 699
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	510, 567
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BsuI	GTATCC	1 cut(s)	521
BsuRI	GGCC	6 cut(s)	98, 121, 308, 333, 367, 719
BtsCI	GGATG	3 cut(s)	300, 319, 691
BtsI	GCAGTG	1 cut(s)	696
BtsIMutI	CAGTG	2 cut(s)	582, 696
Cac8I	GCNNGC	1 cut(s)	580
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	2 cut(s)	119, 717
CseI	GACGC	1 cut(s)	328
Csp6I	GTAC	1 cut(s)	600
CspAI	ACCGGT	1 cut(s)	239
CviAII	CATG	2 cut(s)	109, 329
CviQI	GTAC	1 cut(s)	600
DdeI	CTNAG	2 cut(s)	32, 176
DpnI	GATC	3 cut(s)	56, 61, 247
DpnII	GATC	3 cut(s)	54, 59, 245
EaeI	YGGCCR	1 cut(s)	331
Ecl136II	GAGCTC	1 cut(s)	629
Eco130I	CCWWGG	1 cut(s)	309
Eco147I	AGGCCT	2 cut(s)	308, 367
Eco24I	GRGCYC	1 cut(s)	631
Eco53kI	GAGCTC	1 cut(s)	629
Eco88I	CYCGRG	1 cut(s)	415
EcoICRI	GAGCTC	1 cut(s)	629
EcoO109I	RGGNCCY	1 cut(s)	717
EcoRII	CCWGG	2 cut(s)	47, 303
EcoT14I	CCWWGG	1 cut(s)	309
EcoT22I	ATGCAT	1 cut(s)	110
EcoT38I	GRGCYC	1 cut(s)	631
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	2 cut(s)	112, 332
FaqI	GGGAC	1 cut(s)	577
FatI	CATG	2 cut(s)	108, 328
Fnu4HI	GCNGC	4 cut(s)	334, 337, 499, 556
FokI	GGATG	3 cut(s)	287, 326, 698
FriOI	GRGCYC	1 cut(s)	631
Fsp4HI	GCNGC	4 cut(s)	334, 337, 499, 556
FspBI	CTAG	2 cut(s)	279, 579
GluI	GCNGC	4 cut(s)	334, 337, 499, 556
HaeIII	GGCC	6 cut(s)	98, 121, 308, 333, 367, 719
HapII	CCGG	1 cut(s)	240
HgaI	GACGC	1 cut(s)	328
Hin1II	CATG	2 cut(s)	112, 332
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	2 cut(s)	219, 261
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	3 cut(s)	212, 358, 413
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	5 cut(s)	59, 64, 159, 177, 372
Hpy188III	TCNNGA	4 cut(s)	10, 249, 320, 417
Hpy8I	GTNNAC	1 cut(s)	114
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	2 cut(s)	84, 665
HpyCH4III	ACNGT	3 cut(s)	233, 506, 533
HpyCH4V	TGCA	2 cut(s)	108, 701
HpyF10VI	GCNNNNNNNGC	4 cut(s)	296, 305, 555, 626
HpyF3I	CTNAG	2 cut(s)	32, 176
Hsp92II	CATG	2 cut(s)	112, 332
Kzo9I	GATC	3 cut(s)	54, 59, 245
LmnI	GCTCC	3 cut(s)	76, 322, 626
Lsp1109I	GCAGC	2 cut(s)	510, 567
LweI	GCATC	2 cut(s)	95, 299
MaeI	CTAG	2 cut(s)	279, 579
MaeIII	GTNAC	3 cut(s)	233, 265, 410
MalI	GATC	3 cut(s)	56, 61, 247
MboI	GATC	3 cut(s)	54, 59, 245
MboII	GAAGA	1 cut(s)	194
MflI	RGATCY	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	631
MluCI	AATT	5 cut(s)	17, 65, 185, 349, 632
Mph1103I	ATGCAT	1 cut(s)	110
MspA1I	CMGCKG	2 cut(s)	558, 620
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	2 cut(s)	49, 305
MvaI	CCWGG	2 cut(s)	49, 305
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	4 cut(s)	296, 305, 555, 626
NdeII	GATC	3 cut(s)	54, 59, 245
NheI	GCTAGC	1 cut(s)	578
NlaIII	CATG	2 cut(s)	112, 332
NlaIV	GGNNCC	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	233
NsiI	ATGCAT	1 cut(s)	110
NspI	RCATGY	1 cut(s)	112
NspV	TTCGAA	1 cut(s)	708
PaeR7I	CTCGAG	1 cut(s)	415
PceI	AGGCCT	2 cut(s)	308, 367
PfeI	GAWTC	2 cut(s)	219, 261
PflMI	CCANNNNNTGG	1 cut(s)	310
PinAI	ACCGGT	1 cut(s)	239
PkrI	GCNGC	4 cut(s)	335, 338, 500, 557
Psp124BI	GAGCTC	1 cut(s)	631
Psp6I	CCWGG	2 cut(s)	47, 303
PspGI	CCWGG	2 cut(s)	47, 303
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	2 cut(s)	119, 717
PstI	CTGCAG	1 cut(s)	703
PsuI	RGATCY	1 cut(s)	59
RsaI	GTAC	1 cut(s)	601
RsaNI	GTAC	1 cut(s)	600
SacI	GAGCTC	1 cut(s)	631
SatI	GCNGC	4 cut(s)	334, 337, 499, 556
Sau3AI	GATC	3 cut(s)	54, 59, 245
Sau96I	GGNCC	2 cut(s)	119, 717
ScrFI	CCNGG	2 cut(s)	49, 305
SduI	GDGCHC	1 cut(s)	631
SfaNI	GCATC	2 cut(s)	95, 299
SfcI	CTRYAG	2 cut(s)	550, 699
Sfr274I	CTCGAG	1 cut(s)	415
SfuI	TTCGAA	1 cut(s)	708
SlaI	CTCGAG	1 cut(s)	415
SmlI	CTYRAG	2 cut(s)	10, 415
SmoI	CTYRAG	2 cut(s)	10, 415
Sse9I	AATT	5 cut(s)	17, 65, 185, 349, 632
SseBI	AGGCCT	2 cut(s)	308, 367
SsiI	CCGC	8 cut(s)	42, 334, 337, 453, 468, 483, 558, 618
SspMI	CTAG	2 cut(s)	279, 579
SstI	GAGCTC	1 cut(s)	631
StuI	AGGCCT	2 cut(s)	308, 367
StyD4I	CCNGG	2 cut(s)	47, 303
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	3 cut(s)	233, 506, 533
TaqI	TCGA	5 cut(s)	86, 248, 416, 657, 708
TasI	AATT	5 cut(s)	17, 65, 185, 349, 632
TauI	GCSGC	2 cut(s)	336, 339
TfiI	GAWTC	2 cut(s)	219, 261
TscAI	CASTG	2 cut(s)	589, 703
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	2 cut(s)	498, 555
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	317
TspRI	CASTG	2 cut(s)	589, 703
Van91I	CCANNNNNTGG	1 cut(s)	310
XapI	RAATTY	2 cut(s)	17, 185
XceI	RCATGY	1 cut(s)	112
XcmI	CCANNNNNNNNNTGG	2 cut(s)	307, 311
XhoI	CTCGAG	1 cut(s)	415
XspI	CTAG	2 cut(s)	279, 579
Zsp2I	ATGCAT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.