Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Reverse (-)

3850162 .. 3853316

Gene Structure 3155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G004600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTGGTTTTCCTCACGCATACCTAAATACAAGAAGTCTCAGACCCGGAAAAAAAAAAAAAACAGAGTCTCAGAGAAGCCAGCGAGCAAGGTAACTGCGATGGCTTTCTTGAGTAAATTTGGGAATATACTTCGGCAGTCTGCAGGCAAGCAGATCAACTCTGACTTGTCTTCTTTCAAACTGTGGACCCATCAGGCTGTAAGATGCATGTCATCCATGGGAGGCTCAAAGCTTTTTATCGGAGGTATTTCGTATCAGACGGATGATGGCAGTCTGAGGGAGGCTTTTGCAAGATATGGAGATGTTGTTGATGCACGGATCATCACAGACCGTGAGAGTGGTAGATCAAGAGGATTTGGATTTGTTACTTACGCTACACCTGAGGGTGCATCAAGTGCCATTCAGGCCTTGGATGGAAAGGATCTTCATGGCCGTGTAATAAGGGTGAATTATGCCAATGAGAGGCCTCCTCGTAGTAGCTTTGGTTATGGAGGAGGTGATGGTGGTTACGGGGGTGGCGGAGGTGGTTACAGTGGTGGTGGAGGCGGTTACGGTGGCAGAGGCGGAGGTGGCTACAACAGCTATGGCAATGACAGTTATAATAGTGGTGGTAATTATGGAAGTGGAAACTCTTTTGAAACTGCTAGTGGTGGAGGTTATGGCAATAGCACAAATTTTACTCCTTCTGGTAGTGTTGCTACTGGTAGTGCCGATAACTTTGGAGTTGGTGGTGGTGACAGCAGCTTTCCCACCGGTGGAGGTTTTGGCGATAGCCCAAATTATGGTTCTCCTGGTAGTGTTGGAACTGGTGGTGCTGATAACTTTGGTGTTGGTGGCAGTGATGACAGTAGCTTTCCCAACAGGGACGATGAGTTAGGCTATCAGAGTAGGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

298

Amino Acids

30.63

Weight (kDa)

9.33

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	78 - 148	6.5e-21	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
AccB7I	CCANNNNNTGG	1 cut(s)	782
AciI	CCGC	3 cut(s)	519, 546, 564
AclWI	GGATC	2 cut(s)	326, 429
AcoI	YGGCCR	1 cut(s)	430
AcsI	RAATTY	2 cut(s)	116, 673
AfiI	CCNNNNNNNGG	3 cut(s)	462, 755, 782
AgeI	ACCGGT	1 cut(s)	752
AgsI	TTSAA	2 cut(s)	178, 638
AjnI	CCWGG	1 cut(s)	790
AjuI	GAANNNNNNNTTGG	2 cut(s)	769, 801
AluBI	AGCT	5 cut(s)	232, 480, 582, 744, 852
AluI	AGCT	5 cut(s)	232, 480, 582, 744, 852
Alw26I	GTCTC	2 cut(s)	42, 73
AlwI	GGATC	2 cut(s)	326, 429
AoxI	GGCC	4 cut(s)	405, 430, 464, 891
ApeKI	GCWGC	1 cut(s)	741
ApoI	RAATTY	2 cut(s)	116, 673
AsiGI	ACCGGT	1 cut(s)	752
AspS9I	GGNCC	2 cut(s)	186, 891
AsuC2I	CCSGG	1 cut(s)	46
AsuHPI	GGTGA	3 cut(s)	457, 509, 746
AvaII	GGWCC	1 cut(s)	186
AxyI	CCTNAGG	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	753
BccI	CCATC	5 cut(s)	94, 198, 260, 407, 494
BceAI	ACGGC	1 cut(s)	417
BciT130I	CCWGG	1 cut(s)	792
BcnI	CCSGG	1 cut(s)	46
BcoDI	GTCTC	2 cut(s)	42, 73
BfaI	CTAG	1 cut(s)	645
BfmI	CTRYAG	1 cut(s)	141
BglI	GCCNNNNNGGC	1 cut(s)	404
BisI	GCNGC	1 cut(s)	742
BlsI	GCNGC	1 cut(s)	743
Bme1390I	CCNGG	2 cut(s)	46, 792
Bme18I	GGWCC	1 cut(s)	186
BmgT120I	GGNCC	2 cut(s)	186, 891
BmiI	GGNNCC	1 cut(s)	188
BmrFI	CCNGG	2 cut(s)	46, 792
BmsI	GCATC	3 cut(s)	194, 301, 398
BpiI	GAAGAC	1 cut(s)	162
BplI	GAGNNNNNCTC	2 cut(s)	454, 486
BpuEI	CTTGAG	1 cut(s)	130
BpuMI	CCSGG	1 cut(s)	46
BsaJI	CCNNGG	2 cut(s)	216, 408
BsaWI	WCCGGW	1 cut(s)	752
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bsc4I	CCNNNNNNNGG	3 cut(s)	462, 755, 782
Bse118I	RCCGGY	1 cut(s)	752
Bse1I	ACTGG	2 cut(s)	706, 811
Bse21I	CCTNAGG	1 cut(s)	381
Bse3DI	GCAATG	1 cut(s)	595
BseBI	CCWGG	1 cut(s)	792
BseDI	CCNNGG	2 cut(s)	216, 408
BseGI	GGATG	3 cut(s)	212, 268, 418
BseLI	CCNNNNNNNGG	3 cut(s)	462, 755, 782
BseMI	GCAATG	1 cut(s)	595
BseMII	CTCAG	4 cut(s)	53, 84, 266, 372
BseNI	ACTGG	2 cut(s)	706, 811
BseRI	GAGGAG	2 cut(s)	459, 507
BseXI	GCAGC	1 cut(s)	753
BshFI	GGCC	4 cut(s)	407, 432, 466, 893
BshTI	ACCGGT	1 cut(s)	752
BsiSI	CCGG	2 cut(s)	46, 753
BslFI	GGGAC	1 cut(s)	878
BslI	CCNNNNNNNGG	3 cut(s)	462, 755, 782
BsmAI	GTCTC	2 cut(s)	42, 73
BsmFI	GGGAC	1 cut(s)	878
BsnI	GGCC	4 cut(s)	407, 432, 466, 893
Bsp143I	GATC	4 cut(s)	153, 318, 344, 421
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	3 cut(s)	519, 546, 564
BspANI	GGCC	4 cut(s)	407, 432, 466, 893
BspCNI	CTCAG	4 cut(s)	52, 83, 267, 373
BspLI	GGNNCC	1 cut(s)	188
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	2 cut(s)	326, 429
BsrDI	GCAATG	1 cut(s)	595
BsrFI	RCCGGY	1 cut(s)	752
BsrI	ACTGG	2 cut(s)	706, 811
BssAI	RCCGGY	1 cut(s)	752
BssECI	CCNNGG	2 cut(s)	216, 408
BssMI	GATC	4 cut(s)	153, 318, 344, 421
BssT1I	CCWWGG	2 cut(s)	216, 408
Bst2UI	CCWGG	1 cut(s)	792
Bst4CI	ACNGT	6 cut(s)	183, 332, 533, 554, 596, 848
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstC8I	GCNNGC	4 cut(s)	81, 85, 145, 149
BstDEI	CTNAG	4 cut(s)	39, 70, 275, 381
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	3 cut(s)	212, 268, 418
BstKTI	GATC	4 cut(s)	156, 321, 347, 424
BstMAI	GTCTC	2 cut(s)	42, 73
BstMBI	GATC	4 cut(s)	153, 318, 344, 421
BstMWI	GCNNNNNNNGC	4 cut(s)	395, 404, 570, 579
BstNI	CCWGG	1 cut(s)	792
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	2 cut(s)	44, 790
BstSFI	CTRYAG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	753
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
Bsu36I	CCTNAGG	1 cut(s)	381
BsuRI	GGCC	4 cut(s)	407, 432, 466, 893
BtgI	CCRYGG	1 cut(s)	216
BtgZI	GCGATG	1 cut(s)	113
BtsCI	GGATG	3 cut(s)	212, 268, 418
BtsI	GCAGTG	1 cut(s)	844
BtsIMutI	CAGTG	2 cut(s)	538, 844
Cac8I	GCNNGC	4 cut(s)	81, 85, 145, 149
Cfr10I	RCCGGY	1 cut(s)	752
Cfr13I	GGNCC	2 cut(s)	186, 891
CspAI	ACCGGT	1 cut(s)	752
CviAII	CATG	3 cut(s)	208, 217, 428
DdeI	CTNAG	4 cut(s)	39, 70, 275, 381
DpnI	GATC	4 cut(s)	155, 320, 346, 423
DpnII	GATC	4 cut(s)	153, 318, 344, 421
EaeI	YGGCCR	1 cut(s)	430
EciI	GGCGGA	2 cut(s)	534, 579
Eco130I	CCWWGG	2 cut(s)	216, 408
Eco147I	AGGCCT	2 cut(s)	407, 466
Eco47I	GGWCC	1 cut(s)	186
Eco81I	CCTNAGG	1 cut(s)	381
EcoO109I	RGGNCCY	1 cut(s)	891
EcoRII	CCWGG	1 cut(s)	790
EcoT14I	CCWWGG	2 cut(s)	216, 408
EcoT22I	ATGCAT	1 cut(s)	209
ErhI	CCWWGG	2 cut(s)	216, 408
FaeI	CATG	3 cut(s)	211, 220, 431
FaqI	GGGAC	1 cut(s)	878
FatI	CATG	3 cut(s)	207, 216, 427
Fnu4HI	GCNGC	1 cut(s)	742
FokI	GGATG	3 cut(s)	199, 275, 425
Fsp4HI	GCNGC	1 cut(s)	742
FspBI	CTAG	1 cut(s)	645
GluI	GCNGC	1 cut(s)	742
HaeIII	GGCC	4 cut(s)	407, 432, 466, 893
HapII	CCGG	2 cut(s)	46, 753
Hin1II	CATG	3 cut(s)	211, 220, 431
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	1 cut(s)	66
HpaII	CCGG	2 cut(s)	46, 753
HphI	GGTGA	3 cut(s)	457, 509, 746
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	7 cut(s)	42, 73, 163, 242, 258, 276, 885
Hpy188III	TCNNGA	2 cut(s)	109, 348
Hpy8I	GTNNAC	1 cut(s)	186
HpyAV	CCTTC	1 cut(s)	693
HpyCH4III	ACNGT	6 cut(s)	183, 332, 533, 554, 596, 848
HpyCH4V	TGCA	5 cut(s)	143, 207, 290, 314, 389
HpyF10VI	GCNNNNNNNGC	4 cut(s)	395, 404, 570, 579
HpyF3I	CTNAG	4 cut(s)	39, 70, 275, 381
Hsp92II	CATG	3 cut(s)	211, 220, 431
Kzo9I	GATC	4 cut(s)	153, 318, 344, 421
Lsp1109I	GCAGC	1 cut(s)	753
LweI	GCATC	3 cut(s)	194, 301, 398
MaeI	CTAG	1 cut(s)	645
MaeIII	GTNAC	6 cut(s)	91, 364, 506, 527, 548, 734
MalI	GATC	4 cut(s)	155, 320, 346, 423
MboI	GATC	4 cut(s)	153, 318, 344, 421
MboII	GAAGA	2 cut(s)	162, 416
MflI	RGATCY	1 cut(s)	421
MluCI	AATT	5 cut(s)	116, 448, 613, 673, 778
MlyI	GAGTC	1 cut(s)	75
MmeI	TCCRAC	1 cut(s)	781
Mph1103I	ATGCAT	1 cut(s)	209
MslI	CAYNNNNRTG	1 cut(s)	432
MspI	CCGG	2 cut(s)	46, 753
MspR9I	CCNGG	2 cut(s)	46, 792
MvaI	CCWGG	1 cut(s)	792
MwoI	GCNNNNNNNGC	4 cut(s)	395, 404, 570, 579
NciI	CCSGG	1 cut(s)	46
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	4 cut(s)	153, 318, 344, 421
NlaIII	CATG	3 cut(s)	211, 220, 431
NlaIV	GGNNCC	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	734
NsiI	ATGCAT	1 cut(s)	209
NspI	RCATGY	1 cut(s)	211
PceI	AGGCCT	2 cut(s)	407, 466
PflMI	CCANNNNNTGG	1 cut(s)	782
PinAI	ACCGGT	1 cut(s)	752
PkrI	GCNGC	1 cut(s)	743
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PsiI	TTATAA	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	790
PspGI	CCWGG	1 cut(s)	790
PspN4I	GGNNCC	1 cut(s)	188
PspPI	GGNCC	2 cut(s)	186, 891
PstI	CTGCAG	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	421
RseI	CAYNNNNRTG	1 cut(s)	432
SatI	GCNGC	1 cut(s)	742
Sau3AI	GATC	4 cut(s)	153, 318, 344, 421
Sau96I	GGNCC	2 cut(s)	186, 891
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	2 cut(s)	46, 792
SfaNI	GCATC	3 cut(s)	194, 301, 398
SfcI	CTRYAG	1 cut(s)	141
SgrAI	CRCCGGYG	1 cut(s)	752
SinI	GGWCC	1 cut(s)	186
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
Sse9I	AATT	5 cut(s)	116, 448, 613, 673, 778
SseBI	AGGCCT	2 cut(s)	407, 466
SsiI	CCGC	3 cut(s)	519, 546, 564
SspMI	CTAG	1 cut(s)	645
StuI	AGGCCT	2 cut(s)	407, 466
StyD4I	CCNGG	2 cut(s)	44, 790
StyI	CCWWGG	2 cut(s)	216, 408
TaaI	ACNGT	6 cut(s)	183, 332, 533, 554, 596, 848
TasI	AATT	5 cut(s)	116, 448, 613, 673, 778
TscAI	CASTG	2 cut(s)	538, 844
TseFI	GTSAC	1 cut(s)	734
TseI	GCWGC	1 cut(s)	741
Tsp45I	GTSAC	1 cut(s)	734
TspDTI	ATGAA	1 cut(s)	416
TspGWI	ACGGA	2 cut(s)	275, 331
TspRI	CASTG	2 cut(s)	538, 844
Van91I	CCANNNNNTGG	1 cut(s)	782
VpaK11BI	GGWCC	1 cut(s)	186
XapI	RAATTY	2 cut(s)	116, 673
XceI	RCATGY	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XspI	CTAG	1 cut(s)	645
Zsp2I	ATGCAT	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.