Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Reverse (-)

21887736 .. 21889137

Gene Structure 1402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17970.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTCATCCATGGCAAGCTCAAAGTTGTTCATCGGAGGCATTTCGTACCAGACAGATGACCAGAGTCTGAGAGAGGCTTTTCAAAAATATGGTGAAGTTGTTGAGGCAAGAATCATCATGGACCGCGAAAGTGGTAGATCAAGGGGATTTGGATTCATTACCTTCACTTCTAGCGAGGAAGCATCTAGTGCTATCCAGGCCTTGGATGGGCAGGAGCTTCATGGCCGCCGTGTAAGGGTGAATTATGCTACTGACAGGCCTCGCCCCAGCTATAATAACTACGGTGACGGTCAAAGTAGTTATGGATCTGGCGGTGGAAATAATTATGGTAACTATGGACCCAGCGGAGGTGACAGCTATGGAAGAGGAAACACTGGATATGGTCAAGGAAGCTACAACAGTCCTGGTAATTATCCAAGTGCAAACACTTATGATGCTCCCGGTGGAGGTTTTGGCAATAGCAACAATTTTGGTGCTGGTACTGCTGATAACTTCGGTGTTGGTGGTGACAACAGCTTTGGCACTGCTAGTGCTCCATTTGGAGAGAACAAAACTGGCTTTGGCCTGGATGATCCACTGGAAGGAAACGATAGGGACGATGATGATGCAGGTGACTTCGCCAAGAGGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

211

Amino Acids

22.04

Weight (kDa)

4.5

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	599
Acc36I	ACCTGC	1 cut(s)	599
AccB7I	CCANNNNNTGG	1 cut(s)	202
AccII	CGCG	1 cut(s)	126
AciI	CCGC	4 cut(s)	124, 226, 312, 345
AclWI	GGATC	2 cut(s)	313, 566
AcoI	YGGCCR	1 cut(s)	223
AfaI	GTAC	2 cut(s)	47, 481
AfiI	CCNNNNNNNGG	6 cut(s)	202, 207, 235, 347, 446, 581
AgsI	TTSAA	1 cut(s)	83
AjnI	CCWGG	3 cut(s)	195, 403, 564
AluBI	AGCT	6 cut(s)	18, 217, 270, 357, 393, 516
AluI	AGCT	6 cut(s)	18, 217, 270, 357, 393, 516
Alw21I	GWGCWC	1 cut(s)	535
AlwI	GGATC	2 cut(s)	313, 566
AlwNI	CAGNNNCTG	1 cut(s)	67
AoxI	GGCC	5 cut(s)	198, 223, 257, 562, 627
ArsI	GACNNNNNNTTYG	2 cut(s)	500, 532
AspS9I	GGNCC	3 cut(s)	121, 338, 627
AsuC2I	CCSGG	1 cut(s)	441
AsuHPI	GGTGA	6 cut(s)	104, 250, 296, 362, 518, 623
AvaII	GGWCC	2 cut(s)	121, 338
Bbv12I	GWGCWC	1 cut(s)	535
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	1 cut(s)	213
BcgI	CGANNNNNNTGC	2 cut(s)	587, 621
BciT130I	CCWGG	3 cut(s)	197, 405, 566
BcnI	CCSGG	1 cut(s)	441
BfaI	CTAG	3 cut(s)	171, 186, 528
BfuAI	ACCTGC	1 cut(s)	599
BglI	GCCNNNNNGGC	1 cut(s)	626
BisI	GCNGC	1 cut(s)	226
BlsI	GCNGC	1 cut(s)	227
Bme1390I	CCNGG	4 cut(s)	197, 405, 441, 566
Bme18I	GGWCC	2 cut(s)	121, 338
BmgT120I	GGNCC	3 cut(s)	121, 338, 627
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	4 cut(s)	197, 405, 441, 566
BmsI	GCATC	3 cut(s)	191, 424, 595
BoxI	GACNNNNGTC	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	9, 201
Bsc4I	CCNNNNNNNGG	6 cut(s)	202, 207, 235, 347, 446, 581
Bse1I	ACTGG	3 cut(s)	379, 559, 582
BseBI	CCWGG	3 cut(s)	197, 405, 566
BseDI	CCNNGG	2 cut(s)	9, 201
BseGI	GGATG	3 cut(s)	5, 211, 574
BseLI	CCNNNNNNNGG	6 cut(s)	202, 207, 235, 347, 446, 581
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	3 cut(s)	379, 559, 582
BseYI	CCCAGC	2 cut(s)	266, 341
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	5 cut(s)	200, 225, 259, 564, 629
BsiHKAI	GWGCWC	1 cut(s)	535
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	1 cut(s)	608
BslI	CCNNNNNNNGG	6 cut(s)	202, 207, 235, 347, 446, 581
BsmFI	GGGAC	1 cut(s)	608
BsnI	GGCC	5 cut(s)	200, 225, 259, 564, 629
Bsp1286I	GDGCHC	1 cut(s)	535
Bsp143I	GATC	3 cut(s)	137, 305, 571
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	4 cut(s)	124, 226, 312, 345
BspANI	GGCC	5 cut(s)	200, 225, 259, 564, 629
BspCNI	CTCAG	1 cut(s)	60
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	340
BspMI	ACCTGC	1 cut(s)	599
BspPI	GGATC	2 cut(s)	313, 566
BsrI	ACTGG	3 cut(s)	379, 559, 582
BssECI	CCNNGG	2 cut(s)	9, 201
BssMI	GATC	3 cut(s)	137, 305, 571
BssT1I	CCWWGG	2 cut(s)	9, 201
Bst2UI	CCWGG	3 cut(s)	197, 405, 566
Bst4CI	ACNGT	3 cut(s)	284, 290, 401
Bst6I	CTCTTC	1 cut(s)	358
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	3 cut(s)	5, 211, 574
BstFNI	CGCG	1 cut(s)	126
BstKTI	GATC	3 cut(s)	140, 308, 574
BstMBI	GATC	3 cut(s)	137, 305, 571
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 197, 482, 626
BstNI	CCWGG	3 cut(s)	197, 405, 566
BstPAI	GACNNNNGTC	1 cut(s)	63
BstSCI	CCNGG	4 cut(s)	195, 403, 439, 564
BstUI	CGCG	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	305
BsuRI	GGCC	5 cut(s)	200, 225, 259, 564, 629
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	3 cut(s)	5, 211, 574
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	3 cut(s)	372, 522, 575
BveI	ACCTGC	1 cut(s)	599
Cac8I	GCNNGC	1 cut(s)	16
CaiI	CAGNNNCTG	1 cut(s)	67
Cfr13I	GGNCC	3 cut(s)	121, 338, 627
Csp6I	GTAC	2 cut(s)	46, 480
CviAII	CATG	3 cut(s)	10, 118, 221
CviQI	GTAC	2 cut(s)	46, 480
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	3 cut(s)	139, 307, 573
DpnII	GATC	3 cut(s)	137, 305, 571
EaeI	YGGCCR	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
Eco130I	CCWWGG	2 cut(s)	9, 201
Eco147I	AGGCCT	2 cut(s)	200, 259
Eco47I	GGWCC	2 cut(s)	121, 338
EcoO109I	RGGNCCY	1 cut(s)	627
EcoRII	CCWGG	3 cut(s)	195, 403, 564
EcoT14I	CCWWGG	2 cut(s)	9, 201
ErhI	CCWWGG	2 cut(s)	9, 201
FaeI	CATG	3 cut(s)	13, 121, 224
FaqI	GGGAC	1 cut(s)	608
FatI	CATG	3 cut(s)	9, 117, 220
Fnu4HI	GCNGC	1 cut(s)	226
FokI	GGATG	2 cut(s)	218, 581
Fsp4HI	GCNGC	1 cut(s)	226
FspBI	CTAG	3 cut(s)	171, 186, 528
GluI	GCNGC	1 cut(s)	226
GsaI	CCCAGC	2 cut(s)	270, 345
HaeIII	GGCC	5 cut(s)	200, 225, 259, 564, 629
HapII	CCGG	1 cut(s)	441
Hin1II	CATG	3 cut(s)	13, 121, 224
HinfI	GANTC	3 cut(s)	64, 111, 153
HpaII	CCGG	1 cut(s)	441
HphI	GGTGA	6 cut(s)	104, 250, 296, 362, 518, 623
Hpy188I	TCNGA	2 cut(s)	35, 69
HpyAV	CCTTC	2 cut(s)	172, 575
HpyCH4III	ACNGT	3 cut(s)	284, 290, 401
HpyCH4V	TGCA	2 cut(s)	422, 608
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 197, 482, 626
HpyF3I	CTNAG	1 cut(s)	68
Hsp92II	CATG	3 cut(s)	13, 121, 224
Kzo9I	GATC	3 cut(s)	137, 305, 571
LmnI	GCTCC	3 cut(s)	214, 442, 538
LweI	GCATC	3 cut(s)	191, 424, 595
MaeI	CTAG	3 cut(s)	171, 186, 528
MaeIII	GTNAC	5 cut(s)	284, 329, 350, 506, 611
MalI	GATC	3 cut(s)	139, 307, 573
MboI	GATC	3 cut(s)	137, 305, 571
MboII	GAAGA	1 cut(s)	375
MflI	RGATCY	1 cut(s)	305
MhlI	GDGCHC	1 cut(s)	535
MluCI	AATT	4 cut(s)	241, 322, 409, 466
MlyI	GAGTC	1 cut(s)	73
MnlI	CCTC	9 cut(s)	29, 67, 97, 169, 270, 341, 359, 440, 618
MspA1I	CMGCKG	1 cut(s)	345
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	4 cut(s)	197, 405, 441, 566
MvaI	CCWGG	3 cut(s)	197, 405, 566
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	4 cut(s)	188, 197, 482, 626
NciI	CCSGG	1 cut(s)	441
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	3 cut(s)	137, 305, 571
NlaIII	CATG	3 cut(s)	13, 121, 224
NlaIV	GGNNCC	1 cut(s)	340
NmuCI	GTSAC	4 cut(s)	284, 350, 506, 611
PaqCI	CACCTGC	1 cut(s)	599
PceI	AGGCCT	2 cut(s)	200, 259
PcsI	WCGNNNNNNNCGW	1 cut(s)	594
PfeI	GAWTC	2 cut(s)	111, 153
PflMI	CCANNNNNTGG	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	227
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PshAI	GACNNNNGTC	1 cut(s)	63
Psp6I	CCWGG	3 cut(s)	195, 403, 564
PspFI	CCCAGC	2 cut(s)	266, 341
PspGI	CCWGG	3 cut(s)	195, 403, 564
PspN4I	GGNNCC	1 cut(s)	340
PspPI	GGNCC	3 cut(s)	121, 338, 627
PstNI	CAGNNNCTG	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	305
RsaI	GTAC	2 cut(s)	47, 481
RsaNI	GTAC	2 cut(s)	46, 480
SatI	GCNGC	1 cut(s)	226
Sau3AI	GATC	3 cut(s)	137, 305, 571
Sau96I	GGNCC	3 cut(s)	121, 338, 627
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	4 cut(s)	197, 405, 441, 566
SduI	GDGCHC	1 cut(s)	535
SfaNI	GCATC	3 cut(s)	191, 424, 595
SinI	GGWCC	2 cut(s)	121, 338
Sse9I	AATT	4 cut(s)	241, 322, 409, 466
SseBI	AGGCCT	2 cut(s)	200, 259
SsiI	CCGC	4 cut(s)	124, 226, 312, 345
SspMI	CTAG	3 cut(s)	171, 186, 528
StuI	AGGCCT	2 cut(s)	200, 259
StyD4I	CCNGG	4 cut(s)	195, 403, 439, 564
StyI	CCWWGG	2 cut(s)	9, 201
TaaI	ACNGT	3 cut(s)	284, 290, 401
TasI	AATT	4 cut(s)	241, 322, 409, 466
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	2 cut(s)	111, 153
TscAI	CASTG	3 cut(s)	379, 529, 582
TseFI	GTSAC	4 cut(s)	284, 350, 506, 611
Tsp45I	GTSAC	4 cut(s)	284, 350, 506, 611
TspDTI	ATGAA	3 cut(s)	19, 145, 209
TspRI	CASTG	3 cut(s)	379, 529, 582
Van91I	CCANNNNNTGG	1 cut(s)	202
VpaK11BI	GGWCC	2 cut(s)	121, 338
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XspI	CTAG	3 cut(s)	171, 186, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.