Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Forward (+)

25269784 .. 25270401

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1142900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTCATCCATGGGAAGCTCAAAGCTCTTCATCGGAGGTGTTTCGTACCAGACAGATGACCAGAGTCTGAGGGAGGCTTTTCAAAAATACGGTGAAGTTGTAGACGCAAGAATCATCATGGACCGTGAAAGTGGTAGATCAAGAGGATTTGGATTCGTTACTTTCACTTCTAATGAGGAGGCAGCTAGTGCTCTCGAGGCCTTGGATGGGCAGGAGCTTCATGGCCGACGAGTAAGGGTGAATTATGCTACCGAAAGGCCTCGCCCCAGCTATAATAATTACGGTGATGGTCAAAATAGTTATGCACCTGGTGGTGGATTTAGTAACTATGGACCCGGTGGAGGTGACAGCTATGGAAGAGGAAACACTGGATATGGTCCAGGAAGCTACAACAGTCCTAGCAATTATCCAAGTGCAAACACTTACGATGCTCCCAGTGGAAGTAGCAACAATTTTGGTGTTGGTAGTGGTGATAACTTCGGTGTTGGTGGTGACAACAGCTTTGGCACTCCTGATGCTCCATTTGGAGAGAACAAACCTGGCTTTGGCCTGGATGATTCATTGGAAGCAAACGATAAGGACGATGATGACGCGGGTGACTTCGCCAAGAGGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

206

Amino Acids

21.59

Weight (kDa)

4.42

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 79	1.1e-22	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	102
AccII	CGCG	1 cut(s)	593
AciI	CCGC	1 cut(s)	593
AcoI	YGGCCR	1 cut(s)	223
AdeI	CACNNNGTG	1 cut(s)	311
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	4 cut(s)	207, 314, 341, 545
AgsI	TTSAA	1 cut(s)	83
AjnI	CCWGG	4 cut(s)	307, 379, 538, 549
AluBI	AGCT	8 cut(s)	18, 25, 185, 217, 270, 351, 387, 501
AluI	AGCT	8 cut(s)	18, 25, 185, 217, 270, 351, 387, 501
Alw21I	GWGCWC	1 cut(s)	193
AlwNI	CAGNNNCTG	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	5 cut(s)	198, 223, 257, 547, 612
ApeKI	GCWGC	1 cut(s)	182
ArsI	GACNNNNNNTTYG	2 cut(s)	485, 517
AspS9I	GGNCC	4 cut(s)	121, 332, 377, 612
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	7 cut(s)	104, 250, 296, 356, 482, 503, 608
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	3 cut(s)	121, 332, 377
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	2 cut(s)	200, 281
BciT130I	CCWGG	4 cut(s)	309, 381, 540, 551
BcnI	CCSGG	1 cut(s)	336
BfaI	CTAG	2 cut(s)	186, 399
BglI	GCCNNNNNGGC	1 cut(s)	611
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme1390I	CCNGG	5 cut(s)	309, 336, 381, 540, 551
Bme18I	GGWCC	3 cut(s)	121, 332, 377
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	4 cut(s)	121, 332, 377, 612
BmiI	GGNNCC	1 cut(s)	334
BmrFI	CCNGG	5 cut(s)	309, 336, 381, 540, 551
BmrI	ACTGGG	1 cut(s)	429
BmsI	GCATC	2 cut(s)	418, 505
BmuI	ACTGGG	1 cut(s)	429
BoxI	GACNNNNGTC	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	336
BsaJI	CCNNGG	2 cut(s)	9, 201
Bsc4I	CCNNNNNNNGG	4 cut(s)	207, 314, 341, 545
Bse1I	ACTGG	2 cut(s)	373, 435
BseBI	CCWGG	4 cut(s)	309, 381, 540, 551
BseDI	CCNNGG	2 cut(s)	9, 201
BseGI	GGATG	3 cut(s)	5, 211, 559
BseLI	CCNNNNNNNGG	4 cut(s)	207, 314, 341, 545
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	2 cut(s)	373, 435
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	194
BseYI	CCCAGC	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	593
BshFI	GGCC	5 cut(s)	200, 225, 259, 549, 614
BsiHKAI	GWGCWC	1 cut(s)	193
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	336
BslI	CCNNNNNNNGG	4 cut(s)	207, 314, 341, 545
BsnI	GGCC	5 cut(s)	200, 225, 259, 549, 614
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	137
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	1 cut(s)	593
BspANI	GGCC	5 cut(s)	200, 225, 259, 549, 614
BspCNI	CTCAG	1 cut(s)	60
BspFNI	CGCG	1 cut(s)	593
BspLI	GGNNCC	1 cut(s)	334
BspQI	GCTCTTC	1 cut(s)	32
BsrI	ACTGG	2 cut(s)	373, 435
BssECI	CCNNGG	2 cut(s)	9, 201
BssMI	GATC	1 cut(s)	137
BssT1I	CCWWGG	2 cut(s)	9, 201
Bst2UI	CCWGG	4 cut(s)	309, 381, 540, 551
Bst4CI	ACNGT	4 cut(s)	92, 125, 284, 395
Bst6I	CTCTTC	2 cut(s)	32, 352
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	3 cut(s)	5, 211, 559
BstFNI	CGCG	1 cut(s)	593
BstKTI	GATC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	137
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 197, 611
BstNI	CCWGG	4 cut(s)	309, 381, 540, 551
BstPAI	GACNNNNGTC	1 cut(s)	63
BstSCI	CCNGG	5 cut(s)	307, 334, 379, 538, 549
BstUI	CGCG	1 cut(s)	593
BstV1I	GCAGC	1 cut(s)	194
BsuRI	GGCC	5 cut(s)	200, 225, 259, 549, 614
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	3 cut(s)	5, 211, 559
BtsIMutI	CAGTG	2 cut(s)	366, 442
CaiI	CAGNNNCTG	1 cut(s)	67
Cfr13I	GGNCC	4 cut(s)	121, 332, 377, 612
CseI	GACGC	2 cut(s)	113, 599
CsiI	ACCWGGT	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	3 cut(s)	10, 118, 221
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	1 cut(s)	139
DpnII	GATC	1 cut(s)	137
DraIII	CACNNNGTG	1 cut(s)	311
EaeI	YGGCCR	1 cut(s)	223
Eam1104I	CTCTTC	2 cut(s)	32, 352
EarI	CTCTTC	2 cut(s)	32, 352
Eco130I	CCWWGG	2 cut(s)	9, 201
Eco147I	AGGCCT	2 cut(s)	200, 259
Eco47I	GGWCC	3 cut(s)	121, 332, 377
Eco88I	CYCGRG	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	612
EcoRII	CCWGG	4 cut(s)	307, 379, 538, 549
EcoT14I	CCWWGG	2 cut(s)	9, 201
ErhI	CCWWGG	2 cut(s)	9, 201
FaeI	CATG	3 cut(s)	13, 121, 224
FaiI	YATR	9 cut(s)	11, 119, 222, 246, 273, 303, 330, 354, 375
FatI	CATG	3 cut(s)	9, 117, 220
FauI	CCCGC	1 cut(s)	586
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	2 cut(s)	218, 566
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	2 cut(s)	186, 399
GluI	GCNGC	1 cut(s)	183
GsaI	CCCAGC	1 cut(s)	270
HaeIII	GGCC	5 cut(s)	200, 225, 259, 549, 614
HapII	CCGG	1 cut(s)	336
HgaI	GACGC	2 cut(s)	113, 599
Hin1II	CATG	3 cut(s)	13, 121, 224
HinfI	GANTC	4 cut(s)	64, 111, 153, 557
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	7 cut(s)	104, 250, 296, 356, 482, 503, 608
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	35, 69
Hpy188III	TCNNGA	3 cut(s)	141, 194, 512
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	1 cut(s)	231
HpyCH4III	ACNGT	4 cut(s)	92, 125, 284, 395
HpyCH4V	TGCA	2 cut(s)	305, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 197, 611
HpyF3I	CTNAG	1 cut(s)	68
Hsp92II	CATG	3 cut(s)	13, 121, 224
Kzo9I	GATC	1 cut(s)	137
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	3 cut(s)	214, 436, 523
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	2 cut(s)	418, 505
MabI	ACCWGGT	1 cut(s)	307
MaeI	CTAG	2 cut(s)	186, 399
MaeIII	GTNAC	5 cut(s)	157, 323, 344, 491, 596
MalI	GATC	1 cut(s)	139
MboI	GATC	1 cut(s)	137
MboII	GAAGA	2 cut(s)	19, 369
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	4 cut(s)	241, 277, 403, 451
MlyI	GAGTC	1 cut(s)	73
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	5 cut(s)	309, 336, 381, 540, 551
MvaI	CCWGG	4 cut(s)	309, 381, 540, 551
MvnI	CGCG	1 cut(s)	593
MwoI	GCNNNNNNNGC	3 cut(s)	188, 197, 611
NciI	CCSGG	1 cut(s)	336
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	1 cut(s)	137
NlaIII	CATG	3 cut(s)	13, 121, 224
NlaIV	GGNNCC	1 cut(s)	334
NmuCI	GTSAC	3 cut(s)	344, 491, 596
PaeR7I	CTCGAG	1 cut(s)	194
PceI	AGGCCT	2 cut(s)	200, 259
PciSI	GCTCTTC	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	1 cut(s)	579
PfeI	GAWTC	3 cut(s)	111, 153, 557
PfoI	TCCNGGA	1 cut(s)	379
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PshAI	GACNNNNGTC	1 cut(s)	63
Psp6I	CCWGG	4 cut(s)	307, 379, 538, 549
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	4 cut(s)	307, 379, 538, 549
PspN4I	GGNNCC	1 cut(s)	334
PspPI	GGNCC	4 cut(s)	121, 332, 377, 612
PstNI	CAGNNNCTG	1 cut(s)	67
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SapI	GCTCTTC	1 cut(s)	32
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	1 cut(s)	137
Sau96I	GGNCC	4 cut(s)	121, 332, 377, 612
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	5 cut(s)	309, 336, 381, 540, 551
SduI	GDGCHC	1 cut(s)	193
SexAI	ACCWGGT	1 cut(s)	307
SfaNI	GCATC	2 cut(s)	418, 505
Sfr274I	CTCGAG	1 cut(s)	194
SinI	GGWCC	3 cut(s)	121, 332, 377
SlaI	CTCGAG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	4 cut(s)	241, 277, 403, 451
SseBI	AGGCCT	2 cut(s)	200, 259
SsiI	CCGC	1 cut(s)	593
SspMI	CTAG	2 cut(s)	186, 399
StuI	AGGCCT	2 cut(s)	200, 259
StyD4I	CCNGG	5 cut(s)	307, 334, 379, 538, 549
StyI	CCWWGG	2 cut(s)	9, 201
TaaI	ACNGT	4 cut(s)	92, 125, 284, 395
TaqI	TCGA	1 cut(s)	195
TasI	AATT	4 cut(s)	241, 277, 403, 451
TfiI	GAWTC	3 cut(s)	111, 153, 557
TscAI	CASTG	2 cut(s)	373, 442
TseFI	GTSAC	3 cut(s)	344, 491, 596
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	3 cut(s)	344, 491, 596
TspDTI	ATGAA	3 cut(s)	19, 209, 549
TspRI	CASTG	2 cut(s)	373, 442
VpaK11BI	GGWCC	3 cut(s)	121, 332, 377
XhoI	CTCGAG	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	2 cut(s)	186, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.