Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Reverse (-)

35605463 .. 35608219

Gene Structure 2757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1225200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTCATCCATGGCAAGCTCAAAGCTGTTCATCGGAGGTATTTCGTACCAGACAGATGACCAGAGTCTGAGAGAGGCTTTTCAAAAATATGGTGAAGTTGTTGAGGCAAGAATCATCATGGACCGCGAAAGTGGTAGATCAAGGGGATTTGGATTCATTACCTTCACTTCTAGCGAGGAGGCATCTAGTGCTATCCAGGCCTTGGATGGGCAGGAGCTTCATGGCCGCCGAGTAAGGGTGAATTATGCTACTGACAGGCCTCGCCCCAGCTATAATAACTACGGTGATGGTCAAAGTAGTTATGGTGGTGGAAATAATTATGGTAACTACGGAACCGGCGGAGGTGACAGCTATGGAAGAGGAAACCCTGGATATGGTCAAGGAAGCTACAACAGTCCTGGTAATTATCCAAGTGCAAACGCTTATGATGCTCCCGGTGGAGGTTTTGGCAATAGCAACACTTTTGGTGCTGGTACTGCTGATAACTTCGGTGTTGGTGGCGACAACAGCTTTGGCACTGCTAGTGCTCCATTTGGAGAGAACAAAACTGGCTTTGGCCTGGATGATCCACTGGAAGGAAACGATAGGGACGATGATGATGCTGGTGACTTCGCCAAGAGGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

209

Amino Acids

21.82

Weight (kDa)

4.5

Isoelectric Point (pI)

38.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 79	1.2e-22	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	202
AccII	CGCG	1 cut(s)	126
AciI	CCGC	3 cut(s)	124, 226, 339
AclWI	GGATC	1 cut(s)	560
AcoI	YGGCCR	1 cut(s)	223
AfaI	GTAC	2 cut(s)	47, 475
AfiI	CCNNNNNNNGG	6 cut(s)	202, 207, 235, 374, 440, 575
AgsI	TTSAA	1 cut(s)	83
AjnI	CCWGG	4 cut(s)	195, 367, 397, 558
AluBI	AGCT	7 cut(s)	18, 25, 217, 270, 351, 387, 510
AluI	AGCT	7 cut(s)	18, 25, 217, 270, 351, 387, 510
Alw21I	GWGCWC	1 cut(s)	529
AlwI	GGATC	1 cut(s)	560
AlwNI	CAGNNNCTG	1 cut(s)	67
AoxI	GGCC	5 cut(s)	198, 223, 257, 556, 621
ArsI	GACNNNNNNTTYG	2 cut(s)	494, 526
AspS9I	GGNCC	2 cut(s)	121, 621
AsuC2I	CCSGG	1 cut(s)	435
AsuHPI	GGTGA	5 cut(s)	104, 250, 296, 356, 617
AvaII	GGWCC	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	529
BccI	CCATC	2 cut(s)	200, 281
BcgI	CGANNNNNNTGC	2 cut(s)	581, 615
BciT130I	CCWGG	4 cut(s)	197, 369, 399, 560
BcnI	CCSGG	1 cut(s)	435
BfaI	CTAG	3 cut(s)	171, 186, 522
BglI	GCCNNNNNGGC	1 cut(s)	620
BisI	GCNGC	1 cut(s)	226
BlsI	GCNGC	1 cut(s)	227
Bme1390I	CCNGG	5 cut(s)	197, 369, 399, 435, 560
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	121, 621
BmiI	GGNNCC	1 cut(s)	334
BmrFI	CCNGG	5 cut(s)	197, 369, 399, 435, 560
BmsI	GCATC	3 cut(s)	191, 418, 589
BoxI	GACNNNNGTC	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	435
BsaJI	CCNNGG	3 cut(s)	9, 201, 367
Bsc4I	CCNNNNNNNGG	6 cut(s)	202, 207, 235, 374, 440, 575
Bse118I	RCCGGY	1 cut(s)	335
Bse1I	ACTGG	2 cut(s)	553, 576
BseBI	CCWGG	4 cut(s)	197, 369, 399, 560
BseDI	CCNNGG	3 cut(s)	9, 201, 367
BseGI	GGATG	3 cut(s)	5, 211, 568
BseLI	CCNNNNNNNGG	6 cut(s)	202, 207, 235, 374, 440, 575
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	2 cut(s)	553, 576
BseRI	GAGGAG	1 cut(s)	191
BseYI	CCCAGC	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	5 cut(s)	200, 225, 259, 558, 623
BsiHKAI	GWGCWC	1 cut(s)	529
BsiSI	CCGG	2 cut(s)	336, 435
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	6 cut(s)	202, 207, 235, 374, 440, 575
BsmFI	GGGAC	1 cut(s)	602
BsnI	GGCC	5 cut(s)	200, 225, 259, 558, 623
Bsp1286I	GDGCHC	1 cut(s)	529
Bsp143I	GATC	2 cut(s)	137, 565
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	3 cut(s)	124, 226, 339
BspANI	GGCC	5 cut(s)	200, 225, 259, 558, 623
BspCNI	CTCAG	1 cut(s)	60
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	334
BspPI	GGATC	1 cut(s)	560
BsrFI	RCCGGY	1 cut(s)	335
BsrI	ACTGG	2 cut(s)	553, 576
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	3 cut(s)	9, 201, 367
BssMI	GATC	2 cut(s)	137, 565
BssT1I	CCWWGG	2 cut(s)	9, 201
Bst2UI	CCWGG	4 cut(s)	197, 369, 399, 560
Bst4CI	ACNGT	2 cut(s)	284, 395
Bst6I	CTCTTC	1 cut(s)	352
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	3 cut(s)	5, 211, 568
BstFNI	CGCG	1 cut(s)	126
BstKTI	GATC	2 cut(s)	140, 568
BstMBI	GATC	2 cut(s)	137, 565
BstMWI	GCNNNNNNNGC	6 cut(s)	188, 197, 428, 476, 507, 620
BstNI	CCWGG	4 cut(s)	197, 369, 399, 560
BstPAI	GACNNNNGTC	1 cut(s)	63
BstSCI	CCNGG	5 cut(s)	195, 367, 397, 433, 558
BstUI	CGCG	1 cut(s)	126
BsuRI	GGCC	5 cut(s)	200, 225, 259, 558, 623
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	3 cut(s)	5, 211, 568
BtsI	GCAGTG	1 cut(s)	516
BtsIMutI	CAGTG	2 cut(s)	516, 569
Cac8I	GCNNGC	1 cut(s)	16
CaiI	CAGNNNCTG	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	2 cut(s)	121, 621
Csp6I	GTAC	2 cut(s)	46, 474
CviAII	CATG	3 cut(s)	10, 118, 221
CviQI	GTAC	2 cut(s)	46, 474
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	2 cut(s)	139, 567
DpnII	GATC	2 cut(s)	137, 565
EaeI	YGGCCR	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	352
EciI	GGCGGA	1 cut(s)	354
Eco130I	CCWWGG	2 cut(s)	9, 201
Eco147I	AGGCCT	2 cut(s)	200, 259
Eco47I	GGWCC	1 cut(s)	121
EcoO109I	RGGNCCY	1 cut(s)	621
EcoRII	CCWGG	4 cut(s)	195, 367, 397, 558
EcoT14I	CCWWGG	2 cut(s)	9, 201
ErhI	CCWWGG	2 cut(s)	9, 201
FaeI	CATG	3 cut(s)	13, 121, 224
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	3 cut(s)	9, 117, 220
Fnu4HI	GCNGC	1 cut(s)	226
FokI	GGATG	2 cut(s)	218, 575
Fsp4HI	GCNGC	1 cut(s)	226
FspBI	CTAG	3 cut(s)	171, 186, 522
GluI	GCNGC	1 cut(s)	226
GsaI	CCCAGC	1 cut(s)	270
HaeIII	GGCC	5 cut(s)	200, 225, 259, 558, 623
HapII	CCGG	2 cut(s)	336, 435
Hin1II	CATG	3 cut(s)	13, 121, 224
HinfI	GANTC	3 cut(s)	64, 111, 153
HpaII	CCGG	2 cut(s)	336, 435
HphI	GGTGA	5 cut(s)	104, 250, 296, 356, 617
Hpy188I	TCNGA	2 cut(s)	35, 69
HpyAV	CCTTC	2 cut(s)	172, 569
HpyCH4III	ACNGT	2 cut(s)	284, 395
HpyCH4V	TGCA	1 cut(s)	416
HpyF10VI	GCNNNNNNNGC	6 cut(s)	188, 197, 428, 476, 507, 620
HpyF3I	CTNAG	1 cut(s)	68
Hsp92II	CATG	3 cut(s)	13, 121, 224
Kzo9I	GATC	2 cut(s)	137, 565
LmnI	GCTCC	3 cut(s)	214, 436, 532
LweI	GCATC	3 cut(s)	191, 418, 589
MaeI	CTAG	3 cut(s)	171, 186, 522
MaeIII	GTNAC	3 cut(s)	323, 344, 605
MalI	GATC	2 cut(s)	139, 567
MboI	GATC	2 cut(s)	137, 565
MboII	GAAGA	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	529
MluCI	AATT	3 cut(s)	241, 316, 403
MlyI	GAGTC	1 cut(s)	73
MspI	CCGG	2 cut(s)	336, 435
MspR9I	CCNGG	5 cut(s)	197, 369, 399, 435, 560
MvaI	CCWGG	4 cut(s)	197, 369, 399, 560
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	6 cut(s)	188, 197, 428, 476, 507, 620
NciI	CCSGG	1 cut(s)	435
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	2 cut(s)	137, 565
NlaIII	CATG	3 cut(s)	13, 121, 224
NlaIV	GGNNCC	1 cut(s)	334
NmeAIII	GCCGAG	1 cut(s)	254
NmuCI	GTSAC	2 cut(s)	344, 605
PceI	AGGCCT	2 cut(s)	200, 259
PcsI	WCGNNNNNNNCGW	1 cut(s)	588
PfeI	GAWTC	2 cut(s)	111, 153
PflMI	CCANNNNNTGG	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	227
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PshAI	GACNNNNGTC	1 cut(s)	63
Psp6I	CCWGG	4 cut(s)	195, 367, 397, 558
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	4 cut(s)	195, 367, 397, 558
PspN4I	GGNNCC	1 cut(s)	334
PspPI	GGNCC	2 cut(s)	121, 621
PstNI	CAGNNNCTG	1 cut(s)	67
RsaI	GTAC	2 cut(s)	47, 475
RsaNI	GTAC	2 cut(s)	46, 474
SatI	GCNGC	1 cut(s)	226
Sau3AI	GATC	2 cut(s)	137, 565
Sau96I	GGNCC	2 cut(s)	121, 621
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	5 cut(s)	197, 369, 399, 435, 560
SduI	GDGCHC	1 cut(s)	529
SfaNI	GCATC	3 cut(s)	191, 418, 589
SinI	GGWCC	1 cut(s)	121
Sse9I	AATT	3 cut(s)	241, 316, 403
SseBI	AGGCCT	2 cut(s)	200, 259
SsiI	CCGC	3 cut(s)	124, 226, 339
SspMI	CTAG	3 cut(s)	171, 186, 522
StuI	AGGCCT	2 cut(s)	200, 259
StyD4I	CCNGG	5 cut(s)	195, 367, 397, 433, 558
StyI	CCWWGG	2 cut(s)	9, 201
TaaI	ACNGT	2 cut(s)	284, 395
TasI	AATT	3 cut(s)	241, 316, 403
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	2 cut(s)	111, 153
TscAI	CASTG	2 cut(s)	523, 576
TseFI	GTSAC	2 cut(s)	344, 605
Tsp45I	GTSAC	2 cut(s)	344, 605
TspDTI	ATGAA	3 cut(s)	19, 145, 209
TspGWI	ACGGA	1 cut(s)	345
TspRI	CASTG	2 cut(s)	523, 576
Van91I	CCANNNNNTGG	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XspI	CTAG	3 cut(s)	171, 186, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.