Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Forward (+)

24560309 .. 24562527

Gene Structure 2219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G61030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCTTTTTTGAGTAAATTCGGGAACATATTGAAGCAGACCACAAACAAGCAACTCAATGCTCAGGTTTCTTTATCAAGCCCTTCGCTTTTTCAAGCAATAAGGTGTATGTCATCTTCTAAGCTCTTTATTGGAGGTATGGCTTATAGCATGGATGAGGATAGCTTAAGAGAAGCTTTCACCAAATACGGTGAAGTTGTCGATACTAGAGTTATTTTGGATCGTGAAACTGGTAGGTCAAGGGGATTTGGATTTGTTACATTCACCTCTTCAGAAGCGGCATCTAGTGCTATCCAGGCTTTGGATGGCCGGGATCTCCATGGCCGGGTTGTTAAAGTAAACTATGCAAATGATAGAACAAGTGGTGGTGGTTTTGGAGGTGGTGGCTATGGAGGCGGTGGTGGTGGTTATGGTGGTAGTGGTGGCTACGGAGGAGGTGCTGGTGGCTACGGAGGAAGTGGTGGCTATGGAGGCGGTGCTGGTGGCTACGGAGGTAATTCTGGTGGTGGCTACGGAGGTAATGCTGCTGGTGGATATGGAGGCAGTGGTGCTGGTGGCTATGGAGGCGATGCTACTGGTCACGGAGGTGCTGGTGGAGGTTATGGTTCAAGCGGTGGCTTTGGATCTAGCGGCAACACTTATGGGGAGGGTTCAAGTGCAAGCGCAGGTGCTGTTGGTGACTATAATGGAAGTAGTGGTTATGGTAGCGCCAATACTTATGGTAGCAGCAATGGTGGATTCGCTGGAGACAGCCAGTTTGGAGGAAGCCCTGTTGGCAACAGCTCTCAGTTCGGTGGTGACAATACCCAGTTTACTGCTGGTGGCCAATTTGGCGGTGAGGATCAATTTGGAAGCATGGAGAAAAGTGAAACGAAGATGGAAGATGGACCAATAGGTGGAGAATTCGAAGATGTTGCCAAAAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

309

Amino Acids

29.98

Weight (kDa)

4.87

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	42 - 112	9.7e-22	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	656
Acc36I	ACCTGC	1 cut(s)	656
AccB7I	CCANNNNNTGG	2 cut(s)	301, 896
AciI	CCGC	6 cut(s)	278, 396, 474, 612, 630, 834
AclWI	GGATC	4 cut(s)	228, 321, 631, 849
AcoI	YGGCCR	3 cut(s)	307, 322, 823
AcsI	RAATTY	2 cut(s)	17, 902
AcuI	CTGAAG	1 cut(s)	255
AfiI	CCNNNNNNNGG	3 cut(s)	301, 325, 896
AflII	CTTAAG	1 cut(s)	166
AgsI	TTSAA	4 cut(s)	34, 95, 609, 654
AjnI	CCWGG	1 cut(s)	294
AleI	CACNNNNGTG	1 cut(s)	585
AluBI	AGCT	5 cut(s)	124, 165, 176, 783, 926
AluI	AGCT	5 cut(s)	124, 165, 176, 783, 926
Alw26I	GTCTC	1 cut(s)	741
AlwI	GGATC	4 cut(s)	228, 321, 631, 849
AlwNI	CAGNNNCTG	1 cut(s)	671
AoxI	GGCC	3 cut(s)	307, 322, 823
ApeKI	GCWGC	2 cut(s)	524, 726
ApoI	RAATTY	2 cut(s)	17, 902
ArsI	GACNNNNNNTTYG	2 cut(s)	740, 772
AspLEI	GCGC	2 cut(s)	665, 710
AspS9I	GGNCC	1 cut(s)	887
AsuC2I	CCSGG	2 cut(s)	311, 326
AsuHPI	GGTGA	6 cut(s)	172, 203, 256, 689, 809, 848
AsuII	TTCGAA	1 cut(s)	906
AvaII	GGWCC	1 cut(s)	887
BaeI	ACNNNNGTAYC	2 cut(s)	195, 228
BalI	TGGCCA	1 cut(s)	825
BarI	GAAGNNNNNNTAC	2 cut(s)	100, 132
BbvI	GCAGC	2 cut(s)	511, 738
BccI	CCATC	3 cut(s)	299, 871, 878
BcgI	CGANNNNNNTGC	2 cut(s)	896, 930
BciT130I	CCWGG	1 cut(s)	296
BcnI	CCSGG	2 cut(s)	311, 326
BcoDI	GTCTC	1 cut(s)	741
BfaI	CTAG	3 cut(s)	207, 285, 627
BfoI	RGCGCY	1 cut(s)	711
BfrI	CTTAAG	1 cut(s)	166
BfuAI	ACCTGC	1 cut(s)	656
BglI	GCCNNNNNGGC	2 cut(s)	774, 831
BisI	GCNGC	4 cut(s)	279, 525, 631, 727
BlsI	GCNGC	4 cut(s)	280, 526, 632, 728
Bme1390I	CCNGG	3 cut(s)	296, 311, 326
Bme18I	GGWCC	1 cut(s)	887
BmgT120I	GGNCC	1 cut(s)	887
BmrFI	CCNGG	3 cut(s)	296, 311, 326
BmrI	ACTGGG	1 cut(s)	802
BmsI	GCATC	2 cut(s)	290, 559
BmuI	ACTGGG	1 cut(s)	802
BpmI	CTGGAG	1 cut(s)	765
Bpu10I	CCTNAGC	1 cut(s)	63
Bpu14I	TTCGAA	1 cut(s)	906
BpuMI	CCSGG	2 cut(s)	311, 326
BsaJI	CCNNGG	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	3 cut(s)	301, 325, 896
Bse1I	ACTGG	4 cut(s)	235, 580, 754, 808
Bse3DI	GCAATG	1 cut(s)	736
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	2 cut(s)	160, 310
BseLI	CCNNNNNNNGG	3 cut(s)	301, 325, 896
BseMI	GCAATG	1 cut(s)	736
BseMII	CTCAG	2 cut(s)	77, 800
BseNI	ACTGG	4 cut(s)	235, 580, 754, 808
BseRI	GAGGAG	1 cut(s)	447
BseXI	GCAGC	2 cut(s)	511, 738
BshFI	GGCC	3 cut(s)	309, 324, 825
BsiSI	CCGG	2 cut(s)	310, 325
BslI	CCNNNNNNNGG	3 cut(s)	301, 325, 896
BsmAI	GTCTC	1 cut(s)	741
BsnI	GGCC	3 cut(s)	309, 324, 825
Bsp119I	TTCGAA	1 cut(s)	906
Bsp143I	GATC	4 cut(s)	220, 313, 623, 841
Bsp19I	CCATGG	1 cut(s)	319
BspACI	CCGC	6 cut(s)	278, 396, 474, 612, 630, 834
BspANI	GGCC	3 cut(s)	309, 324, 825
BspCNI	CTCAG	2 cut(s)	76, 799
BspMI	ACCTGC	1 cut(s)	656
BspPI	GGATC	4 cut(s)	228, 321, 631, 849
BspT104I	TTCGAA	1 cut(s)	906
BspTI	CTTAAG	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	736
BsrI	ACTGG	4 cut(s)	235, 580, 754, 808
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	4 cut(s)	220, 313, 623, 841
BssT1I	CCWWGG	1 cut(s)	319
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	274
BstAFI	CTTAAG	1 cut(s)	166
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstBI	TTCGAA	1 cut(s)	906
BstC8I	GCNNGC	1 cut(s)	661
BstDEI	CTNAG	3 cut(s)	63, 120, 786
BstDSI	CCRYGG	1 cut(s)	319
BstF5I	GGATG	2 cut(s)	160, 310
BstH2I	RGCGCY	1 cut(s)	711
BstHHI	GCGC	2 cut(s)	665, 710
BstKTI	GATC	4 cut(s)	223, 316, 626, 844
BstMAI	GTCTC	1 cut(s)	741
BstMBI	GATC	4 cut(s)	220, 313, 623, 841
BstMWI	GCNNNNNNNGC	8 cut(s)	287, 296, 393, 471, 564, 774, 831, 923
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	3 cut(s)	294, 309, 324
BstV1I	GCAGC	2 cut(s)	511, 738
BstX2I	RGATCY	2 cut(s)	313, 623
BstYI	RGATCY	2 cut(s)	313, 623
BsuRI	GGCC	3 cut(s)	309, 324, 825
BtgI	CCRYGG	1 cut(s)	319
BtgZI	GCGATG	1 cut(s)	582
BtsCI	GGATG	2 cut(s)	160, 310
BtsI	GCAGTG	1 cut(s)	550
BtsIMutI	CAGTG	1 cut(s)	550
BveI	ACCTGC	1 cut(s)	656
Cac8I	GCNNGC	1 cut(s)	661
CaiI	CAGNNNCTG	1 cut(s)	671
CfoI	GCGC	2 cut(s)	665, 710
Cfr13I	GGNCC	1 cut(s)	887
CviAII	CATG	3 cut(s)	151, 320, 856
DdeI	CTNAG	3 cut(s)	63, 120, 786
DpnI	GATC	4 cut(s)	222, 315, 625, 843
DpnII	GATC	4 cut(s)	220, 313, 623, 841
EaeI	YGGCCR	3 cut(s)	307, 322, 823
Eam1104I	CTCTTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	887
Eco57I	CTGAAG	1 cut(s)	255
EcoRI	GAATTC	1 cut(s)	902
EcoRII	CCWGG	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	3 cut(s)	154, 323, 859
FalI	AAGNNNNNCTT	2 cut(s)	160, 192
FatI	CATG	3 cut(s)	150, 319, 855
Fnu4HI	GCNGC	4 cut(s)	279, 525, 631, 727
FokI	GGATG	2 cut(s)	167, 317
Fsp4HI	GCNGC	4 cut(s)	279, 525, 631, 727
FspBI	CTAG	3 cut(s)	207, 285, 627
GlaI	GCGC	2 cut(s)	664, 709
GluI	GCNGC	4 cut(s)	279, 525, 631, 727
GsuI	CTGGAG	1 cut(s)	765
HaeII	RGCGCY	1 cut(s)	711
HaeIII	GGCC	3 cut(s)	309, 324, 825
HapII	CCGG	2 cut(s)	310, 325
HhaI	GCGC	2 cut(s)	665, 710
Hin1II	CATG	3 cut(s)	154, 323, 859
Hin6I	GCGC	2 cut(s)	663, 708
HinP1I	GCGC	2 cut(s)	663, 708
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	1 cut(s)	738
HpaII	CCGG	2 cut(s)	310, 325
HphI	GGTGA	6 cut(s)	172, 203, 256, 689, 809, 848
Hpy166II	GTNNAC	2 cut(s)	340, 813
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	2 cut(s)	22, 224
Hpy8I	GTNNAC	2 cut(s)	340, 813
HpyAV	CCTTC	1 cut(s)	93
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4V	TGCA	2 cut(s)	347, 659
HpyF10VI	GCNNNNNNNGC	8 cut(s)	287, 296, 393, 471, 564, 774, 831, 923
HpyF3I	CTNAG	3 cut(s)	63, 120, 786
Hsp92II	CATG	3 cut(s)	154, 323, 859
HspAI	GCGC	2 cut(s)	663, 708
Kzo9I	GATC	4 cut(s)	220, 313, 623, 841
Lsp1109I	GCAGC	2 cut(s)	511, 738
LweI	GCATC	2 cut(s)	290, 559
MaeI	CTAG	3 cut(s)	207, 285, 627
MaeIII	GTNAC	4 cut(s)	256, 578, 677, 797
MalI	GATC	4 cut(s)	222, 315, 625, 843
MboI	GATC	4 cut(s)	220, 313, 623, 841
MboII	GAAGA	5 cut(s)	108, 261, 886, 893, 920
MflI	RGATCY	2 cut(s)	313, 623
MlsI	TGGCCA	1 cut(s)	825
MluCI	AATT	5 cut(s)	17, 496, 827, 845, 902
MluNI	TGGCCA	1 cut(s)	825
Mox20I	TGGCCA	1 cut(s)	825
MscI	TGGCCA	1 cut(s)	825
MseI	TTAA	2 cut(s)	167, 333
MslI	CAYNNNNRTG	1 cut(s)	585
Msp20I	TGGCCA	1 cut(s)	825
MspCI	CTTAAG	1 cut(s)	166
MspI	CCGG	2 cut(s)	310, 325
MspR9I	CCNGG	3 cut(s)	296, 311, 326
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	8 cut(s)	287, 296, 393, 471, 564, 774, 831, 923
NciI	CCSGG	2 cut(s)	311, 326
NcoI	CCATGG	1 cut(s)	319
NdeII	GATC	4 cut(s)	220, 313, 623, 841
NlaIII	CATG	3 cut(s)	154, 323, 859
NmuCI	GTSAC	3 cut(s)	578, 677, 797
NspV	TTCGAA	1 cut(s)	906
OliI	CACNNNNGTG	1 cut(s)	585
PaqCI	CACCTGC	1 cut(s)	656
PfeI	GAWTC	1 cut(s)	738
PflMI	CCANNNNNTGG	2 cut(s)	301, 896
PkrI	GCNGC	4 cut(s)	280, 526, 632, 728
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	887
PstNI	CAGNNNCTG	1 cut(s)	671
PsuI	RGATCY	2 cut(s)	313, 623
RseI	CAYNNNNRTG	1 cut(s)	585
SaqAI	TTAA	2 cut(s)	167, 333
SatI	GCNGC	4 cut(s)	279, 525, 631, 727
Sau3AI	GATC	4 cut(s)	220, 313, 623, 841
Sau96I	GGNCC	1 cut(s)	887
ScrFI	CCNGG	3 cut(s)	296, 311, 326
SfaNI	GCATC	2 cut(s)	290, 559
SfuI	TTCGAA	1 cut(s)	906
SinI	GGWCC	1 cut(s)	887
SmiMI	CAYNNNNRTG	1 cut(s)	585
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	5 cut(s)	17, 496, 827, 845, 902
SsiI	CCGC	6 cut(s)	278, 396, 474, 612, 630, 834
SspMI	CTAG	3 cut(s)	207, 285, 627
StyD4I	CCNGG	3 cut(s)	294, 309, 324
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	191
TaqI	TCGA	2 cut(s)	201, 906
TasI	AATT	5 cut(s)	17, 496, 827, 845, 902
TauI	GCSGC	2 cut(s)	281, 633
TfiI	GAWTC	1 cut(s)	738
Tru1I	TTAA	2 cut(s)	167, 333
Tru9I	TTAA	2 cut(s)	167, 333
TscAI	CASTG	1 cut(s)	550
TseFI	GTSAC	3 cut(s)	578, 677, 797
TseI	GCWGC	2 cut(s)	524, 726
Tsp45I	GTSAC	3 cut(s)	578, 677, 797
TspGWI	ACGGA	5 cut(s)	444, 465, 504, 528, 597
TspRI	CASTG	1 cut(s)	550
Van91I	CCANNNNNTGG	2 cut(s)	301, 896
Vha464I	CTTAAG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	887
XapI	RAATTY	2 cut(s)	17, 902
XcmI	CCANNNNNNNNNTGG	2 cut(s)	302, 815
XspI	CTAG	3 cut(s)	207, 285, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.