Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Forward (+)

63268758 .. 63273417

Gene Structure 4660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00270730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGGGTGGTATTTTAAGTGGGGCCCCCTCTATATAGTGATGACAAAACATAGGCGCTTTTTAGTGTTTCGTCAATTGAGGTCATGGTGGTGGTCTTGTGCACCAGAAATTTTGCACTACGAGCATAATGGTGATTACAAACTTTGGTTGGTAGGTTTATCATGGGTAACTGCGATGGCTTTCTTGAGTAAATTTGGGAATATACTTCGGCAGTCTGCAGGCAAGCAGATCAACTCTGACTTGTCTTCTTTCAAACTGTGGACCCATCAGGCTGTAAGATGCATGTCATCCATGGGAAGCTCAAAGCTTTTTATCGGAGGTATTTCATATCAGACGGATGATGGCAGTCTGAGGGAGGCTTTTGCAAGATATGGAGATGTTGTTGATGCACGGATCATCACAGACCGCGAGAGTGGTAGATCAAGAGGATTTGGATTTGTTACTTACGCTACACCTGAGGGTGCATCAAGTGCCATTCAGGCCTTGGATGGGAAGGATCTTCATGGCCGTGTAATAAGGGTGAATTATGCAAATGAGAGGCCTCCTCGTAGTAGCTTTGGTTATGGAGGAGGTGATGGCGGTTACGGGGGTGGTGGAGGCGGTTACGGTGGTGGCGGAGGTGGTTACAGTGGTGGTGGAGGCGGTTACGGTGGTGGCGGAGGCGGTTACGGTGGCAGAGGCGGAGGTGGGGGTTACAGTGGTGGTGGAGGCGGCTACAACAGCTATGGCAATGACAGTTATAATAGTGGTGGTAATTACGGAAGTGGAAACTCTTTTGAAACTGCTAGCGGTGGAGGTTATGGCAATAGCACAAATTTTGCTCCTTCTGGTAGTGCCGATAACTTTGGAGTTGGTGGTGGTGACAGCAGCTTTCCCACTGGTGGAGGTTTTGGCGATAGCCCAAATTATGGTTCTCCTGGTAGTGCTGGAACTGGTGGTGCCGATAACTTTGGTGTTGGTGGCAGTGATGACAGTAGCTTTCCCAACAGGGACGATGAGTTAGGCTATCAGAGTAGGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

340

Amino Acids

35.13

Weight (kDa)

6.96

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	103 - 173	8.2e-21	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	741
AccB1I	GGYRCC	1 cut(s)	938
AccB7I	CCANNNNNTGG	1 cut(s)	908
AccII	CGCG	1 cut(s)	408
AclWI	GGATC	2 cut(s)	401, 504
AcoI	YGGCCR	1 cut(s)	505
AcsI	RAATTY	3 cut(s)	108, 191, 814
AfiI	CCNNNNNNNGG	3 cut(s)	489, 881, 908
AgsI	TTSAA	2 cut(s)	253, 779
AjnI	CCWGG	1 cut(s)	916
AjuI	GAANNNNNNNTTGG	2 cut(s)	895, 927
AluBI	AGCT	6 cut(s)	300, 307, 555, 723, 870, 978
AluI	AGCT	6 cut(s)	300, 307, 555, 723, 870, 978
Alw21I	GWGCWC	1 cut(s)	103
Alw44I	GTGCAC	1 cut(s)	99
AlwI	GGATC	2 cut(s)	401, 504
AoxI	GGCC	5 cut(s)	22, 480, 505, 539, 1017
ApaI	GGGCCC	1 cut(s)	26
ApaLI	GTGCAC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	867
ApoI	RAATTY	3 cut(s)	108, 191, 814
AspLEI	GCGC	1 cut(s)	57
AspS9I	GGNCC	4 cut(s)	22, 23, 261, 1017
AsuHPI	GGTGA	4 cut(s)	143, 532, 584, 872
AsuNHI	GCTAGC	1 cut(s)	785
AvaII	GGWCC	1 cut(s)	261
AxyI	CCTNAGG	1 cut(s)	456
BaeGI	GKGCMC	2 cut(s)	26, 103
BanI	GGYRCC	1 cut(s)	938
BanII	GRGCYC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	879
BccI	CCATC	5 cut(s)	169, 273, 335, 482, 569
BceAI	ACGGC	1 cut(s)	492
BciT130I	CCWGG	1 cut(s)	918
BfaI	CTAG	1 cut(s)	786
BfmI	CTRYAG	1 cut(s)	216
BfoI	RGCGCY	1 cut(s)	58
BglI	GCCNNNNNGGC	1 cut(s)	479
BisI	GCNGC	2 cut(s)	712, 868
BlsI	GCNGC	2 cut(s)	713, 869
Bme1390I	CCNGG	1 cut(s)	918
Bme18I	GGWCC	1 cut(s)	261
BmgT120I	GGNCC	4 cut(s)	22, 23, 261, 1017
BmiI	GGNNCC	5 cut(s)	23, 24, 25, 263, 940
BmrFI	CCNGG	1 cut(s)	918
BmsI	GCATC	3 cut(s)	269, 376, 473
BmtI	GCTAGC	1 cut(s)	789
BpiI	GAAGAC	1 cut(s)	237
BplI	GAGNNNNNCTC	2 cut(s)	529, 561
BpuEI	CTTGAG	1 cut(s)	205
BsaJI	CCNNGG	2 cut(s)	291, 483
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	3 cut(s)	489, 881, 908
Bse1I	ACTGG	2 cut(s)	883, 937
Bse21I	CCTNAGG	1 cut(s)	456
Bse3DI	GCAATG	1 cut(s)	736
BseBI	CCWGG	1 cut(s)	918
BseDI	CCNNGG	2 cut(s)	291, 483
BseGI	GGATG	3 cut(s)	287, 343, 493
BseLI	CCNNNNNNNGG	3 cut(s)	489, 881, 908
BseMI	GCAATG	1 cut(s)	736
BseMII	CTCAG	2 cut(s)	341, 447
BseNI	ACTGG	2 cut(s)	883, 937
BseRI	GAGGAG	2 cut(s)	534, 582
BseSI	GKGCMC	2 cut(s)	26, 103
BseXI	GCAGC	1 cut(s)	879
Bsh1236I	CGCG	1 cut(s)	408
BshFI	GGCC	5 cut(s)	24, 482, 507, 541, 1019
BshNI	GGYRCC	1 cut(s)	938
BsiHKAI	GWGCWC	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	1004
BslI	CCNNNNNNNGG	3 cut(s)	489, 881, 908
BsmFI	GGGAC	1 cut(s)	1004
BsnI	GGCC	5 cut(s)	24, 482, 507, 541, 1019
Bsp120I	GGGCCC	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	26, 103
Bsp143I	GATC	4 cut(s)	228, 393, 419, 496
Bsp19I	CCATGG	1 cut(s)	291
BspANI	GGCC	5 cut(s)	24, 482, 507, 541, 1019
BspCNI	CTCAG	2 cut(s)	342, 448
BspFNI	CGCG	1 cut(s)	408
BspLI	GGNNCC	5 cut(s)	23, 24, 25, 263, 940
BspMAI	CTGCAG	1 cut(s)	220
BspOI	GCTAGC	1 cut(s)	789
BspPI	GGATC	2 cut(s)	401, 504
BspT107I	GGYRCC	1 cut(s)	938
BsrDI	GCAATG	1 cut(s)	736
BsrI	ACTGG	2 cut(s)	883, 937
BssECI	CCNNGG	2 cut(s)	291, 483
BssMI	GATC	4 cut(s)	228, 393, 419, 496
BssT1I	CCWWGG	2 cut(s)	291, 483
Bst2UI	CCWGG	1 cut(s)	918
Bst4CI	ACNGT	8 cut(s)	258, 608, 629, 650, 671, 698, 737, 974
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstC8I	GCNNGC	3 cut(s)	220, 224, 787
BstDEI	CTNAG	2 cut(s)	350, 456
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	3 cut(s)	287, 343, 493
BstFNI	CGCG	1 cut(s)	408
BstH2I	RGCGCY	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	57
BstKTI	GATC	4 cut(s)	231, 396, 422, 499
BstMBI	GATC	4 cut(s)	228, 393, 419, 496
BstMWI	GCNNNNNNNGC	4 cut(s)	121, 470, 479, 720
BstNI	CCWGG	1 cut(s)	918
BstNSI	RCATGY	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	916
BstSFI	CTRYAG	1 cut(s)	216
BstSLI	GKGCMC	2 cut(s)	26, 103
BstUI	CGCG	1 cut(s)	408
BstV1I	GCAGC	1 cut(s)	879
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
Bsu36I	CCTNAGG	1 cut(s)	456
BsuRI	GGCC	5 cut(s)	24, 482, 507, 541, 1019
BtgI	CCRYGG	1 cut(s)	291
BtgZI	GCGATG	1 cut(s)	188
BtsCI	GGATG	3 cut(s)	287, 343, 493
BtsI	GCAGTG	1 cut(s)	970
BtsIMutI	CAGTG	4 cut(s)	634, 703, 876, 970
Cac8I	GCNNGC	3 cut(s)	220, 224, 787
CfoI	GCGC	1 cut(s)	57
Cfr13I	GGNCC	4 cut(s)	22, 23, 261, 1017
CviAII	CATG	5 cut(s)	84, 162, 283, 292, 503
DdeI	CTNAG	2 cut(s)	350, 456
DpnI	GATC	4 cut(s)	230, 395, 421, 498
DpnII	GATC	4 cut(s)	228, 393, 419, 496
EaeI	YGGCCR	1 cut(s)	505
EciI	GGCGGA	3 cut(s)	630, 672, 696
Eco130I	CCWWGG	2 cut(s)	291, 483
Eco147I	AGGCCT	2 cut(s)	482, 541
Eco24I	GRGCYC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	261
Eco81I	CCTNAGG	1 cut(s)	456
EcoO109I	RGGNCCY	3 cut(s)	22, 23, 1017
EcoRII	CCWGG	1 cut(s)	916
EcoT14I	CCWWGG	2 cut(s)	291, 483
EcoT22I	ATGCAT	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	26
ErhI	CCWWGG	2 cut(s)	291, 483
FaeI	CATG	5 cut(s)	87, 165, 286, 295, 506
FaqI	GGGAC	1 cut(s)	1004
FatI	CATG	5 cut(s)	83, 161, 282, 291, 502
Fnu4HI	GCNGC	2 cut(s)	712, 868
FokI	GGATG	3 cut(s)	274, 350, 500
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	2 cut(s)	712, 868
FspBI	CTAG	1 cut(s)	786
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	2 cut(s)	712, 868
HaeII	RGCGCY	1 cut(s)	58
HaeIII	GGCC	5 cut(s)	24, 482, 507, 541, 1019
HhaI	GCGC	1 cut(s)	57
Hin1II	CATG	5 cut(s)	87, 165, 286, 295, 506
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HindIII	AAGCTT	1 cut(s)	305
HphI	GGTGA	4 cut(s)	143, 532, 584, 872
Hpy166II	GTNNAC	2 cut(s)	101, 261
Hpy188I	TCNGA	5 cut(s)	238, 317, 333, 351, 1011
Hpy188III	TCNNGA	2 cut(s)	184, 423
Hpy8I	GTNNAC	2 cut(s)	101, 261
HpyAV	CCTTC	2 cut(s)	487, 834
HpyCH4III	ACNGT	8 cut(s)	258, 608, 629, 650, 671, 698, 737, 974
HpyCH4V	TGCA	8 cut(s)	101, 115, 218, 282, 365, 389, 464, 530
HpyF10VI	GCNNNNNNNGC	4 cut(s)	121, 470, 479, 720
HpyF3I	CTNAG	2 cut(s)	350, 456
Hsp92II	CATG	5 cut(s)	87, 165, 286, 295, 506
HspAI	GCGC	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	228, 393, 419, 496
LmnI	GCTCC	1 cut(s)	826
Lsp1109I	GCAGC	1 cut(s)	879
LweI	GCATC	3 cut(s)	269, 376, 473
MaeI	CTAG	1 cut(s)	786
MaeIII	GTNAC	9 cut(s)	166, 439, 581, 602, 623, 644, 665, 692, 860
MalI	GATC	4 cut(s)	230, 395, 421, 498
MboI	GATC	4 cut(s)	228, 393, 419, 496
MboII	GAAGA	2 cut(s)	237, 491
MfeI	CAATTG	1 cut(s)	74
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	2 cut(s)	26, 103
MluCI	AATT	7 cut(s)	74, 108, 191, 523, 754, 814, 904
Mph1103I	ATGCAT	1 cut(s)	284
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	3 cut(s)	88, 129, 507
MspR9I	CCNGG	1 cut(s)	918
MunI	CAATTG	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	918
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	4 cut(s)	121, 470, 479, 720
NcoI	CCATGG	1 cut(s)	291
NdeII	GATC	4 cut(s)	228, 393, 419, 496
NheI	GCTAGC	1 cut(s)	785
NlaIII	CATG	5 cut(s)	87, 165, 286, 295, 506
NlaIV	GGNNCC	5 cut(s)	23, 24, 25, 263, 940
NmuCI	GTSAC	1 cut(s)	860
NsiI	ATGCAT	1 cut(s)	284
NspI	RCATGY	1 cut(s)	286
PceI	AGGCCT	2 cut(s)	482, 541
PflMI	CCANNNNNTGG	1 cut(s)	908
PkrI	GCNGC	2 cut(s)	713, 869
PsiI	TTATAA	1 cut(s)	741
Psp6I	CCWGG	1 cut(s)	916
PspGI	CCWGG	1 cut(s)	916
PspN4I	GGNNCC	5 cut(s)	23, 24, 25, 263, 940
PspOMI	GGGCCC	1 cut(s)	22
PspPI	GGNCC	4 cut(s)	22, 23, 261, 1017
PstI	CTGCAG	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	496
RseI	CAYNNNNRTG	3 cut(s)	88, 129, 507
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	2 cut(s)	712, 868
Sau3AI	GATC	4 cut(s)	228, 393, 419, 496
Sau96I	GGNCC	4 cut(s)	22, 23, 261, 1017
ScrFI	CCNGG	1 cut(s)	918
SduI	GDGCHC	2 cut(s)	26, 103
SfaNI	GCATC	3 cut(s)	269, 376, 473
SfcI	CTRYAG	1 cut(s)	216
SinI	GGWCC	1 cut(s)	261
SmiMI	CAYNNNNRTG	3 cut(s)	88, 129, 507
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse9I	AATT	7 cut(s)	74, 108, 191, 523, 754, 814, 904
SseBI	AGGCCT	2 cut(s)	482, 541
SspMI	CTAG	1 cut(s)	786
StuI	AGGCCT	2 cut(s)	482, 541
StyD4I	CCNGG	1 cut(s)	916
StyI	CCWWGG	2 cut(s)	291, 483
TaaI	ACNGT	8 cut(s)	258, 608, 629, 650, 671, 698, 737, 974
TasI	AATT	7 cut(s)	74, 108, 191, 523, 754, 814, 904
TauI	GCSGC	1 cut(s)	714
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	4 cut(s)	634, 703, 883, 970
TseFI	GTSAC	1 cut(s)	860
TseI	GCWGC	1 cut(s)	867
Tsp45I	GTSAC	1 cut(s)	860
TspDTI	ATGAA	2 cut(s)	315, 491
TspGWI	ACGGA	3 cut(s)	350, 406, 774
TspRI	CASTG	4 cut(s)	634, 703, 883, 970
Van91I	CCANNNNNTGG	1 cut(s)	908
VneI	GTGCAC	1 cut(s)	99
VpaK11BI	GGWCC	1 cut(s)	261
XapI	RAATTY	3 cut(s)	108, 191, 814
XceI	RCATGY	1 cut(s)	286
XcmI	CCANNNNNNNNNTGG	1 cut(s)	481
XspI	CTAG	1 cut(s)	786
Zsp2I	ATGCAT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.