Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Reverse (-)

4142340 .. 4145099

Gene Structure 2760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16337

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCTTTCTTGAGTAAATTTGGGAATATACTTCGGCAGTCTGCAGGCAAGCAGATCAACTCTGACTTGTCTTCTTTCAAACTGTGGACCCATCAGGCTGTAAGATGCATGTCATCCATGGGAGGCTCAAAGCTTTTTATCGGAGGTATTTCGTATCAGACGGATGATGGCAGTCTGAGGGAGGCTTTTGCAAGATATGGAGATGTTGTTGATGCACGGATCATCACAGACCGTGAGAGTGGTAGATCAAGAGGATTTGGATTTGTTACTTACGCTACACCTGAGGGTGCATCAAGTGCCATTCAGGCCTTGGATGGAAAGGATCTTCATGGCCGTGTAATAAGGGTGAATTATGCCAATGAGAGGCCTCCTCGTAGTAGCTTTGGTTATGGAGGAGGTGATGGTGGTTACGGGGGTGGCGGAGGCAGTTACGGTGGTGGCGGAGGTGGTTACAGTGGTGGTGGAGGCGGTTACGGTGGCAGAGGCGGAGGTGGCTACAACAGCTATGGCAATGACAGTTATAATAGTGGTGGTAATTATGGAAGTGGAAACTCTTTTGAAACTGCTAGTGGTGGAGGTTATGGCAATAGCACAAATTTTGCTCCTTCTGGTAGTGTTGCTACTGGTAGTGCCGATAACTTTGGAGTTGGTGGTGGTGACAGCAGCTTTCCCACCGGTGGAGGTTTTGGCGATAGCCCAAATTATGGTTCTCCTGGTAGTGTTGGAACTGGTGGTGCTGATAACTTTGGTGTTGGTGGCAGTGATGACAGTAGCTTTCCCAACAGGGACGATGAGTTAGGCTATCAGAGTAGGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

272

Amino Acids

27.23

Weight (kDa)

5.16

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	45 - 115	5.5e-21	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	522
AccB7I	CCANNNNNTGG	1 cut(s)	704
AciI	CCGC	4 cut(s)	420, 441, 468, 486
AclWI	GGATC	2 cut(s)	227, 330
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	2 cut(s)	17, 595
AfiI	CCNNNNNNNGG	3 cut(s)	363, 677, 704
AgeI	ACCGGT	1 cut(s)	674
AgsI	TTSAA	2 cut(s)	79, 560
AjnI	CCWGG	1 cut(s)	712
AjuI	GAANNNNNNNTTGG	2 cut(s)	691, 723
AluBI	AGCT	5 cut(s)	133, 381, 504, 666, 774
AluI	AGCT	5 cut(s)	133, 381, 504, 666, 774
AlwI	GGATC	2 cut(s)	227, 330
AoxI	GGCC	4 cut(s)	306, 331, 365, 813
ApeKI	GCWGC	1 cut(s)	663
ApoI	RAATTY	2 cut(s)	17, 595
AsiGI	ACCGGT	1 cut(s)	674
AspS9I	GGNCC	2 cut(s)	87, 813
AsuHPI	GGTGA	3 cut(s)	358, 410, 668
AvaII	GGWCC	1 cut(s)	87
AxyI	CCTNAGG	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	675
BccI	CCATC	4 cut(s)	99, 161, 308, 395
BceAI	ACGGC	1 cut(s)	318
BciT130I	CCWGG	1 cut(s)	714
BfaI	CTAG	1 cut(s)	567
BfmI	CTRYAG	1 cut(s)	42
BglI	GCCNNNNNGGC	1 cut(s)	305
BisI	GCNGC	1 cut(s)	664
BlsI	GCNGC	1 cut(s)	665
Bme1390I	CCNGG	1 cut(s)	714
Bme18I	GGWCC	1 cut(s)	87
BmgT120I	GGNCC	2 cut(s)	87, 813
BmiI	GGNNCC	1 cut(s)	89
BmrFI	CCNGG	1 cut(s)	714
BmsI	GCATC	3 cut(s)	95, 202, 299
BpiI	GAAGAC	1 cut(s)	63
BplI	GAGNNNNNCTC	2 cut(s)	355, 387
BpuEI	CTTGAG	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	117, 309
BsaWI	WCCGGW	1 cut(s)	674
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	3 cut(s)	363, 677, 704
Bse118I	RCCGGY	1 cut(s)	674
Bse1I	ACTGG	2 cut(s)	628, 733
Bse21I	CCTNAGG	1 cut(s)	282
Bse3DI	GCAATG	1 cut(s)	517
BseBI	CCWGG	1 cut(s)	714
BseDI	CCNNGG	2 cut(s)	117, 309
BseGI	GGATG	3 cut(s)	113, 169, 319
BseLI	CCNNNNNNNGG	3 cut(s)	363, 677, 704
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	2 cut(s)	167, 273
BseNI	ACTGG	2 cut(s)	628, 733
BseRI	GAGGAG	2 cut(s)	360, 408
BseXI	GCAGC	1 cut(s)	675
BshFI	GGCC	4 cut(s)	308, 333, 367, 815
BshTI	ACCGGT	1 cut(s)	674
BsiSI	CCGG	1 cut(s)	675
BslFI	GGGAC	1 cut(s)	800
BslI	CCNNNNNNNGG	3 cut(s)	363, 677, 704
BsmFI	GGGAC	1 cut(s)	800
BsnI	GGCC	4 cut(s)	308, 333, 367, 815
Bsp143I	GATC	4 cut(s)	54, 219, 245, 322
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	4 cut(s)	420, 441, 468, 486
BspANI	GGCC	4 cut(s)	308, 333, 367, 815
BspCNI	CTCAG	2 cut(s)	168, 274
BspLI	GGNNCC	1 cut(s)	89
BspMAI	CTGCAG	1 cut(s)	46
BspPI	GGATC	2 cut(s)	227, 330
BsrDI	GCAATG	1 cut(s)	517
BsrFI	RCCGGY	1 cut(s)	674
BsrI	ACTGG	2 cut(s)	628, 733
BssAI	RCCGGY	1 cut(s)	674
BssECI	CCNNGG	2 cut(s)	117, 309
BssMI	GATC	4 cut(s)	54, 219, 245, 322
BssT1I	CCWWGG	2 cut(s)	117, 309
Bst2UI	CCWGG	1 cut(s)	714
Bst4CI	ACNGT	7 cut(s)	84, 233, 434, 455, 476, 518, 770
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	46, 50
BstDEI	CTNAG	2 cut(s)	176, 282
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	3 cut(s)	113, 169, 319
BstKTI	GATC	4 cut(s)	57, 222, 248, 325
BstMBI	GATC	4 cut(s)	54, 219, 245, 322
BstMWI	GCNNNNNNNGC	4 cut(s)	296, 305, 492, 501
BstNI	CCWGG	1 cut(s)	714
BstNSI	RCATGY	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	712
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	675
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
Bsu36I	CCTNAGG	1 cut(s)	282
BsuRI	GGCC	4 cut(s)	308, 333, 367, 815
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	3 cut(s)	113, 169, 319
BtsI	GCAGTG	1 cut(s)	766
BtsIMutI	CAGTG	2 cut(s)	460, 766
Cac8I	GCNNGC	2 cut(s)	46, 50
Cfr10I	RCCGGY	1 cut(s)	674
Cfr13I	GGNCC	2 cut(s)	87, 813
CspAI	ACCGGT	1 cut(s)	674
CviAII	CATG	3 cut(s)	109, 118, 329
DdeI	CTNAG	2 cut(s)	176, 282
DpnI	GATC	4 cut(s)	56, 221, 247, 324
DpnII	GATC	4 cut(s)	54, 219, 245, 322
EaeI	YGGCCR	1 cut(s)	331
EciI	GGCGGA	3 cut(s)	435, 456, 501
Eco130I	CCWWGG	2 cut(s)	117, 309
Eco147I	AGGCCT	2 cut(s)	308, 367
Eco47I	GGWCC	1 cut(s)	87
Eco81I	CCTNAGG	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	813
EcoRII	CCWGG	1 cut(s)	712
EcoT14I	CCWWGG	2 cut(s)	117, 309
EcoT22I	ATGCAT	1 cut(s)	110
ErhI	CCWWGG	2 cut(s)	117, 309
FaeI	CATG	3 cut(s)	112, 121, 332
FaqI	GGGAC	1 cut(s)	800
FatI	CATG	3 cut(s)	108, 117, 328
Fnu4HI	GCNGC	1 cut(s)	664
FokI	GGATG	3 cut(s)	100, 176, 326
Fsp4HI	GCNGC	1 cut(s)	664
FspBI	CTAG	1 cut(s)	567
GluI	GCNGC	1 cut(s)	664
HaeIII	GGCC	4 cut(s)	308, 333, 367, 815
HapII	CCGG	1 cut(s)	675
Hin1II	CATG	3 cut(s)	112, 121, 332
HindIII	AAGCTT	1 cut(s)	131
HpaII	CCGG	1 cut(s)	675
HphI	GGTGA	3 cut(s)	358, 410, 668
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	5 cut(s)	64, 143, 159, 177, 807
Hpy188III	TCNNGA	2 cut(s)	10, 249
Hpy8I	GTNNAC	1 cut(s)	87
HpyAV	CCTTC	1 cut(s)	615
HpyCH4III	ACNGT	7 cut(s)	84, 233, 434, 455, 476, 518, 770
HpyCH4V	TGCA	5 cut(s)	44, 108, 191, 215, 290
HpyF10VI	GCNNNNNNNGC	4 cut(s)	296, 305, 492, 501
HpyF3I	CTNAG	2 cut(s)	176, 282
Hsp92II	CATG	3 cut(s)	112, 121, 332
Kzo9I	GATC	4 cut(s)	54, 219, 245, 322
LmnI	GCTCC	1 cut(s)	607
Lsp1109I	GCAGC	1 cut(s)	675
LweI	GCATC	3 cut(s)	95, 202, 299
MaeI	CTAG	1 cut(s)	567
MaeIII	GTNAC	6 cut(s)	265, 407, 428, 449, 470, 656
MalI	GATC	4 cut(s)	56, 221, 247, 324
MboI	GATC	4 cut(s)	54, 219, 245, 322
MboII	GAAGA	2 cut(s)	63, 317
MflI	RGATCY	1 cut(s)	322
MluCI	AATT	5 cut(s)	17, 349, 535, 595, 700
MmeI	TCCRAC	1 cut(s)	703
Mph1103I	ATGCAT	1 cut(s)	110
MslI	CAYNNNNRTG	1 cut(s)	333
MspI	CCGG	1 cut(s)	675
MspR9I	CCNGG	1 cut(s)	714
MvaI	CCWGG	1 cut(s)	714
MwoI	GCNNNNNNNGC	4 cut(s)	296, 305, 492, 501
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	4 cut(s)	54, 219, 245, 322
NlaIII	CATG	3 cut(s)	112, 121, 332
NlaIV	GGNNCC	1 cut(s)	89
NmuCI	GTSAC	1 cut(s)	656
NsiI	ATGCAT	1 cut(s)	110
NspI	RCATGY	1 cut(s)	112
PceI	AGGCCT	2 cut(s)	308, 367
PflMI	CCANNNNNTGG	1 cut(s)	704
PinAI	ACCGGT	1 cut(s)	674
PkrI	GCNGC	1 cut(s)	665
PsiI	TTATAA	1 cut(s)	522
Psp6I	CCWGG	1 cut(s)	712
PspGI	CCWGG	1 cut(s)	712
PspN4I	GGNNCC	1 cut(s)	89
PspPI	GGNCC	2 cut(s)	87, 813
PstI	CTGCAG	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	333
SatI	GCNGC	1 cut(s)	664
Sau3AI	GATC	4 cut(s)	54, 219, 245, 322
Sau96I	GGNCC	2 cut(s)	87, 813
ScrFI	CCNGG	1 cut(s)	714
SfaNI	GCATC	3 cut(s)	95, 202, 299
SfcI	CTRYAG	1 cut(s)	42
SgrAI	CRCCGGYG	1 cut(s)	674
SinI	GGWCC	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	5 cut(s)	17, 349, 535, 595, 700
SseBI	AGGCCT	2 cut(s)	308, 367
SsiI	CCGC	4 cut(s)	420, 441, 468, 486
SspMI	CTAG	1 cut(s)	567
StuI	AGGCCT	2 cut(s)	308, 367
StyD4I	CCNGG	1 cut(s)	712
StyI	CCWWGG	2 cut(s)	117, 309
TaaI	ACNGT	7 cut(s)	84, 233, 434, 455, 476, 518, 770
TasI	AATT	5 cut(s)	17, 349, 535, 595, 700
TscAI	CASTG	2 cut(s)	460, 766
TseFI	GTSAC	1 cut(s)	656
TseI	GCWGC	1 cut(s)	663
Tsp45I	GTSAC	1 cut(s)	656
TspDTI	ATGAA	1 cut(s)	317
TspGWI	ACGGA	2 cut(s)	176, 232
TspRI	CASTG	2 cut(s)	460, 766
Van91I	CCANNNNNTGG	1 cut(s)	704
VpaK11BI	GGWCC	1 cut(s)	87
XapI	RAATTY	2 cut(s)	17, 595
XceI	RCATGY	1 cut(s)	112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	307
XspI	CTAG	1 cut(s)	567
Zsp2I	ATGCAT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.