Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Reverse (-)

3881928 .. 3884385

Gene Structure 2458 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG056200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCATATCATCAGGCTGCGATGGCGTTCTTGAGTAAATTTGGCAATATACTTAGGCAGACCGCAACCAGGCAGATCAGATCTGAATTGGCTCCTTCCAAGCCGTCGATTTTTCAGGCGATAAGATGCATGTCAACTGGGCCAAGTTCTAAACTATTTATTGGAGGTGTGTCATTTCAGAGTGATGAGCAAAGTTTGAGGGAAGAATTTGCCAAATATGGTGAAGTTGTTGATGTAAGAATCATCACAGACCGTGACACTGGTAGATCGAGAGGCTTTGGATTCGTTACTTACACATCTAGCGAGGAGGCATCAAGTGCCATCCAGGCCTTGGATGGTCAGGAGCTTCATGGCCGCCGCGTAAGGGTGAATTATGCTACTGATAGGCCTCGGACTAACTTTGGAGGAGGTGGTTATGGTGGTGATGGTGGTTACCCGAGAGGTGGTGGAGGATATGGTGGTGGTGGTGGTGGTTATGGAGGTGGCGGTTATGGAGGTGGCAGCTACGGTTCTGGGAACTCTGGTGGTGGATACGGTGGAAGTGGAGTTGGCTACAACAGTGGGGGCACTTTTGATAATGCTAGCACTGGTGGTTTTGGTGGTACTGACAACAGCTTTTCCACTGGTGGAGCTCAATTTGGAGAGGACAAAAGTGGCTTCGATGAGCCATTAGAAGGAAACAATAGGGATGATGATGACACTGCAGACTTCGAAAAAAGGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

241

Amino Acids

24.92

Weight (kDa)

5.14

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	52 - 122	7.5e-22	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	331
AccII	CGCG	1 cut(s)	360
AciI	CCGC	4 cut(s)	63, 355, 358, 486
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	2 cut(s)	38, 206
AfaI	GTAC	1 cut(s)	604
AfiI	CCNNNNNNNGG	5 cut(s)	69, 331, 364, 443, 674
AjnI	CCWGG	2 cut(s)	68, 324
AluBI	AGCT	4 cut(s)	346, 504, 615, 632
AluI	AGCT	4 cut(s)	346, 504, 615, 632
Alw21I	GWGCWC	1 cut(s)	634
Ama87I	CYCGRG	1 cut(s)	436
AoxI	GGCC	5 cut(s)	140, 327, 352, 386, 720
ApeKI	GCWGC	2 cut(s)	17, 501
ApoI	RAATTY	2 cut(s)	38, 206
AspS9I	GGNCC	2 cut(s)	140, 720
AsuHPI	GGTGA	3 cut(s)	233, 379, 434
AsuII	TTCGAA	1 cut(s)	711
AsuNHI	GCTAGC	1 cut(s)	581
AvaI	CYCGRG	1 cut(s)	436
BaeGI	GKGCMC	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	634
Bbv12I	GWGCWC	1 cut(s)	634
BbvI	GCAGC	2 cut(s)	4, 513
BccI	CCATC	4 cut(s)	16, 329, 329, 419
BceAI	ACGGC	1 cut(s)	88
BciT130I	CCWGG	2 cut(s)	70, 326
BciVI	GTATCC	1 cut(s)	524
BfaI	CTAG	2 cut(s)	300, 582
BfmI	CTRYAG	1 cut(s)	702
BfuI	GTATCC	1 cut(s)	524
BglI	GCCNNNNNGGC	1 cut(s)	326
BglII	AGATCT	1 cut(s)	80
BisI	GCNGC	4 cut(s)	18, 355, 358, 502
BlsI	GCNGC	4 cut(s)	19, 356, 359, 503
Bme1390I	CCNGG	2 cut(s)	70, 326
BmeT110I	CYCGRG	1 cut(s)	436
BmgT120I	GGNCC	2 cut(s)	140, 720
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	2 cut(s)	70, 326
BmrI	ACTGGG	1 cut(s)	147
BmsI	GCATC	2 cut(s)	116, 320
BmtI	GCTAGC	1 cut(s)	585
BmuI	ACTGGG	1 cut(s)	147
Bpu14I	TTCGAA	1 cut(s)	711
BpuEI	CTTGAG	1 cut(s)	52
BsaJI	CCNNGG	2 cut(s)	330, 389
Bsc4I	CCNNNNNNNGG	5 cut(s)	69, 331, 364, 443, 674
Bse1I	ACTGG	4 cut(s)	142, 265, 592, 628
BseBI	CCWGG	2 cut(s)	70, 326
BseDI	CCNNGG	2 cut(s)	330, 389
BseGI	GGATG	3 cut(s)	321, 340, 694
BseLI	CCNNNNNNNGG	5 cut(s)	69, 331, 364, 443, 674
BseNI	ACTGG	4 cut(s)	142, 265, 592, 628
BseRI	GAGGAG	2 cut(s)	320, 420
BseSI	GKGCMC	1 cut(s)	569
BseXI	GCAGC	2 cut(s)	4, 513
Bsh1236I	CGCG	1 cut(s)	360
BshFI	GGCC	5 cut(s)	142, 329, 354, 388, 722
BsiHKAI	GWGCWC	1 cut(s)	634
BsiHKCI	CYCGRG	1 cut(s)	436
BslI	CCNNNNNNNGG	5 cut(s)	69, 331, 364, 443, 674
BsnI	GGCC	5 cut(s)	142, 329, 354, 388, 722
BsoBI	CYCGRG	1 cut(s)	436
Bsp119I	TTCGAA	1 cut(s)	711
Bsp1286I	GDGCHC	2 cut(s)	569, 634
Bsp143I	GATC	3 cut(s)	75, 80, 266
BspACI	CCGC	4 cut(s)	63, 355, 358, 486
BspANI	GGCC	5 cut(s)	142, 329, 354, 388, 722
BspFNI	CGCG	1 cut(s)	360
BspLI	GGNNCC	1 cut(s)	93
BspMAI	CTGCAG	1 cut(s)	706
BspOI	GCTAGC	1 cut(s)	585
BspT104I	TTCGAA	1 cut(s)	711
BsrI	ACTGG	4 cut(s)	142, 265, 592, 628
BssECI	CCNNGG	2 cut(s)	330, 389
BssMI	GATC	3 cut(s)	75, 80, 266
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	2 cut(s)	70, 326
Bst4CI	ACNGT	4 cut(s)	254, 509, 536, 560
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstBI	TTCGAA	1 cut(s)	711
BstC8I	GCNNGC	1 cut(s)	583
BstDEI	CTNAG	1 cut(s)	53
BstEII	GGTNACC	1 cut(s)	431
BstF5I	GGATG	3 cut(s)	321, 340, 694
BstFNI	CGCG	1 cut(s)	360
BstKTI	GATC	3 cut(s)	78, 83, 269
BstMBI	GATC	3 cut(s)	75, 80, 266
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 317, 326
BstNI	CCWGG	2 cut(s)	70, 326
BstNSI	RCATGY	1 cut(s)	133
BstPI	GGTNACC	1 cut(s)	431
BstSCI	CCNGG	2 cut(s)	68, 324
BstSFI	CTRYAG	1 cut(s)	702
BstSLI	GKGCMC	1 cut(s)	569
BstUI	CGCG	1 cut(s)	360
BstV1I	GCAGC	2 cut(s)	4, 513
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuI	GTATCC	1 cut(s)	524
BsuRI	GGCC	5 cut(s)	142, 329, 354, 388, 722
BtgZI	GCGATG	1 cut(s)	35
BtsCI	GGATG	3 cut(s)	321, 340, 694
BtsI	GCAGTG	1 cut(s)	699
BtsIMutI	CAGTG	5 cut(s)	258, 565, 585, 621, 699
Cac8I	GCNNGC	1 cut(s)	583
Cfr13I	GGNCC	2 cut(s)	140, 720
Csp6I	GTAC	1 cut(s)	603
CviAII	CATG	2 cut(s)	130, 350
CviQI	GTAC	1 cut(s)	603
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	3 cut(s)	77, 82, 268
DpnII	GATC	3 cut(s)	75, 80, 266
EaeI	YGGCCR	1 cut(s)	352
Ecl136II	GAGCTC	1 cut(s)	632
Eco130I	CCWWGG	1 cut(s)	330
Eco147I	AGGCCT	2 cut(s)	329, 388
Eco24I	GRGCYC	1 cut(s)	634
Eco53kI	GAGCTC	1 cut(s)	632
Eco88I	CYCGRG	1 cut(s)	436
Eco91I	GGTNACC	1 cut(s)	431
EcoICRI	GAGCTC	1 cut(s)	632
EcoO109I	RGGNCCY	1 cut(s)	720
EcoO65I	GGTNACC	1 cut(s)	431
EcoRII	CCWGG	2 cut(s)	68, 324
EcoT14I	CCWWGG	1 cut(s)	330
EcoT22I	ATGCAT	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	634
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	2 cut(s)	133, 353
FatI	CATG	2 cut(s)	129, 349
Fnu4HI	GCNGC	4 cut(s)	18, 355, 358, 502
FokI	GGATG	3 cut(s)	308, 347, 701
FriOI	GRGCYC	1 cut(s)	634
Fsp4HI	GCNGC	4 cut(s)	18, 355, 358, 502
FspBI	CTAG	2 cut(s)	300, 582
GluI	GCNGC	4 cut(s)	18, 355, 358, 502
HaeIII	GGCC	5 cut(s)	142, 329, 354, 388, 722
Hin1II	CATG	2 cut(s)	133, 353
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HinfI	GANTC	2 cut(s)	240, 282
HphI	GGTGA	3 cut(s)	233, 379, 434
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	4 cut(s)	80, 85, 180, 393
Hpy188III	TCNNGA	3 cut(s)	31, 270, 341
Hpy8I	GTNNAC	1 cut(s)	135
Hpy99I	CGWCG	1 cut(s)	109
HpyAV	CCTTC	2 cut(s)	105, 668
HpyCH4III	ACNGT	4 cut(s)	254, 509, 536, 560
HpyCH4V	TGCA	2 cut(s)	129, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 317, 326
HpyF3I	CTNAG	1 cut(s)	53
Hsp92II	CATG	2 cut(s)	133, 353
Kzo9I	GATC	3 cut(s)	75, 80, 266
LmnI	GCTCC	3 cut(s)	97, 343, 629
Lsp1109I	GCAGC	2 cut(s)	4, 513
LweI	GCATC	2 cut(s)	116, 320
MaeI	CTAG	2 cut(s)	300, 582
MaeIII	GTNAC	3 cut(s)	254, 286, 431
MalI	GATC	3 cut(s)	77, 82, 268
MboI	GATC	3 cut(s)	75, 80, 266
MboII	GAAGA	1 cut(s)	215
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	2 cut(s)	569, 634
MluCI	AATT	5 cut(s)	38, 86, 206, 370, 635
Mph1103I	ATGCAT	1 cut(s)	131
MspR9I	CCNGG	2 cut(s)	70, 326
MvaI	CCWGG	2 cut(s)	70, 326
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	3 cut(s)	23, 317, 326
NdeII	GATC	3 cut(s)	75, 80, 266
NheI	GCTAGC	1 cut(s)	581
NlaIII	CATG	2 cut(s)	133, 353
NlaIV	GGNNCC	1 cut(s)	93
NmuCI	GTSAC	1 cut(s)	254
NsiI	ATGCAT	1 cut(s)	131
NspI	RCATGY	1 cut(s)	133
NspV	TTCGAA	1 cut(s)	711
PceI	AGGCCT	2 cut(s)	329, 388
PfeI	GAWTC	2 cut(s)	240, 282
PflMI	CCANNNNNTGG	1 cut(s)	331
PkrI	GCNGC	4 cut(s)	19, 356, 359, 503
Psp124BI	GAGCTC	1 cut(s)	634
Psp6I	CCWGG	2 cut(s)	68, 324
PspEI	GGTNACC	1 cut(s)	431
PspGI	CCWGG	2 cut(s)	68, 324
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	2 cut(s)	140, 720
PstI	CTGCAG	1 cut(s)	706
PsuI	RGATCY	1 cut(s)	80
RsaI	GTAC	1 cut(s)	604
RsaNI	GTAC	1 cut(s)	603
SacI	GAGCTC	1 cut(s)	634
SatI	GCNGC	4 cut(s)	18, 355, 358, 502
Sau3AI	GATC	3 cut(s)	75, 80, 266
Sau96I	GGNCC	2 cut(s)	140, 720
ScrFI	CCNGG	2 cut(s)	70, 326
SduI	GDGCHC	2 cut(s)	569, 634
SetI	ASST	9 cut(s)	169, 348, 412, 445, 484, 499, 506, 617, 634
SfaNI	GCATC	2 cut(s)	116, 320
SfcI	CTRYAG	1 cut(s)	702
SfuI	TTCGAA	1 cut(s)	711
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
Sse9I	AATT	5 cut(s)	38, 86, 206, 370, 635
SseBI	AGGCCT	2 cut(s)	329, 388
SsiI	CCGC	4 cut(s)	63, 355, 358, 486
SspMI	CTAG	2 cut(s)	300, 582
SstI	GAGCTC	1 cut(s)	634
StuI	AGGCCT	2 cut(s)	329, 388
StyD4I	CCNGG	2 cut(s)	68, 324
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	4 cut(s)	254, 509, 536, 560
TaqI	TCGA	4 cut(s)	107, 269, 660, 711
TasI	AATT	5 cut(s)	38, 86, 206, 370, 635
TauI	GCSGC	2 cut(s)	357, 360
TfiI	GAWTC	2 cut(s)	240, 282
TscAI	CASTG	5 cut(s)	265, 565, 592, 628, 706
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	2 cut(s)	17, 501
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	338
TspRI	CASTG	5 cut(s)	265, 565, 592, 628, 706
Van91I	CCANNNNNTGG	1 cut(s)	331
XapI	RAATTY	2 cut(s)	38, 206
XceI	RCATGY	1 cut(s)	133
XcmI	CCANNNNNNNNNTGG	2 cut(s)	328, 332
XspI	CTAG	2 cut(s)	300, 582
Zsp2I	ATGCAT	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.